CuGenDBv2

Gene ID	CmoCh03G013490
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	cyclic phosphodiesterase-like
Genome location	Cmo_Chr03:9986614..9988026
RNA-Seq Expression	CmoCh03G013490
Synteny	CmoCh03G013490
Gene Ontology terms	GO:0009187 - cyclic nucleotide metabolic process (biological process) GO:0004113 - 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity (molecular function)
InterPro domains	IPR009097 - Cyclic phosphodiesterase IPR012386 - 2',3'-cyclic-nucleotide 3'-phosphodiesterase

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6581386.1 Cyclic phosphodiesterase, partial [Cucurbita argyrosperma subsp. sororia]

1.9e-103

97.92

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Query:  MANPESTPIQPSEGEKNVYSVWALPPEDVMARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
        MANPESTPIQPSEGEKNVYSVWALPPEDV ARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
Subjt:  MANPESTPIQPSEGEKNVYSVWALPPEDVMARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL

Query:  IHPTTQVVETSSHCCGHFGYKN-TPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS
        IHPTT+VVETSSHCCGHFGY N TPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS
Subjt:  IHPTTQVVETSSHCCGHFGYKN-TPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS

KAG7034670.1 Cyclic phosphodiesterase, partial [Cucurbita argyrosperma subsp. argyrosperma]

7.4e-103

97.92

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Query:  MANPESTPIQPSEGEKNVYSVWALPPEDVMARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
        MANPESTPIQPSEGEKNVYSVWALPPEDV ARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
Subjt:  MANPESTPIQPSEGEKNVYSVWALPPEDVMARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL

Query:  IHPTTQVVETSSHCCGHFGYKN-TPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS
        IHPTTQVVETSSHCCGHFG  N TPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS
Subjt:  IHPTTQVVETSSHCCGHFGYKN-TPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS

XP_022925823.1 cyclic phosphodiesterase-like [Cucurbita moschata]

1.4e-106

100

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Query:  MANPESTPIQPSEGEKNVYSVWALPPEDVMARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
        MANPESTPIQPSEGEKNVYSVWALPPEDVMARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
Subjt:  MANPESTPIQPSEGEKNVYSVWALPPEDVMARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL

Query:  IHPTTQVVETSSHCCGHFGYKNTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS
        IHPTTQVVETSSHCCGHFGYKNTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS
Subjt:  IHPTTQVVETSSHCCGHFGYKNTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS

XP_023522563.1 cyclic phosphodiesterase-like [Cucurbita pepo subsp. pepo]

1.9e-103

97.92

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Query:  MANPESTPIQPSEGEKNVYSVWALPPEDVMARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
        MANPESTPIQPSEGEKNVYSVWALPPEDV ARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
Subjt:  MANPESTPIQPSEGEKNVYSVWALPPEDVMARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL

Query:  IHPTTQVVETSSHCCGHFGYKN-TPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS
        IHPT +VVETSSHCCGHFGYKN TPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS
Subjt:  IHPTTQVVETSSHCCGHFGYKN-TPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS

XP_023543945.1 cyclic phosphodiesterase-like isoform X2 [Cucurbita pepo subsp. pepo]

1.8e-104

98.96

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Query:  MANPESTPIQPSEGEKNVYSVWALPPEDVMARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
        MANPESTPIQPSEGEKNVYSVWALPPEDV ARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
Subjt:  MANPESTPIQPSEGEKNVYSVWALPPEDVMARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL

Query:  IHPTTQVVETSSHCCGHFGYKN-TPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS
        IHPTTQVVETSSHCCGHFGYKN TPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS
Subjt:  IHPTTQVVETSSHCCGHFGYKN-TPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS

TrEMBL top hits

e value

%identity

Alignment

A0A1S3AYZ1 cyclic phosphodiesterase-like

3.0e-86

82.81

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Query:  MANPESTPIQPSEGEKNVYSVWALPPEDVMARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
        M NPES  IQ SE E NVYSVWALPPEDV ARI  LMNSLRSEFGGPQFEPHITVVGAIRLT +DALNKF +AC+G+KAYQATVD VSTGTFFYQCVFLL
Subjt:  MANPESTPIQPSEGEKNVYSVWALPPEDVMARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL

Query:  IHPTTQVVETSSHCCGHFGYKN-TPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS
        IHPTT+VVETSSH C HFG+KN TPYMPH+SLLYA+ISDE+KKQAKE+A+KLDEA+NGL FPITRLAL+KTDT DETLKSWEKI E DL SS
Subjt:  IHPTTQVVETSSHCCGHFGYKN-TPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS

A0A6J1EEQ8 cyclic phosphodiesterase-like

2.6e-85

81.77

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Query:  MANPESTPIQPSEGEKNVYSVWALPPEDVMARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
        MANP S PI+P EGE  +YSVWALPPEDV  +I +LM+SLRSEFGGP+FEPHITVVGAIRLT  DALNKFRSACEG+KAYQATVD VS GT FYQCVFLL
Subjt:  MANPESTPIQPSEGEKNVYSVWALPPEDVMARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL

Query:  IHPTTQVVETSSHCCGHFGYKN-TPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS
        IHPTT+VV+ SSHCCGHFGY N TPYMPHLSLLYANISDE KK+AKE+A+KL+EA+NGL  P+TRLALYKTDTGDETLKSWEKIAE DLPSS
Subjt:  IHPTTQVVETSSHCCGHFGYKN-TPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS

A0A6J1EGC1 cyclic phosphodiesterase-like

7.0e-107

100

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Query:  MANPESTPIQPSEGEKNVYSVWALPPEDVMARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
        MANPESTPIQPSEGEKNVYSVWALPPEDVMARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
Subjt:  MANPESTPIQPSEGEKNVYSVWALPPEDVMARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL

Query:  IHPTTQVVETSSHCCGHFGYKNTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS
        IHPTTQVVETSSHCCGHFGYKNTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS
Subjt:  IHPTTQVVETSSHCCGHFGYKNTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS

A0A6J1INY2 cyclic phosphodiesterase-like

4.7e-103

97.4

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Query:  MANPESTPIQPSEGEKNVYSVWALPPEDVMARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
        MANPES  IQPSEGEKNVYSVWALPPEDV ARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
Subjt:  MANPESTPIQPSEGEKNVYSVWALPPEDVMARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL

Query:  IHPTTQVVETSSHCCGHFGYKN-TPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS
        IHPTTQVVETSSHCCGHFGYKN TPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFP+TRLALYKTDTGDETLKSWEKIAEQDLPSS
Subjt:  IHPTTQVVETSSHCCGHFGYKN-TPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS

A0A6J1KNB2 cyclic phosphodiesterase-like

3.7e-84

81.25

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Query:  MANPESTPIQPSEGEKNVYSVWALPPEDVMARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
        MANP S PI+P EGE  +YSVWALPPEDV  +I +LM+SLRSEFGGP+FEPHITVVGAIRLT  DALNKFRSACEG+KAYQATVD VS GT FYQCVFLL
Subjt:  MANPESTPIQPSEGEKNVYSVWALPPEDVMARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL

Query:  IHPTTQVVETSSHCCGHFGYKN-TPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS
        IHPTT+VV+ SSHCCGHFG  N TPYMPHLSLLYANISDE KK+AKE+A+KL+EA+NGL  P+TRLALYKTDTGDETLKSWEKIAE DLPSS
Subjt:  IHPTTQVVETSSHCCGHFGYKN-TPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS

SwissProt top hits

e value

%identity

Alignment

O04147 Cyclic phosphodiesterase

1.5e-53

58.38

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Query:  EGEKNVYSVWALPPEDVMARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLIHPTTQVVETSS
        E +K+VYSVWALP E+   R + LM +LRSEF GP+F PH+TV  +  LT D+A   F SAC+GLKAY ATVD VSTGTFF+QCVFLL+  T +V+E   
Subjt:  EGEKNVYSVWALPPEDVMARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLIHPTTQVVETSS

Query:  HCCGHFGYK-NTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIA
        HC  HF     TPYMPHLSLLYA +++E+KK A+E A  LD +++GLSF + RLAL KTDT D+TL++WE +A
Subjt:  HCCGHFGYK-NTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIA

Arabidopsis top hits

e value

%identity

Alignment

AT4G18930.1 RNA ligase/cyclic nucleotide phosphodiesterase family protein

1.0e-54

58.38

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Query:  EGEKNVYSVWALPPEDVMARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLIHPTTQVVETSS
        E +K+VYSVWALP E+   R + LM +LRSEF GP+F PH+TV  +  LT D+A   F SAC+GLKAY ATVD VSTGTFF+QCVFLL+  T +V+E   
Subjt:  EGEKNVYSVWALPPEDVMARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLIHPTTQVVETSS

Query:  HCCGHFGYK-NTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIA
        HC  HF     TPYMPHLSLLYA +++E+KK A+E A  LD +++GLSF + RLAL KTDT D+TL++WE +A
Subjt:  HCCGHFGYK-NTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIA

AT4G18940.1 RNA ligase/cyclic nucleotide phosphodiesterase family protein

1.6e-42

42.71

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Query:  MANPESTPIQP------SEGEKNVYSVWALPPEDVMARIRTLMNSLRSEFGGPQFEPHITVVGAI--RLTLDDALNKFRSACEGLKAYQATVDCVSTGTF
        M    +TP+QP       E EK +Y++WA+P +DV  R++ LM  LRSEFGGP F+PH+T+VG    +LT  +A   F+SACEG K Y ATVD VS GT 
Subjt:  MANPESTPIQP------SEGEKNVYSVWALPPEDVMARIRTLMNSLRSEFGGPQFEPHITVVGAI--RLTLDDALNKFRSACEGLKAYQATVDCVSTGTF

Query:  FYQCVFLLIHPTTQVVETSSHCCGHF-GYKNTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPS
        ++QC+++ +  T +V+  + H   HF  +    Y+PH+S+LY ++++ +KK+A E A  LD +++GL+F I R+AL+ TD     + SW K+ E  L S
Subjt:  FYQCVFLLIHPTTQVVETSSHCCGHF-GYKNTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPS

Sequences

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CDS sequence

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ATGGCGAACCCAGAATCCACCCCTATCCAACCCTCTGAAGGGGAGAAGAACGTGTATTCGGTCTGGGCTCTTCCTCCAGAAGATGTTATGGCCAGAATCAGGACT
CTCATGAACAGCCTCAGATCCGAGTTCGGCGGGCCCCAATTCGAGCCACATATCACTGTCGTTGGGGCTATTCGTCTCACCCTTGACGATGCCCTCAACAAATTC
CGCTCGGCTTGCGAGGGGCTTAAGGCTTATCAAGCCACCGTCGATTGTGTATCTACCGGAACCTTCTTCTACCAGTGTGTTTTTCTCCTTATTCATCCTACCACT
CAGGTGGTGGAGACTAGTTCACATTGCTGTGGACATTTTGGTTACAAGAATACCCCTTACATGCCGCATTTGAGCCTACTGTATGCCAACATATCAGATGAACAA
AAGAAGCAGGCAAAAGAACTAGCAGAGAAGCTGGACGAAGCCATTAATGGCCTGAGCTTCCCCATCACTCGTCTTGCACTATACAAAACAGACACTGGAGATGAA
ACTCTGAAGTCCTGGGAGAAAATTGCAGAACAGGATCTTCCTTCAAGTTAA

mRNA sequence

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Protein sequence

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MANPESTPIQPSEGEKNVYSVWALPPEDVMARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLIHPTT
QVVETSSHCCGHFGYKNTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS

CmoCh03G013490 (gene) of Cucurbita moschata (Rifu) v1 genome