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CmoCh03G011180 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh03G011180
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionCOPII coat assembly protein SEC16, putative
Genome locationCmo_Chr03:8978180..8978659
RNA-Seq ExpressionCmoCh03G011180
SyntenyCmoCh03G011180
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008462609.1 PREDICTED: uncharacterized protein LOC103500927 [Cucumis melo]2.0e-5377.64Show/hide
Query:  MAKSAAQKTYPPPSPSPSPANLCRRSLIPSSAMPPQNGTLSPAPPPSPIDLRLLS-KSSSQSYTSLKDILPS-SAVAVNSPTAASPANSGYEILIRNRLV
        MAKSAAQ TYPPPSPS     L R + +PSS MPP N  +SP PPPSPI+L LLS KSSSQSYTSLKDILPS SA AVNSPTAASPANS YEI IRNRLV
Subjt:  MAKSAAQKTYPPPSPSPSPANLCRRSLIPSSAMPPQNGTLSPAPPPSPIDLRLLS-KSSSQSYTSLKDILPS-SAVAVNSPTAASPANSGYEILIRNRLV

Query:  KQAAWAYLQPMSASSYSAGPNLFHGLWLRFSTGNPISSCLGFIRGCIIPSIIRVFRSCICL
        KQAAWAYLQPMSASSYSAGPN FH   LRFSTGNPI SC GFI   IIP+IIR FR CICL
Subjt:  KQAAWAYLQPMSASSYSAGPNLFHGLWLRFSTGNPISSCLGFIRGCIIPSIIRVFRSCICL

XP_022926106.1 uncharacterized protein LOC111433319 [Cucurbita moschata]2.5e-80100Show/hide
Query:  MAKSAAQKTYPPPSPSPSPANLCRRSLIPSSAMPPQNGTLSPAPPPSPIDLRLLSKSSSQSYTSLKDILPSSAVAVNSPTAASPANSGYEILIRNRLVKQ
        MAKSAAQKTYPPPSPSPSPANLCRRSLIPSSAMPPQNGTLSPAPPPSPIDLRLLSKSSSQSYTSLKDILPSSAVAVNSPTAASPANSGYEILIRNRLVKQ
Subjt:  MAKSAAQKTYPPPSPSPSPANLCRRSLIPSSAMPPQNGTLSPAPPPSPIDLRLLSKSSSQSYTSLKDILPSSAVAVNSPTAASPANSGYEILIRNRLVKQ

Query:  AAWAYLQPMSASSYSAGPNLFHGLWLRFSTGNPISSCLGFIRGCIIPSIIRVFRSCICL
        AAWAYLQPMSASSYSAGPNLFHGLWLRFSTGNPISSCLGFIRGCIIPSIIRVFRSCICL
Subjt:  AAWAYLQPMSASSYSAGPNLFHGLWLRFSTGNPISSCLGFIRGCIIPSIIRVFRSCICL

XP_022979075.1 uncharacterized protein LOC111478820 [Cucurbita maxima]1.1e-7898.11Show/hide
Query:  MAKSAAQKTYPPPSPSPSPANLCRRSLIPSSAMPPQNGTLSPAPPPSPIDLRLLSKSSSQSYTSLKDILPSSAVAVNSPTAASPANSGYEILIRNRLVKQ
        MAKSAAQKTYPPPSPSPSPANLCRRSLIPSSAMPPQNGTLSPAPPPSPIDLRLLSKSSSQSYTSLKDILPSSAVAVNSPTAASPANSGYEILIRNRLVKQ
Subjt:  MAKSAAQKTYPPPSPSPSPANLCRRSLIPSSAMPPQNGTLSPAPPPSPIDLRLLSKSSSQSYTSLKDILPSSAVAVNSPTAASPANSGYEILIRNRLVKQ

Query:  AAWAYLQPMSASSYSAGPNLFHGLWLRFSTGNPISSCLGFIRGCIIPSIIRVFRSCICL
        AAWAYLQPMSASSYSAGPNLFH  WLRFSTGNPISSCLGFIRGCIIPSIIRVFRSCIC+
Subjt:  AAWAYLQPMSASSYSAGPNLFHGLWLRFSTGNPISSCLGFIRGCIIPSIIRVFRSCICL

XP_023544532.1 uncharacterized protein LOC111804081 [Cucurbita pepo subsp. pepo]2.4e-7898.14Show/hide
Query:  MAKSAAQKTYPP--PSPSPSPANLCRRSLIPSSAMPPQNGTLSPAPPPSPIDLRLLSKSSSQSYTSLKDILPSSAVAVNSPTAASPANSGYEILIRNRLV
        MAKSAAQKTYPP  PSPSPSPANLCRRSLIPSSAMPPQNGTLSPAPPPSPIDLRLLSKSSSQSYTSLKDILPSSAVAVNSPTAASPANSGYEILIRNRLV
Subjt:  MAKSAAQKTYPP--PSPSPSPANLCRRSLIPSSAMPPQNGTLSPAPPPSPIDLRLLSKSSSQSYTSLKDILPSSAVAVNSPTAASPANSGYEILIRNRLV

