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CmoCh03G013330 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh03G013330
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionTranscription factor bHLH35-like protein
Genome locationCmo_Chr03:9929314..9930424
RNA-Seq ExpressionCmoCh03G013330
SyntenyCmoCh03G013330
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581368.1 hypothetical protein SDJN03_21370, partial [Cucurbita argyrosperma subsp. sororia]5.7e-7099.32Show/hide
Query:  GKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLSMKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKGGDRLVTVLEAFDKMGLNVLQAKVSCSECFSM
        GKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLSMKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKGGDRLVTVLEAFDKMGLNVLQAKVSCSECFSM
Subjt:  GKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLSMKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKGGDRLVTVLEAFDKMGLNVLQAKVSCSECFSM

Query:  EAIAVAEDEQSLNISDITEAINAAIDGKSLAANQQQKETPKKDDEI
        EAIAVAEDEQSLNISDITEAINAAIDGKSLAANQQQKETP+KDDEI
Subjt:  EAIAVAEDEQSLNISDITEAINAAIDGKSLAANQQQKETPKKDDEI

KAG7034655.1 hypothetical protein SDJN02_04385, partial [Cucurbita argyrosperma subsp. argyrosperma]6.3e-8599.42Show/hide
Query:  MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLSMKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKGGDRL
        MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLSMKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKGGDRL
Subjt:  MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLSMKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKGGDRL

Query:  VTVLEAFDKMGLNVLQAKVSCSECFSMEAIAVAEDEQSLNISDITEAINAAIDGKSLAANQQQKETPKKDDEI
        VTVLEAFDKMGLNVLQAKVSCSECFSMEAIAVAEDEQSLNISDITEAINAAIDGKSLAANQQQKETP+KDDEI
Subjt:  VTVLEAFDKMGLNVLQAKVSCSECFSMEAIAVAEDEQSLNISDITEAINAAIDGKSLAANQQQKETPKKDDEI

XP_022925942.1 uncharacterized protein LOC111433204 [Cucurbita moschata]2.2e-85100Show/hide
Query:  MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLSMKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKGGDRL
        MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLSMKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKGGDRL
Subjt:  MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLSMKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKGGDRL

Query:  VTVLEAFDKMGLNVLQAKVSCSECFSMEAIAVAEDEQSLNISDITEAINAAIDGKSLAANQQQKETPKKDDEI
        VTVLEAFDKMGLNVLQAKVSCSECFSMEAIAVAEDEQSLNISDITEAINAAIDGKSLAANQQQKETPKKDDEI
Subjt:  VTVLEAFDKMGLNVLQAKVSCSECFSMEAIAVAEDEQSLNISDITEAINAAIDGKSLAANQQQKETPKKDDEI

XP_022978770.1 uncharacterized protein LOC111478631 [Cucurbita maxima]7.0e-8498.27Show/hide
Query:  MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLSMKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKGGDRL
        MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLSMKREYLNSVKQIHAPKEVKVEKVGEE RVKVRCEKGGDRL
Subjt:  MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLSMKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKGGDRL

Query:  VTVLEAFDKMGLNVLQAKVSCSECFSMEAIAVAEDEQSLNISDITEAINAAIDGKSLAANQQQKETPKKDDEI
        VTVLEAFDKMGLNVLQAKVSCSECFSMEAIAVAEDEQSLNI DITEAINAAIDGKSLAANQQQKETP+KDDEI
Subjt:  VTVLEAFDKMGLNVLQAKVSCSECFSMEAIAVAEDEQSLNISDITEAINAAIDGKSLAANQQQKETPKKDDEI

XP_023544520.1 uncharacterized protein LOC111804071 [Cucurbita pepo subsp. pepo]5.3e-8498.27Show/hide
Query:  MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLSMKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKGGDRL
        MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLSMKREYLNSVKQIHAPKEVKVEKVGEE RVKVRCEKGGDRL
Subjt:  MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLSMKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKGGDRL

Query:  VTVLEAFDKMGLNVLQAKVSCSECFSMEAIAVAEDEQSLNISDITEAINAAIDGKSLAANQQQKETPKKDDEI
        VTVLEAFDKMGLNVLQAKVSCSECFSMEAIAVAEDEQSLNISDITEAINAAI+GKSLAANQQQKETP+KDDEI
Subjt:  VTVLEAFDKMGLNVLQAKVSCSECFSMEAIAVAEDEQSLNISDITEAINAAIDGKSLAANQQQKETPKKDDEI

TrEMBL top hitse value%identityAlignment
A0A1S3B049 uncharacterized protein LOC1034844378.6e-6476.44Show/hide
Query:  MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLSMKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKGGDRL
        MVST QKRFDSR KLRLVRSLPTY+SSG+Q+  FWNAVLF+HKLKLKLEAIEREYSNLL MKREYLNS+KQ H+ KEVKVEK GEE RVKVRCEKGGDRL
Subjt:  MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLSMKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKGGDRL

Query:  VTVLEAFDKMGLNVLQAKVSCSECFSMEAIAVAED-EQSLNISDITEAINAAIDGKSLAANQQQKETPKKDDEI
        V+VLEAF+KMGLNV++A+VSC+ECF MEAIAVAED  Q LN+SDIT+AIN AID K LA NQ   + P  D ++
Subjt:  VTVLEAFDKMGLNVLQAKVSCSECFSMEAIAVAED-EQSLNISDITEAINAAIDGKSLAANQQQKETPKKDDEI

A0A5A7UBN8 Uncharacterized protein6.6e-6476.44Show/hide
Query:  MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLSMKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKGGDRL
        MVST QKRFDSR KLRLVRSLPTY+SSG+Q+  FWNAVLF+HKLKLKLEAIEREYSNLL+MKREYLNS+KQ H+ KEVKVEK GEE RVKVRCEKGGDRL
Subjt:  MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLSMKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKGGDRL

Query:  VTVLEAFDKMGLNVLQAKVSCSECFSMEAIAVAED-EQSLNISDITEAINAAIDGKSLAANQQQKETPKKDDEI
        V+VLEAF+KMGLNV++A+VSC+ECF MEAIAVAED  Q LN+SDIT+AIN AID K LA NQ   + P  D ++
Subjt:  VTVLEAFDKMGLNVLQAKVSCSECFSMEAIAVAED-EQSLNISDITEAINAAIDGKSLAANQQQKETPKKDDEI

A0A6J1ED01 uncharacterized protein LOC1114332041.0e-85100Show/hide
Query:  MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLSMKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKGGDRL
        MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLSMKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKGGDRL
Subjt:  MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLSMKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKGGDRL

Query:  VTVLEAFDKMGLNVLQAKVSCSECFSMEAIAVAEDEQSLNISDITEAINAAIDGKSLAANQQQKETPKKDDEI
        VTVLEAFDKMGLNVLQAKVSCSECFSMEAIAVAEDEQSLNISDITEAINAAIDGKSLAANQQQKETPKKDDEI
Subjt:  VTVLEAFDKMGLNVLQAKVSCSECFSMEAIAVAEDEQSLNISDITEAINAAIDGKSLAANQQQKETPKKDDEI

A0A6J1IR65 uncharacterized protein LOC1114786313.4e-8498.27Show/hide
Query:  MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLSMKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKGGDRL
        MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLSMKREYLNSVKQIHAPKEVKVEKVGEE RVKVRCEKGGDRL
Subjt:  MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLSMKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKGGDRL

Query:  VTVLEAFDKMGLNVLQAKVSCSECFSMEAIAVAEDEQSLNISDITEAINAAIDGKSLAANQQQKETPKKDDEI
        VTVLEAFDKMGLNVLQAKVSCSECFSMEAIAVAEDEQSLNI DITEAINAAIDGKSLAANQQQKETP+KDDEI
Subjt:  VTVLEAFDKMGLNVLQAKVSCSECFSMEAIAVAEDEQSLNISDITEAINAAIDGKSLAANQQQKETPKKDDEI

E5GC31 Uncharacterized protein8.6e-6476.44Show/hide
Query:  MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLSMKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKGGDRL
        MVST QKRFDSR KLRLVRSLPTY+SSG+Q+  FWNAVLF+HKLKLKLEAIEREYSNLL MKREYLNS+KQ H+ KEVKVEK GEE RVKVRCEKGGDRL
Subjt:  MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLSMKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKGGDRL

Query:  VTVLEAFDKMGLNVLQAKVSCSECFSMEAIAVAED-EQSLNISDITEAINAAIDGKSLAANQQQKETPKKDDEI
        V+VLEAF+KMGLNV++A+VSC+ECF MEAIAVAED  Q LN+SDIT+AIN AID K LA NQ   + P  D ++
Subjt:  VTVLEAFDKMGLNVLQAKVSCSECFSMEAIAVAED-EQSLNISDITEAINAAIDGKSLAANQQQKETPKKDDEI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G29270.1 unknown protein6.8e-2138.31Show/hide
Query:  MVSTFQKRFDSRKKLRLVRSLPTYQ-SSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLSMKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKGGDR
        MV++ QK+  S+ K   +++L  ++ S  +QS     A+L++  LKL++EA++REY +L   K+E       +H  +EVKVEK+GE  +VK++  +G + 
Subjt:  MVSTFQKRFDSRKKLRLVRSLPTYQ-SSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLSMKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKGGDR

Query:  LVTVLEAFDKMGLNVLQAKVSCSECFSMEAIAVAEDEQSL-NISDITEAINAAI
        LV +LEAF++MGLNV QA+ SC + F+MEAI   + +  L ++ D+T+ +  A+
Subjt:  LVTVLEAFDKMGLNVLQAKVSCSECFSMEAIAVAEDEQSL-NISDITEAINAAI

