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CmoCh03G013980 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh03G013980
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRING-H2 finger protein ATL3
Genome locationCmo_Chr03:10202480..10203055
RNA-Seq ExpressionCmoCh03G013980
SyntenyCmoCh03G013980
Gene Ontology termsGO:0008152 - metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB3462653.1 unnamed protein product [Digitaria exilis]1.4e-3955.79Show/hide
Query:  AFTICSSDFHVLSSWTNAKMYPSSSFSPEFPSFCKKNGSPPNFLPP-----------STFANPETFGHGSAIARYAYRVFRPRRFLFTIPASRFTCSFSS
        AFT  SSD    SS T+ ++YPSSS     PS   K GSPPN   P           ST ANP+T GHGSA ARYAY VF P +F FTIP SRFT   + 
Subjt:  AFTICSSDFHVLSSWTNAKMYPSSSFSPEFPSFCKKNGSPPNFLPP-----------STFANPETFGHGSAIARYAYRVFRPRRFLFTIPASRFTCSFSS

Query:  LIIGRRVDFPVLKFSRISDSTLFKFSSHSLKMESGGVMQDPITTTSSVSGSSQAFHKWKQKVSGDSTQIKSSEFVAFLGRIPNRDFLFLS
            RRVD PV    RIS STL + SS SLKMES GVMQDP TTTS V+ SS AFHKWKQK SG ST   S E  A+LG  PN D   LS
Subjt:  LIIGRRVDFPVLKFSRISDSTLFKFSSHSLKMESGGVMQDPITTTSSVSGSSQAFHKWKQKVSGDSTQIKSSEFVAFLGRIPNRDFLFLS

CAB3466536.1 unnamed protein product [Digitaria exilis]3.2e-3955.79Show/hide
Query:  AFTICSSDFHVLSSWTNAKMYPSSSFSPEFPSFCKKNGSPPNFLPP-----------STFANPETFGHGSAIARYAYRVFRPRRFLFTIPASRFTCSFSS
        AFT  SSD    SS T+ +MYPSSS     PS   K GSPPN   P           ST ANP+T GHGSA ARYAY VF P +  FTIP SRFT   + 
Subjt:  AFTICSSDFHVLSSWTNAKMYPSSSFSPEFPSFCKKNGSPPNFLPP-----------STFANPETFGHGSAIARYAYRVFRPRRFLFTIPASRFTCSFSS

Query:  LIIGRRVDFPVLKFSRISDSTLFKFSSHSLKMESGGVMQDPITTTSSVSGSSQAFHKWKQKVSGDSTQIKSSEFVAFLGRIPNRDFLFLS
            RRVD PV    RIS STL + SS SLKMES GVMQDP TTTS V+ SS AFHKWKQK SG ST   S E  A+LG  PN D   LS
Subjt:  LIIGRRVDFPVLKFSRISDSTLFKFSSHSLKMESGGVMQDPITTTSSVSGSSQAFHKWKQKVSGDSTQIKSSEFVAFLGRIPNRDFLFLS

GEV89608.1 polyphenol oxidase I, chloroplastic-like [Tanacetum cinerariifolium]2.7e-1452.81Show/hide
Query:  IIGRRVDFPVLKFSRISDSTLFKFSSHSLKMESGGVMQDPITTTSSVSGSSQAFHKWKQKVSGDSTQIKSSEFVAFLGRIPNRDFLFLS
        +I RRVDFPV KFSR  D+ LF  S HSLK+ES G++ DPITT+S V  SS A+ +WKQ   G ST +  S   ++L  IP RD   LS
Subjt:  IIGRRVDFPVLKFSRISDSTLFKFSSHSLKMESGGVMQDPITTTSSVSGSSQAFHKWKQKVSGDSTQIKSSEFVAFLGRIPNRDFLFLS

ONM24029.1 RING-H2 finger protein ATL3 [Zea mays]2.6e-0956.79Show/hide
Query:  STFANPETFGHGSAIARYAYRVFRPRRFLFTIPASRFTCSFSSLIIGRRVDFPVLKFSRISDSTL--FKFSSHSLKMESGG
        STFANP+T GH SA+ RY YRV RP  F FTIP+SRFTC+ +      R+D  V   S IS STL  ++ SS SLKMES G
Subjt:  STFANPETFGHGSAIARYAYRVFRPRRFLFTIPASRFTCSFSSLIIGRRVDFPVLKFSRISDSTL--FKFSSHSLKMESGG

PKI41468.1 hypothetical protein CRG98_038143 [Punica granatum]2.1e-1457.95Show/hide
Query:  IGRRVDFPVLKFSRISDSTLFKFSSHSLKMESGGVMQDPITTTSSVSGSSQAFHKWKQKVSGDSTQIKSSEFVAFLGRIPNRDFLFLS
        +G RVD P+L+FS IS+  LFK SS SLK+ESGGV  DPITTTSSVSG S AFHKWKQK SG             +  IP   F FLS
Subjt:  IGRRVDFPVLKFSRISDSTLFKFSSHSLKMESGGVMQDPITTTSSVSGSSQAFHKWKQKVSGDSTQIKSSEFVAFLGRIPNRDFLFLS

TrEMBL top hitse value%identityAlignment
A0A1D6EX09 RING-H2 finger protein ATL31.3e-0956.79Show/hide
Query:  STFANPETFGHGSAIARYAYRVFRPRRFLFTIPASRFTCSFSSLIIGRRVDFPVLKFSRISDSTL--FKFSSHSLKMESGG
        STFANP+T GH SA+ RY YRV RP  F FTIP+SRFTC+ +      R+D  V   S IS STL  ++ SS SLKMES G
Subjt:  STFANPETFGHGSAIARYAYRVFRPRRFLFTIPASRFTCSFSSLIIGRRVDFPVLKFSRISDSTL--FKFSSHSLKMESGG

A0A2I0IBU6 Uncharacterized protein1.0e-1457.95Show/hide
Query:  IGRRVDFPVLKFSRISDSTLFKFSSHSLKMESGGVMQDPITTTSSVSGSSQAFHKWKQKVSGDSTQIKSSEFVAFLGRIPNRDFLFLS
        +G RVD P+L+FS IS+  LFK SS SLK+ESGGV  DPITTTSSVSG S AFHKWKQK SG             +  IP   F FLS
Subjt:  IGRRVDFPVLKFSRISDSTLFKFSSHSLKMESGGVMQDPITTTSSVSGSSQAFHKWKQKVSGDSTQIKSSEFVAFLGRIPNRDFLFLS

A0A2P2JSX0 Uncharacterized protein MANES_15G1224009.1e-1683.05Show/hide
Query:  MESGGVMQDPITTTSSVSGSSQAFHKWKQKVSGDSTQIKSSEFVAFLGRIPNRDFLFLS
        MESGGVMQDPITTTSS SGSS AFHKWKQKVSGDSTQI S    AF  RIPN DFLFLS
Subjt:  MESGGVMQDPITTTSSVSGSSQAFHKWKQKVSGDSTQIKSSEFVAFLGRIPNRDFLFLS

A0A5A7QMI0 Protein kinase superfamily protein1.2e-0764.15Show/hide
Query:  MQDPITTTSSVSGSSQAFHKWKQKVSGDSTQIKSSEFVAFLGRIPNRDFLFLS
        M +PITTTSSVSGSS AFH+WKQK SG ST +      AFL   PNRD LF S
Subjt:  MQDPITTTSSVSGSSQAFHKWKQKVSGDSTQIKSSEFVAFLGRIPNRDFLFLS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTTCACTATCTGTAGCTCTGATTTCCATGTCCTTTCATCGTGGACGAACGCTAAAATGTACCCTTCATCTTCCTTCTCCCCTGAATTCCCTTCTTTCTGT
AAAAAAAACGGCTCCCCACCGAATTTTCTACCGCCATCAACCTTCGCGAATCCCGAAACCTTCGGCCATGGCTCTGCAATCGCAAGATACGCATATCGGGTTTTC
CGCCCCAGACGGTTTCTATTCACCATTCCGGCTTCTAGATTCACCTGCTCCTTCTCATCGCTGATAATTGGGCGGCGCGTGGATTTCCCCGTTCTCAAATTCAGC
CGAATTTCCGACAGTACGCTTTTTAAATTCTCGTCGCACTCATTGAAAATGGAATCCGGCGGCGTCATGCAAGACCCAATAACCACGACCTCCTCTGTCTCCGGC
TCCTCCCAAGCATTCCACAAATGGAAGCAGAAGGTGTCCGGCGATTCCACCCAGATTAAATCATCGGAATTTGTGGCATTTTTAGGGAGAATTCCGAATCGGGAT
TTCTTGTTCTTGTCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTTCACTATCTGTAGCTCTGATTTCCATGTCCTTTCATCGTGGACGAACGCTAAAATGTACCCTTCATCTTCCTTCTCCCCTGAATTCCCTTCTTTCTGT
AAAAAAAACGGCTCCCCACCGAATTTTCTACCGCCATCAACCTTCGCGAATCCCGAAACCTTCGGCCATGGCTCTGCAATCGCAAGATACGCATATCGGGTTTTC
CGCCCCAGACGGTTTCTATTCACCATTCCGGCTTCTAGATTCACCTGCTCCTTCTCATCGCTGATAATTGGGCGGCGCGTGGATTTCCCCGTTCTCAAATTCAGC
CGAATTTCCGACAGTACGCTTTTTAAATTCTCGTCGCACTCATTGAAAATGGAATCCGGCGGCGTCATGCAAGACCCAATAACCACGACCTCCTCTGTCTCCGGC
TCCTCCCAAGCATTCCACAAATGGAAGCAGAAGGTGTCCGGCGATTCCACCCAGATTAAATCATCGGAATTTGTGGCATTTTTAGGGAGAATTCCGAATCGGGAT
TTCTTGTTCTTGTCGTAA
Protein sequenceShow/hide protein sequence
MAFTICSSDFHVLSSWTNAKMYPSSSFSPEFPSFCKKNGSPPNFLPPSTFANPETFGHGSAIARYAYRVFRPRRFLFTIPASRFTCSFSSLIIGRRVDFPVLKFS
RISDSTLFKFSSHSLKMESGGVMQDPITTTSSVSGSSQAFHKWKQKVSGDSTQIKSSEFVAFLGRIPNRDFLFLS