Query:  KQAAWAYLQPMSASSYSAGPNLFHGLWLRFSTGNPISSCLGFIRGCIIPSIIRVFRSCICL
        KQAAWAYLQPMSASSYSAGPNLFHG WLRFSTGNPISSCLGFIRGCIIPSIIRVFRSCICL
Subjt:  KQAAWAYLQPMSASSYSAGPNLFHGLWLRFSTGNPISSCLGFIRGCIIPSIIRVFRSCICL

XP_038883302.1 uncharacterized protein LOC120074291 [Benincasa hispida]2.4e-5981.6Show/hide
Query:  MAKSAAQKTYPPPSPSPSPANLCRRSLIPSSAMPPQNGT---LSPAPPPSPIDLRLLS-KSSSQSYTSLKDILPSSAVAVNSPTAASPANSGYEILIRNR
        MAKSAAQ TYPPPSPS S  NL  R+ IPSS MPP NGT   +SP PPPSPI+LRLLS KSSSQSYTSLKDILPS++ AVNSPTAASPANSGYEI IRNR
Subjt:  MAKSAAQKTYPPPSPSPSPANLCRRSLIPSSAMPPQNGT---LSPAPPPSPIDLRLLS-KSSSQSYTSLKDILPSSAVAVNSPTAASPANSGYEILIRNR

Query:  LVKQAAWAYLQPMSASSYSAGPNLFHGLWLRFSTGNPISSCLGFIRGCIIPSIIRVFRSCICL
        LVKQAAWAYLQPMSASSYSAGPN FH  WLRFST NPI  CLGFIRG IIP+IIRVFR CICL
Subjt:  LVKQAAWAYLQPMSASSYSAGPNLFHGLWLRFSTGNPISSCLGFIRGCIIPSIIRVFRSCICL

TrEMBL top hitse value%identityAlignment
A0A1S3CHC6 uncharacterized protein LOC1035009279.7e-5477.64Show/hide
Query:  MAKSAAQKTYPPPSPSPSPANLCRRSLIPSSAMPPQNGTLSPAPPPSPIDLRLLS-KSSSQSYTSLKDILPS-SAVAVNSPTAASPANSGYEILIRNRLV
        MAKSAAQ TYPPPSPS     L R + +PSS MPP N  +SP PPPSPI+L LLS KSSSQSYTSLKDILPS SA AVNSPTAASPANS YEI IRNRLV
Subjt:  MAKSAAQKTYPPPSPSPSPANLCRRSLIPSSAMPPQNGTLSPAPPPSPIDLRLLS-KSSSQSYTSLKDILPS-SAVAVNSPTAASPANSGYEILIRNRLV

Query:  KQAAWAYLQPMSASSYSAGPNLFHGLWLRFSTGNPISSCLGFIRGCIIPSIIRVFRSCICL
        KQAAWAYLQPMSASSYSAGPN FH   LRFSTGNPI SC GFI   IIP+IIR FR CICL
Subjt:  KQAAWAYLQPMSASSYSAGPNLFHGLWLRFSTGNPISSCLGFIRGCIIPSIIRVFRSCICL

A0A5A7SL81 Putative COPII coat assembly protein SEC169.7e-5477.64Show/hide
Query:  MAKSAAQKTYPPPSPSPSPANLCRRSLIPSSAMPPQNGTLSPAPPPSPIDLRLLS-KSSSQSYTSLKDILPS-SAVAVNSPTAASPANSGYEILIRNRLV
        MAKSAAQ TYPPPSPS     L R + +PSS MPP N  +SP PPPSPI+L LLS KSSSQSYTSLKDILPS SA AVNSPTAASPANS YEI IRNRLV
Subjt:  MAKSAAQKTYPPPSPSPSPANLCRRSLIPSSAMPPQNGTLSPAPPPSPIDLRLLS-KSSSQSYTSLKDILPS-SAVAVNSPTAASPANSGYEILIRNRLV

Query:  KQAAWAYLQPMSASSYSAGPNLFHGLWLRFSTGNPISSCLGFIRGCIIPSIIRVFRSCICL
        KQAAWAYLQPMSASSYSAGPN FH   LRFSTGNPI SC GFI   IIP+IIR FR CICL
Subjt:  KQAAWAYLQPMSASSYSAGPNLFHGLWLRFSTGNPISSCLGFIRGCIIPSIIRVFRSCICL

A0A5D3C6C7 Putative COPII coat assembly protein SEC169.7e-5477.64Show/hide
Query:  MAKSAAQKTYPPPSPSPSPANLCRRSLIPSSAMPPQNGTLSPAPPPSPIDLRLLS-KSSSQSYTSLKDILPS-SAVAVNSPTAASPANSGYEILIRNRLV
        MAKSAAQ TYPPPSPS     L R + +PSS MPP N  +SP PPPSPI+L LLS KSSSQSYTSLKDILPS SA AVNSPTAASPANS YEI IRNRLV
Subjt:  MAKSAAQKTYPPPSPSPSPANLCRRSLIPSSAMPPQNGTLSPAPPPSPIDLRLLS-KSSSQSYTSLKDILPS-SAVAVNSPTAASPANSGYEILIRNRLV

Query:  KQAAWAYLQPMSASSYSAGPNLFHGLWLRFSTGNPISSCLGFIRGCIIPSIIRVFRSCICL
        KQAAWAYLQPMSASSYSAGPN FH   LRFSTGNPI SC GFI   IIP+IIR FR CICL
Subjt:  KQAAWAYLQPMSASSYSAGPNLFHGLWLRFSTGNPISSCLGFIRGCIIPSIIRVFRSCICL

A0A6J1EDY2 uncharacterized protein LOC1114333191.2e-80100Show/hide
Query:  MAKSAAQKTYPPPSPSPSPANLCRRSLIPSSAMPPQNGTLSPAPPPSPIDLRLLSKSSSQSYTSLKDILPSSAVAVNSPTAASPANSGYEILIRNRLVKQ
        MAKSAAQKTYPPPSPSPSPANLCRRSLIPSSAMPPQNGTLSPAPPPSPIDLRLLSKSSSQSYTSLKDILPSSAVAVNSPTAASPANSGYEILIRNRLVKQ
Subjt:  MAKSAAQKTYPPPSPSPSPANLCRRSLIPSSAMPPQNGTLSPAPPPSPIDLRLLSKSSSQSYTSLKDILPSSAVAVNSPTAASPANSGYEILIRNRLVKQ

Query:  AAWAYLQPMSASSYSAGPNLFHGLWLRFSTGNPISSCLGFIRGCIIPSIIRVFRSCICL
        AAWAYLQPMSASSYSAGPNLFHGLWLRFSTGNPISSCLGFIRGCIIPSIIRVFRSCICL
Subjt:  AAWAYLQPMSASSYSAGPNLFHGLWLRFSTGNPISSCLGFIRGCIIPSIIRVFRSCICL

A0A6J1IS66 uncharacterized protein LOC1114788205.1e-7998.11Show/hide
Query:  MAKSAAQKTYPPPSPSPSPANLCRRSLIPSSAMPPQNGTLSPAPPPSPIDLRLLSKSSSQSYTSLKDILPSSAVAVNSPTAASPANSGYEILIRNRLVKQ
        MAKSAAQKTYPPPSPSPSPANLCRRSLIPSSAMPPQNGTLSPAPPPSPIDLRLLSKSSSQSYTSLKDILPSSAVAVNSPTAASPANSGYEILIRNRLVKQ
Subjt:  MAKSAAQKTYPPPSPSPSPANLCRRSLIPSSAMPPQNGTLSPAPPPSPIDLRLLSKSSSQSYTSLKDILPSSAVAVNSPTAASPANSGYEILIRNRLVKQ

Query:  AAWAYLQPMSASSYSAGPNLFHGLWLRFSTGNPISSCLGFIRGCIIPSIIRVFRSCICL
        AAWAYLQPMSASSYSAGPNLFH  WLRFSTGNPISSCLGFIRGCIIPSIIRVFRSCIC+
Subjt:  AAWAYLQPMSASSYSAGPNLFHGLWLRFSTGNPISSCLGFIRGCIIPSIIRVFRSCICL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G52520.1 unknown protein4.2e-0939.29Show/hide
Query:  SLIPSSAMPPQNGTLSPAPPPSPIDLRLLSKSSSQS-----YTSLKDILPSSAVAVNSPT---AASPANSGYEILIRNRLVKQAAWAYLQPMSASSYSAG
        +L+  S +  +NG +S       +DL L+S + S       YTSLKDILPSS+  V+SP    A + A SG  I IRNRLVKQAA +YLQP S  + S+ 
Subjt:  SLIPSSAMPPQNGTLSPAPPPSPIDLRLLSKSSSQS-----YTSLKDILPSSAVAVNSPT---AASPANSGYEILIRNRLVKQAAWAYLQPMSASSYSAG

