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CmoCh03G014260 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh03G014260
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionplastid transcriptionally active 12
Genome locationCmo_Chr03:10321402..10323732
RNA-Seq ExpressionCmoCh03G014260
SyntenyCmoCh03G014260
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0090228 - positive regulation of red or far-red light signaling pathway (biological process)
GO:0005634 - nucleus (cellular component)
GO:0009507 - chloroplast (cellular component)
InterPro domainsIPR034581 - Protein PLASTID TRANSCRIPTIONALLY ACTIVE 12


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OWM68015.1 hypothetical protein CDL15_Pgr017583 [Punica granatum]1.6e-0459.57Show/hide
Query:  DDLSVFLQAMAGTGLIKLYGEHPTLTEASLYRA-GDIFTRKRGKINA
        D  +VFL+AMA TG +KLYG+HPTLTE SLYRA   IF  +R ++ A
Subjt:  DDLSVFLQAMAGTGLIKLYGEHPTLTEASLYRA-GDIFTRKRGKINA
PKI41212.1 hypothetical protein CRG98_038400 [Punica granatum]1.6e-0459.57Show/hide
Query:  DDLSVFLQAMAGTGLIKLYGEHPTLTEASLYRA-GDIFTRKRGKINA
        D  +VFL+AMA TG +KLYG+HPTLTE SLYRA   IF  +R ++ A
Subjt:  DDLSVFLQAMAGTGLIKLYGEHPTLTEASLYRA-GDIFTRKRGKINA
XP_023912871.1 protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic [Quercus suber]2.7e-0478.79Show/hide
Query:  DDLSVFLQAMAGTGLIKLYGEHPTLTEASLYRA
        D  +VFL+AMA TG IKLYGEHPTLTE SLYRA
Subjt:  DDLSVFLQAMAGTGLIKLYGEHPTLTEASLYRA
XP_030971381.1 protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic [Quercus lobata]2.7e-0478.79Show/hide
Query:  DDLSVFLQAMAGTGLIKLYGEHPTLTEASLYRA
        D  +VFL+AMA TG IKLYGEHPTLTE SLYRA
Subjt:  DDLSVFLQAMAGTGLIKLYGEHPTLTEASLYRA
XP_038883750.1 protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic [Benincasa hispida]2.1e-0486.67Show/hide
Query:  SVFLQAMAGTGLIKLYGEHPTLTEASLYRA
        +VFL+AMA TG IKLYGEHPTLTEASLYRA
Subjt:  SVFLQAMAGTGLIKLYGEHPTLTEASLYRA
TrEMBL top hitse value%identityAlignment
A0A1R3HJ80 Uncharacterized protein1.7e-0475.76Show/hide
Query:  DDLSVFLQAMAGTGLIKLYGEHPTLTEASLYRA
        D  +VFL+AMA TG +KLYGEHPTLTE SLYRA
Subjt:  DDLSVFLQAMAGTGLIKLYGEHPTLTEASLYRA
A0A218W5H3 Uncharacterized protein7.7e-0559.57Show/hide
Query:  DDLSVFLQAMAGTGLIKLYGEHPTLTEASLYRA-GDIFTRKRGKINA
        D  +VFL+AMA TG +KLYG+HPTLTE SLYRA   IF  +R ++ A
Subjt:  DDLSVFLQAMAGTGLIKLYGEHPTLTEASLYRA-GDIFTRKRGKINA
A0A2I0IB32 Uncharacterized protein7.7e-0559.57Show/hide
Query:  DDLSVFLQAMAGTGLIKLYGEHPTLTEASLYRA-GDIFTRKRGKINA
        D  +VFL+AMA TG +KLYG+HPTLTE SLYRA   IF  +R ++ A
Subjt:  DDLSVFLQAMAGTGLIKLYGEHPTLTEASLYRA-GDIFTRKRGKINA
A0A2I4GUX2 protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic1.7e-0475.76Show/hide
Query:  DDLSVFLQAMAGTGLIKLYGEHPTLTEASLYRA
        D  +VFL+AMA TG +KLYGEHPTLTE SLYRA
Subjt:  DDLSVFLQAMAGTGLIKLYGEHPTLTEASLYRA
A0A7N2LQ57 Uncharacterized protein1.3e-0478.79Show/hide
Query:  DDLSVFLQAMAGTGLIKLYGEHPTLTEASLYRA
        D  +VFL+AMA TG IKLYGEHPTLTE SLYRA
Subjt:  DDLSVFLQAMAGTGLIKLYGEHPTLTEASLYRA
SwissProt top hitse value%identityAlignment
F4IHY7 Protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic8.8e-0676.67Show/hide
Query:  SVFLQAMAGTGLIKLYGEHPTLTEASLYRA
        +VFL+AMA TG +KLYGE PTLTE SLYRA
Subjt:  SVFLQAMAGTGLIKLYGEHPTLTEASLYRA
Arabidopsis top hitse value%identityAlignment
AT2G34640.1 plastid transcriptionally active 126.2e-0776.67Show/hide
Query:  SVFLQAMAGTGLIKLYGEHPTLTEASLYRA
        +VFL+AMA TG +KLYGE PTLTE SLYRA
Subjt:  SVFLQAMAGTGLIKLYGEHPTLTEASLYRA
AT2G34640.1 plastid transcriptionally active 121.6e-0251.72Show/hide
Query:  IFTRKRGKINAVADLDDALAQAIDIGEND
        + T+++ +   V D+DDA+AQA+DIGEND
Subjt:  IFTRKRGKINAVADLDDALAQAIDIGEND

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGATGATTTGTCTGTTTTTCTCCAAGCAATGGCAGGGACTGGGCTGATAAAGCTTTATGGTGAACATCCAACATTAACCGAAGCTTCTCTATACAGGGCT
GGCGACATCTTTACAAGGAAGAGAGGGAAGATAAACGCTGTGGCAGATCTGGATGATGCCTTGGCCCAAGCAATTGATATTGGTGAAAATGACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACGATGATTTGTCTGTTTTTCTCCAAGCAATGGCAGGGACTGGGCTGATAAAGCTTTATGGTGAACATCCAACATTAACCGAAGCTTCTCTATACAGGGCT
GGCGACATCTTTACAAGGAAGAGAGGGAAGATAAACGCTGTGGCAGATCTGGATGATGCCTTGGCCCAAGCAATTGATATTGGTGAAAATGACTGAATTCATGGG
CCAAATCATCTTAATCTCAGTTCAAATGAGGCATGAAGGTTTGCATTTTTAACATTTAAGAGGTTTTCTTGAGTCTTTTATAGAGGGACTATTAAG
Protein sequenceShow/hide protein sequence
MDDDLSVFLQAMAGTGLIKLYGEHPTLTEASLYRAGDIFTRKRGKINAVADLDDALAQAIDIGEND