AT2G40435.1 BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G56220.1)3.9e-0831.17Show/hide
Query:  MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLSMKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKG-GDR
        MVS  QKR   ++K +L+RS+ T   +   +S   +A  ++ KLK K+E   ++ +       E  +S         V VE + +   + V   K     
Subjt:  MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLSMKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKG-GDR

Query:  LVTVLEAFDKMGLNVLQAKVSCSECFSMEAIAVA-EDEQSLNISDITEAINAAI
        LV+VLEAF+ +GLNVL+A+ SC++ FS+ A+ +  ED ++++   + +A+  AI
Subjt:  LVTVLEAFDKMGLNVLQAKVSCSECFSMEAIAVA-EDEQSLNISDITEAINAAI

AT3G56220.1 transcription regulators2.1e-0630.77Show/hide
Query:  MVSTFQKRFDS-RKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLSMKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKG-GD
        MVS   KR  S R+K  L+RS+ T   +  ++S   +A  ++ KLK K+E I    ++  S +       +       V VE + +   +KV   K    
Subjt:  MVSTFQKRFDS-RKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLSMKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKG-GD

Query:  RLVTVLEAFDKMGLNVLQAKVSCSECFSMEAIAVA--EDEQSLNISDITEAINAAI
         LV VLE F+ +GL+V++A+VSC++ FS+ AI  +  +D   ++   + +A+  AI
Subjt:  RLVTVLEAFDKMGLNVLQAKVSCSECFSMEAIAVA--EDEQSLNISDITEAINAAI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTCTACGTTTCAGAAAAGATTCGACTCACGCAAGAAGCTACGCCTTGTTCGATCACTACCCACATACCAATCCTCTGGAAAACAGAGCAGTGAGTTCTGGAATGC
TGTTCTCTTCCTTCATAAGCTCAAGCTCAAGCTGGAAGCAATTGAGAGAGAGTATTCAAATCTATTGTCCATGAAAAGAGAATACTTAAACTCTGTAAAGCAAATTCATG
CCCCTAAGGAAGTGAAGGTTGAGAAGGTCGGAGAAGAGTTGAGAGTGAAAGTGAGATGCGAAAAGGGAGGGGACAGATTGGTTACAGTGTTGGAGGCATTTGACAAAATG
GGTCTTAATGTTCTGCAAGCTAAAGTTTCGTGTAGTGAATGTTTTTCCATGGAAGCCATTGCTGTCGCTGAAGATGAACAGTCGCTTAACATAAGTGATATAACTGAAGC
TATCAATGCAGCCATTGATGGAAAATCATTGGCTGCAAATCAGCAGCAGAAAGAAACTCCTAAGAAAGATGATGAAATTTAG
mRNA sequenceShow/hide mRNA sequence
GAGAGATGGGGTTCCTCTGTTTTCGAGTTCACATGACAACAAGAGGAAAGTAGCTGAGTGATTATTTCGATCTGGCCTTTCAAAACACACACACCCCCCCCAACTTTTTA
TGCTATAAAAAGCCAGACCCTTCATTTCAGGTCATATTCTTCACTAACTTGTCTTAATTGGTAAGCAAGTTCCAGCCAAACAGAGACACAGACATGGTTTCTACGTTTCA
GAAAAGATTCGACTCACGCAAGAAGCTACGCCTTGTTCGATCACTACCCACATACCAATCCTCTGGAAAACAGAGCAGTGAGTTCTGGAATGCTGTTCTCTTCCTTCATA
AGCTCAAGCTCAAGCTGGAAGCAATTGAGAGAGAGTATTCAAATCTATTGTCCATGAAAAGAGAATACTTAAACTCTGTAAAGCAAATTCATGCCCCTAAGGAAGTGAAG
GTTGAGAAGGTCGGAGAAGAGTTGAGAGTGAAAGTGAGATGCGAAAAGGGAGGGGACAGATTGGTTACAGTGTTGGAGGCATTTGACAAAATGGGTCTTAATGTTCTGCA
AGCTAAAGTTTCGTGTAGTGAATGTTTTTCCATGGAAGCCATTGCTGTCGCTGAAGATGAACAGTCGCTTAACATAAGTGATATAACTGAAGCTATCAATGCAGCCATTG
ATGGAAAATCATTGGCTGCAAATCAGCAGCAGAAAGAAACTCCTAAGAAAGATGATGAAATTTAGTCACTTCCTAAGCTATCAGTTGAATGAGAGTGTTTCTTTCCATCG
CAATCTCTTGTATTCTTCTTTCTTTCCTGCAAATTCAAAAAACAGAGTGGTTTTGGAAAAAAAAACAGAGTGGTTTTGGAAGGAAGAGGCTGAAACTGAAACAGCCGGTA
AATATGGAGCATATTAAATTAGATTCTAAAT
Protein sequenceShow/hide protein sequence
MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLSMKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKGGDRLVTVLEAFDKM
GLNVLQAKVSCSECFSMEAIAVAEDEQSLNISDITEAINAAIDGKSLAANQQQKETPKKDDEI