; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh03G012980 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh03G012980
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionF1K23.23, putative isoform 1
Genome locationCmo_Chr03:9792163..9792869
RNA-Seq ExpressionCmoCh03G012980
SyntenyCmoCh03G012980
Gene Ontology termsGO:0010027 - thylakoid membrane organization (biological process)
GO:0090391 - granum assembly (biological process)
GO:1903866 - palisade mesophyll development (biological process)
GO:0009507 - chloroplast (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581337.1 hypothetical protein SDJN03_21339, partial [Cucurbita argyrosperma subsp. sororia]2.5e-25100Show/hide
Query:  VVLSTEGKIVGFQPTSRVAVNYWAANPLAKQLYGGRNLSPGLFESGLRIRRPNEVIVIELLM
        VVLSTEGKIVGFQPTSRVAVNYWAANPLAKQLYGGRNLSPGLFESGLRIRRPNEVIVIELLM
Subjt:  VVLSTEGKIVGFQPTSRVAVNYWAANPLAKQLYGGRNLSPGLFESGLRIRRPNEVIVIELLM
XP_022925753.1 uncharacterized protein LOC111433068 [Cucurbita moschata]2.5e-25100Show/hide
Query:  VVLSTEGKIVGFQPTSRVAVNYWAANPLAKQLYGGRNLSPGLFESGLRIRRPNEVIVIELLM
        VVLSTEGKIVGFQPTSRVAVNYWAANPLAKQLYGGRNLSPGLFESGLRIRRPNEVIVIELLM
Subjt:  VVLSTEGKIVGFQPTSRVAVNYWAANPLAKQLYGGRNLSPGLFESGLRIRRPNEVIVIELLM
XP_022978666.1 uncharacterized protein LOC111478564 isoform X1 [Cucurbita maxima]5.6e-2598.39Show/hide
Query:  VVLSTEGKIVGFQPTSRVAVNYWAANPLAKQLYGGRNLSPGLFESGLRIRRPNEVIVIELLM
        VVLSTEGKIVGFQPTSRVAVNYWAANPLAKQLYGGRNLSPGLFESGLRIRRPNEVIVIELL+
Subjt:  VVLSTEGKIVGFQPTSRVAVNYWAANPLAKQLYGGRNLSPGLFESGLRIRRPNEVIVIELLM
XP_022978667.1 uncharacterized protein LOC111478564 isoform X2 [Cucurbita maxima]5.6e-2598.39Show/hide
Query:  VVLSTEGKIVGFQPTSRVAVNYWAANPLAKQLYGGRNLSPGLFESGLRIRRPNEVIVIELLM
        VVLSTEGKIVGFQPTSRVAVNYWAANPLAKQLYGGRNLSPGLFESGLRIRRPNEVIVIELL+
Subjt:  VVLSTEGKIVGFQPTSRVAVNYWAANPLAKQLYGGRNLSPGLFESGLRIRRPNEVIVIELLM
XP_023543337.1 uncharacterized protein LOC111803246 [Cucurbita pepo subsp. pepo]2.5e-25100Show/hide
Query:  VVLSTEGKIVGFQPTSRVAVNYWAANPLAKQLYGGRNLSPGLFESGLRIRRPNEVIVIELLM
        VVLSTEGKIVGFQPTSRVAVNYWAANPLAKQLYGGRNLSPGLFESGLRIRRPNEVIVIELLM
Subjt:  VVLSTEGKIVGFQPTSRVAVNYWAANPLAKQLYGGRNLSPGLFESGLRIRRPNEVIVIELLM
TrEMBL top hitse value%identityAlignment
A0A6J1CM73 uncharacterized protein LOC111012401 isoform X13.3e-2391.94Show/hide
Query:  VVLSTEGKIVGFQPTSRVAVNYWAANPLAKQLYGGRNLSPGLFESGLRIRRPNEVIVIELLM
        VVLST+GKIVGFQPTSRVAVNYWAANPLAKQLYGGRNLSPG  ESGL+I RPNEVIVIELLM
Subjt:  VVLSTEGKIVGFQPTSRVAVNYWAANPLAKQLYGGRNLSPGLFESGLRIRRPNEVIVIELLM
A0A6J1CMT2 uncharacterized protein LOC111012401 isoform X23.3e-2391.94Show/hide
Query:  VVLSTEGKIVGFQPTSRVAVNYWAANPLAKQLYGGRNLSPGLFESGLRIRRPNEVIVIELLM
        VVLST+GKIVGFQPTSRVAVNYWAANPLAKQLYGGRNLSPG  ESGL+I RPNEVIVIELLM
Subjt:  VVLSTEGKIVGFQPTSRVAVNYWAANPLAKQLYGGRNLSPGLFESGLRIRRPNEVIVIELLM
A0A6J1EG51 uncharacterized protein LOC1114330681.2e-25100Show/hide
Query:  VVLSTEGKIVGFQPTSRVAVNYWAANPLAKQLYGGRNLSPGLFESGLRIRRPNEVIVIELLM
        VVLSTEGKIVGFQPTSRVAVNYWAANPLAKQLYGGRNLSPGLFESGLRIRRPNEVIVIELLM
Subjt:  VVLSTEGKIVGFQPTSRVAVNYWAANPLAKQLYGGRNLSPGLFESGLRIRRPNEVIVIELLM
A0A6J1ILQ4 uncharacterized protein LOC111478564 isoform X22.7e-2598.39Show/hide
Query:  VVLSTEGKIVGFQPTSRVAVNYWAANPLAKQLYGGRNLSPGLFESGLRIRRPNEVIVIELLM
        VVLSTEGKIVGFQPTSRVAVNYWAANPLAKQLYGGRNLSPGLFESGLRIRRPNEVIVIELL+
Subjt:  VVLSTEGKIVGFQPTSRVAVNYWAANPLAKQLYGGRNLSPGLFESGLRIRRPNEVIVIELLM
A0A6J1INI1 uncharacterized protein LOC111478564 isoform X12.7e-2598.39Show/hide
Query:  VVLSTEGKIVGFQPTSRVAVNYWAANPLAKQLYGGRNLSPGLFESGLRIRRPNEVIVIELLM
        VVLSTEGKIVGFQPTSRVAVNYWAANPLAKQLYGGRNLSPGLFESGLRIRRPNEVIVIELL+
Subjt:  VVLSTEGKIVGFQPTSRVAVNYWAANPLAKQLYGGRNLSPGLFESGLRIRRPNEVIVIELLM
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G28530.1 unknown protein9.0e-2170.97Show/hide
Query:  VVLSTEGKIVGFQPTSRVAVNYWAANPLAKQLYGGRNLSPGLFESGLRIRRPNEVIVIELLM
        VVLS+EGKI+GFQPTSRVAVN+WAANPLA++LYGG+ L PGL E GL+   P +V+V+ELLM
Subjt:  VVLSTEGKIVGFQPTSRVAVNYWAANPLAKQLYGGRNLSPGLFESGLRIRRPNEVIVIELLM
AT1G28530.2 unknown protein9.0e-2170.97Show/hide
Query:  VVLSTEGKIVGFQPTSRVAVNYWAANPLAKQLYGGRNLSPGLFESGLRIRRPNEVIVIELLM
        VVLS+EGKI+GFQPTSRVAVN+WAANPLA++LYGG+ L PGL E GL+   P +V+V+ELLM
Subjt:  VVLSTEGKIVGFQPTSRVAVNYWAANPLAKQLYGGRNLSPGLFESGLRIRRPNEVIVIELLM

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTCAAGCTTTGATAAGGCTTTCAGCACCTTTGCCTGCAATATTGGTGGTCTTGTCGACTGAAGGAAAGATTGTAGGATTCCAACCAACCAGTCGGGTTGCTGTTAA
CTATTGGGCTGCTAATCCTTTAGCAAAGCAATTATATGGTGGGAGGAACTTGTCCCCGGGCCTTTTTGAATCTGGGTTAAGGATCAGACGCCCGAATGAGGTGATTGTGA
TAGAGTTGCTTATGCTTCCAGCCCCTCCTAAAGAAGTTGCCATCCCATGCATGCATTTCGCTCAGATCTCCTCAATGTCGTCAATATAG
mRNA sequenceShow/hide mRNA sequence
ATGTTTCAAGCTTTGATAAGGCTTTCAGCACCTTTGCCTGCAATATTGGTGGTCTTGTCGACTGAAGGAAAGATTGTAGGATTCCAACCAACCAGTCGGGTTGCTGTTAA
CTATTGGGCTGCTAATCCTTTAGCAAAGCAATTATATGGTGGGAGGAACTTGTCCCCGGGCCTTTTTGAATCTGGGTTAAGGATCAGACGCCCGAATGAGGTGATTGTGA
TAGAGTTGCTTATGCTTCCAGCCCCTCCTAAAGAAGTTGCCATCCCATGCATGCATTTCGCTCAGATCTCCTCAATGTCGTCAATATAG
Protein sequenceShow/hide protein sequence
MFQALIRLSAPLPAILVVLSTEGKIVGFQPTSRVAVNYWAANPLAKQLYGGRNLSPGLFESGLRIRRPNEVIVIELLMLPAPPKEVAIPCMHFAQISSMSSI