Query:  PNLFHGLWLRFSTGNPISSCLGFIRGC--IIPSIIRVFRS
        P+     +LR  + + I     F      I PS  ++FR+
Subjt:  PNLFHGLWLRFSTGNPISSCLGFIRGC--IIPSIIRVFRS

AT5G06280.1 unknown protein3.2e-0938.46Show/hide
Query:  PSPSPANLCRRSLIPS---SAMPPQNGTLSPAPPPSPIDLRLLS--KSSSQSYTSLKDILPS------SAVAVNSPTAASPANSGYEILIRNRLVKQAAW
        PS SPA   RR+   S   +  PP+      + PPS  D  L+S   SS  +YTSL+DI+ S      +  ++N   +   + +  +I IRNRLVKQAA 
Subjt:  PSPSPANLCRRSLIPS---SAMPPQNGTLSPAPPPSPIDLRLLS--KSSSQSYTSLKDILPS------SAVAVNSPTAASPANSGYEILIRNRLVKQAAW

Query:  AYLQP--MSASSYSAGPNLFHGLWLRFSTG
        +YLQP  +++S  SAG   F  +WL  S G
Subjt:  AYLQP--MSASSYSAGPNLFHGLWLRFSTG

AT5G06280.3 unknown protein3.2e-0938.46Show/hide
Query:  PSPSPANLCRRSLIPS---SAMPPQNGTLSPAPPPSPIDLRLLS--KSSSQSYTSLKDILPS------SAVAVNSPTAASPANSGYEILIRNRLVKQAAW
        PS SPA   RR+   S   +  PP+      + PPS  D  L+S   SS  +YTSL+DI+ S      +  ++N   +   + +  +I IRNRLVKQAA 
Subjt:  PSPSPANLCRRSLIPS---SAMPPQNGTLSPAPPPSPIDLRLLS--KSSSQSYTSLKDILPS------SAVAVNSPTAASPANSGYEILIRNRLVKQAAW

Query:  AYLQP--MSASSYSAGPNLFHGLWLRFSTG
        +YLQP  +++S  SAG   F  +WL  S G
Subjt:  AYLQP--MSASSYSAGPNLFHGLWLRFSTG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAAATCCGCCGCACAGAAAACCTACCCACCGCCGTCGCCGTCGCCATCACCTGCTAATCTCTGCCGCAGAAGCTTGATTCCCTCCTCCGCCATGCCTCCG
CAAAACGGCACCCTTTCCCCTGCTCCACCGCCGTCCCCGATTGACTTGAGGCTCCTCTCCAAGTCATCTTCTCAATCCTACACCTCCCTCAAGGACATCCTTCCC
TCCTCCGCCGTCGCCGTCAACTCTCCCACCGCCGCTTCCCCCGCTAACTCCGGCTACGAAATCTTGATCCGCAACCGCCTCGTTAAGCAGGCCGCTTGGGCTTAT
CTCCAACCTATGTCCGCTTCGTCCTATTCCGCTGGCCCCAATCTTTTCCACGGTTTATGGCTCCGATTCTCTACCGGAAATCCGATCTCCAGTTGTCTCGGATTC
ATCAGAGGCTGTATCATTCCGTCAATAATCCGAGTCTTCCGGTCCTGCATTTGCCTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCAAATCCGCCGCACAGAAAACCTACCCACCGCCGTCGCCGTCGCCATCACCTGCTAATCTCTGCCGCAGAAGCTTGATTCCCTCCTCCGCCATGCCTCCG
CAAAACGGCACCCTTTCCCCTGCTCCACCGCCGTCCCCGATTGACTTGAGGCTCCTCTCCAAGTCATCTTCTCAATCCTACACCTCCCTCAAGGACATCCTTCCC
TCCTCCGCCGTCGCCGTCAACTCTCCCACCGCCGCTTCCCCCGCTAACTCCGGCTACGAAATCTTGATCCGCAACCGCCTCGTTAAGCAGGCCGCTTGGGCTTAT
CTCCAACCTATGTCCGCTTCGTCCTATTCCGCTGGCCCCAATCTTTTCCACGGTTTATGGCTCCGATTCTCTACCGGAAATCCGATCTCCAGTTGTCTCGGATTC
ATCAGAGGCTGTATCATTCCGTCAATAATCCGAGTCTTCCGGTCCTGCATTTGCCTATGA
Protein sequenceShow/hide protein sequence
MAKSAAQKTYPPPSPSPSPANLCRRSLIPSSAMPPQNGTLSPAPPPSPIDLRLLSKSSSQSYTSLKDILPSSAVAVNSPTAASPANSGYEILIRNRLVKQAAWAY
LQPMSASSYSAGPNLFHGLWLRFSTGNPISSCLGFIRGCIIPSIIRVFRSCICL