; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh03G014830 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh03G014830
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRRM domain-containing protein
Genome locationCmo_Chr03:10637931..10638744
RNA-Seq ExpressionCmoCh03G014830
SyntenyCmoCh03G014830
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0016607 - nuclear speck (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052443.1 glycine-rich RNA-binding protein 4 [Cucumis melo var. makuwa]2.7e-2971.13Show/hide
Query:  MTVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKVKLHLALSLPHEKFDGRTIYVELAKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADCWY
        M VLLAKDR TK PKGYAFIQYT QDDAMLALENMDCK+            FDGRTIYVE+AKPGSGSF GYP TSGPPKER  P +  E++ADCWY
Subjt:  MTVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKVKLHLALSLPHEKFDGRTIYVELAKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADCWY

XP_008439484.1 PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo]1.0e-2871.58Show/hide
Query:  VLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKVKLHLALSLPHEKFDGRTIYVELAKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADCWY
        VLLAKDR TK PKGYAFIQYT QDDAMLALENMDCK+            FDGRTIYVE+AKPGSGSF GYP TSGPPKER  P +  E++ADCWY
Subjt:  VLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKVKLHLALSLPHEKFDGRTIYVELAKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADCWY

XP_022926008.1 small RNA-binding protein 11, chloroplastic [Cucurbita moschata]1.5e-3887.37Show/hide
Query:  VLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKVKLHLALSLPHEKFDGRTIYVELAKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADCWY
        VLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCK            KFDGRTIYVELAKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADCWY
Subjt:  VLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKVKLHLALSLPHEKFDGRTIYVELAKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADCWY

XP_022977992.1 small RNA-binding protein 11, chloroplastic [Cucurbita maxima]9.4e-3886.32Show/hide
Query:  VLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKVKLHLALSLPHEKFDGRTIYVELAKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADCWY
        VLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCK            KFDGRTIYVELAKPGSGSF GYPVTSGPPKERPIPKLVPEEVADCWY
Subjt:  VLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKVKLHLALSLPHEKFDGRTIYVELAKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADCWY

XP_023543104.1 small RNA-binding protein 11, chloroplastic [Cucurbita pepo subsp. pepo]1.5e-3887.37Show/hide
Query:  VLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKVKLHLALSLPHEKFDGRTIYVELAKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADCWY
        VLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCK            KFDGRTIYVELAKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADCWY
Subjt:  VLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKVKLHLALSLPHEKFDGRTIYVELAKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADCWY

TrEMBL top hitse value%identityAlignment
A0A1S3AYG0 glycine-rich RNA-binding protein 4, mitochondrial5.0e-2971.58Show/hide
Query:  VLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKVKLHLALSLPHEKFDGRTIYVELAKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADCWY
        VLLAKDR TK PKGYAFIQYT QDDAMLALENMDCK+            FDGRTIYVE+AKPGSGSF GYP TSGPPKER  P +  E++ADCWY
Subjt:  VLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKVKLHLALSLPHEKFDGRTIYVELAKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADCWY

A0A5A7U963 Glycine-rich RNA-binding protein 41.3e-2971.13Show/hide
Query:  MTVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKVKLHLALSLPHEKFDGRTIYVELAKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADCWY
        M VLLAKDR TK PKGYAFIQYT QDDAMLALENMDCK+            FDGRTIYVE+AKPGSGSF GYP TSGPPKER  P +  E++ADCWY
Subjt:  MTVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKVKLHLALSLPHEKFDGRTIYVELAKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADCWY

A0A6J1CXC0 glycine-rich RNA-binding protein 4, mitochondrial9.5e-2872.63Show/hide
Query:  VLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKVKLHLALSLPHEKFDGRTIYVELAKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADCWY
        VLLAKDR+TK P+GYAFIQYT QDDAMLALENMD K            KFDGRTIYVE+A+PGS SF GYP TSGPPKER  PKL  EEVADCWY
Subjt:  VLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKVKLHLALSLPHEKFDGRTIYVELAKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADCWY

A0A6J1EGU7 small RNA-binding protein 11, chloroplastic7.0e-3987.37Show/hide
Query:  VLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKVKLHLALSLPHEKFDGRTIYVELAKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADCWY
        VLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCK            KFDGRTIYVELAKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADCWY
Subjt:  VLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKVKLHLALSLPHEKFDGRTIYVELAKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADCWY

A0A6J1IJY1 small RNA-binding protein 11, chloroplastic4.6e-3886.32Show/hide
Query:  VLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKVKLHLALSLPHEKFDGRTIYVELAKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADCWY
        VLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCK            KFDGRTIYVELAKPGSGSF GYPVTSGPPKERPIPKLVPEEVADCWY
Subjt:  VLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKVKLHLALSLPHEKFDGRTIYVELAKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADCWY

SwissProt top hitse value%identityAlignment
Q9FX45 Organelle RRM domain-containing protein 6, chloroplastic1.4e-0434.57Show/hide
Query:  LAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKVKLHLALSLPHEKF-DGRTIYVELAKPGSGSFRGYPVTSGP-PKERP
        +  D++   PKG+AF++Y ++++AM A++ M             H KF DGR I+VE AK  S   R  P    P P+ +P
Subjt:  LAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKVKLHLALSLPHEKF-DGRTIYVELAKPGSGSFRGYPVTSGP-PKERP

Arabidopsis top hitse value%identityAlignment
AT1G73530.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.0e-0534.57Show/hide
Query:  LAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKVKLHLALSLPHEKF-DGRTIYVELAKPGSGSFRGYPVTSGP-PKERP
        +  D++   PKG+AF++Y ++++AM A++ M             H KF DGR I+VE AK  S   R  P    P P+ +P
Subjt:  LAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKVKLHLALSLPHEKF-DGRTIYVELAKPGSGSFRGYPVTSGP-PKERP

AT3G46020.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.7e-0540.68Show/hide
Query:  LAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKVKLHLALSLPHEKFDGRTIYVELAK
        L +D  T+ PKG+ FI + S+DDA  AL+++D K+             DGR I+VE+AK
Subjt:  LAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKVKLHLALSLPHEKFDGRTIYVELAK

AT4G20030.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.2e-1948.96Show/hide
Query:  VLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKVKLHLALSLPHEKFDGRTIYVELAKPGSGSFRGYPVTSGPPKERPIP-KLVPEEVADCWY
        V L KD   K  KGYAFIQ+TSQDDA LA+E MD ++            ++GR IY+++AKPG   F+G P TSGPP++   P +   +EVADCWY
Subjt:  VLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKVKLHLALSLPHEKFDGRTIYVELAKPGSGSFRGYPVTSGPPKERPIP-KLVPEEVADCWY

AT5G59860.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.5e-0438.98Show/hide
Query:  LAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKVKLHLALSLPHEKFDGRTIYVELAK
        L KD+ T+ PKG+ FI + S+DDA  AL+ ++ K+             +GR I+VE AK
Subjt:  LAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKVKLHLALSLPHEKFDGRTIYVELAK

AT5G64200.1 ortholog of human splicing factor SC352.5e-0432.93Show/hide
Query:  VLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKVKLHLALSLPHEKFDGRTIYVELAK--PGSGSFRGYPVTSGPPKER
        V + +DR T   +G+AF++Y  +D+A  A+E +D +V             DGR I V+ AK  P +       V   PPK R
Subjt:  VLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKVKLHLALSLPHEKFDGRTIYVELAK--PGSGSFRGYPVTSGPPKER


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGTGTTATTAGCAAAAGATCGATTAACCAAAACACCAAAAGGTTATGCGTTCATCCAATACACTAGCCAAGACGATGCGATGCTTGCGCTGGAAAATATGGATTG
CAAGGTTAAACTTCATCTAGCTCTGTCATTGCCACATGAGAAATTTGATGGAAGGACGATCTATGTGGAACTTGCAAAACCTGGCAGTGGATCTTTTCGAGGATATCCGG
TAACCTCTGGACCCCCGAAAGAGCGGCCTATACCTAAATTGGTGCCAGAAGAGGTAGCAGATTGCTGGTATTGA
mRNA sequenceShow/hide mRNA sequence
ATGACAGTGTTATTAGCAAAAGATCGATTAACCAAAACACCAAAAGGTTATGCGTTCATCCAATACACTAGCCAAGACGATGCGATGCTTGCGCTGGAAAATATGGATTG
CAAGGTTAAACTTCATCTAGCTCTGTCATTGCCACATGAGAAATTTGATGGAAGGACGATCTATGTGGAACTTGCAAAACCTGGCAGTGGATCTTTTCGAGGATATCCGG
TAACCTCTGGACCCCCGAAAGAGCGGCCTATACCTAAATTGGTGCCAGAAGAGGTAGCAGATTGCTGGTATTGATCTTGTTCTTACTGAGATACACAATATAGGACAGAG
ATGGGTTAACAGTTAATGACAGTTGGGCACCATGAGATCAATCCCAAAGAATCTGTGAGGGTTGAAGTGTTTGTTGTGATGGATTCCTTACATTCCTCTTAATAGTTTCA
GGCTTTAGATGCTGATGCCATCCTGCAACTTTGATATCTATTTGTATTTACACTGTTTACGACACTTGATGCGTCTTCTAGTGCATATTGCTGTATGTGGCGTAGCAATT
GAGATTATGGATAATGTGGTAATTCATAAAGCAAATGCTTCTACTACTCTGTTGTTTTTTGGTCCAAATTCAACGTGTATTATGTTTTTTTAGTCGGTTTTAATGTCATA
ACTTACACCAAACTTTTGGAATGATAATTGAAGCCTCAAGAAGTGTGCCCCATTGACTAAGATTCATAGGTTTTTAGGGACTCCTATAAGAGGTTACAGGGCGTG
Protein sequenceShow/hide protein sequence
MTVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKVKLHLALSLPHEKFDGRTIYVELAKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADCWY