; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh03G014840 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh03G014840
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRRM domain-containing protein
Genome locationCmo_Chr03:10638769..10640684
RNA-Seq ExpressionCmoCh03G014840
SyntenyCmoCh03G014840
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0006657 - CDP-choline pathway (biological process)
GO:0016607 - nuclear speck (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0004105 - choline-phosphate cytidylyltransferase activity (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134540.1 glycine-rich RNA-binding protein 4, mitochondrial [Cucumis sativus]6.0e-2484.93Show/hide
Query:  MWAATVSFPSLSNLRGPIPLSNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENRLQEEFSNFGEIAE
        MWA TVSFPS+SNLRGPI  +NRL +S R SLNLRASF DYPLASRLMVRNLPYSTNE+RLQEEFSNFGEIAE
Subjt:  MWAATVSFPSLSNLRGPIPLSNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENRLQEEFSNFGEIAE
XP_008439484.1 PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo]1.1e-2280.82Show/hide
Query:  MWAATVSFPSLSNLRGPIPLSNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENRLQEEFSNFGEIAE
        MWA TVS PS+SNLRGP+  +N L +S R SLNLRASF DYPLASRLMVRNLPYSTNE+RLQEEFSNFGEIAE
Subjt:  MWAATVSFPSLSNLRGPIPLSNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENRLQEEFSNFGEIAE
XP_022926008.1 small RNA-binding protein 11, chloroplastic [Cucurbita moschata]2.3e-31100Show/hide
Query:  MWAATVSFPSLSNLRGPIPLSNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENRLQEEFSNFGEIAE
        MWAATVSFPSLSNLRGPIPLSNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENRLQEEFSNFGEIAE
Subjt:  MWAATVSFPSLSNLRGPIPLSNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENRLQEEFSNFGEIAE
XP_022977992.1 small RNA-binding protein 11, chloroplastic [Cucurbita maxima]5.1e-3198.63Show/hide
Query:  MWAATVSFPSLSNLRGPIPLSNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENRLQEEFSNFGEIAE
        MWAATVSFPSLSNLRGPIPL+NRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENRLQEEFSNFGEIAE
Subjt:  MWAATVSFPSLSNLRGPIPLSNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENRLQEEFSNFGEIAE
XP_023543104.1 small RNA-binding protein 11, chloroplastic [Cucurbita pepo subsp. pepo]5.1e-3198.63Show/hide
Query:  MWAATVSFPSLSNLRGPIPLSNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENRLQEEFSNFGEIAE
        MWAATVSFPSLSNLRGPIPL+NRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENRLQEEFSNFGEIAE
Subjt:  MWAATVSFPSLSNLRGPIPLSNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENRLQEEFSNFGEIAE
TrEMBL top hitse value%identityAlignment
A0A0A0KL21 RRM domain-containing protein2.9e-2484.93Show/hide
Query:  MWAATVSFPSLSNLRGPIPLSNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENRLQEEFSNFGEIAE
        MWA TVSFPS+SNLRGPI  +NRL +S R SLNLRASF DYPLASRLMVRNLPYSTNE+RLQEEFSNFGEIAE
Subjt:  MWAATVSFPSLSNLRGPIPLSNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENRLQEEFSNFGEIAE
A0A1S3AYG0 glycine-rich RNA-binding protein 4, mitochondrial5.5e-2380.82Show/hide
Query:  MWAATVSFPSLSNLRGPIPLSNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENRLQEEFSNFGEIAE
        MWA TVS PS+SNLRGP+  +N L +S R SLNLRASF DYPLASRLMVRNLPYSTNE+RLQEEFSNFGEIAE
Subjt:  MWAATVSFPSLSNLRGPIPLSNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENRLQEEFSNFGEIAE
A0A6J1CXC0 glycine-rich RNA-binding protein 4, mitochondrial2.6e-2075.34Show/hide
Query:  MWAATVSFPSLSNLRGPIPLSNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENRLQEEFSNFGEIAE
        MWA+TVSFP L N R PI LSN    + RQSLNLRASF DYPLASR+MVRNLPYST+E RLQEEFS+FGE+AE
Subjt:  MWAATVSFPSLSNLRGPIPLSNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENRLQEEFSNFGEIAE
A0A6J1EGU7 small RNA-binding protein 11, chloroplastic1.1e-31100Show/hide
Query:  MWAATVSFPSLSNLRGPIPLSNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENRLQEEFSNFGEIAE
        MWAATVSFPSLSNLRGPIPLSNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENRLQEEFSNFGEIAE
Subjt:  MWAATVSFPSLSNLRGPIPLSNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENRLQEEFSNFGEIAE
A0A6J1IJY1 small RNA-binding protein 11, chloroplastic2.5e-3198.63Show/hide
Query:  MWAATVSFPSLSNLRGPIPLSNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENRLQEEFSNFGEIAE
        MWAATVSFPSLSNLRGPIPL+NRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENRLQEEFSNFGEIAE
Subjt:  MWAATVSFPSLSNLRGPIPLSNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENRLQEEFSNFGEIAE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G20030.1 RNA-binding (RRM/RBD/RNP motifs) family protein3.3e-1250.68Show/hide
Query:  MWAATVSFPSLSNLRGPIPLSNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENRLQEEFSNFGEIAE
        MW+AT+SFPS       +P    L   K     ++AS  +YPLAS++MVRNLP+ST+E+ L+ EFS FGEIAE
Subjt:  MWAATVSFPSLSNLRGPIPLSNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENRLQEEFSNFGEIAE
AT5G08695.1 RNA-binding (RRM/RBD/RNP motifs) family protein9.7e-0450Show/hide
Query:  SLNLRASFSDYPL-ASRLMVRNLPYSTNENRLQEEFSNFGEIAE
        ++ + A  SD  L A RL V  LPYST E  L E FS FG+I+E
Subjt:  SLNLRASFSDYPL-ASRLMVRNLPYSTNENRLQEEFSNFGEIAE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGGCAGCCACCGTCTCCTTCCCTTCACTTTCTAACCTCCGGGGACCCATTCCTCTGAGTAATCGACTGGACTCTTCAAAGCGCCAATCTTTGAATCTTCGAGCTTC
TTTCTCTGATTACCCCCTTGCCAGCAGACTCATGGTTAGAAATTTACCATACTCCACCAATGAGAATCGGCTACAAGAAGAATTTTCAAATTTTGGTGAGATTGCTGAAG
GTAACTGCATTTCTTTTCTCGTTGAGCGATTAAACTATTATATGATGTCAATTTCCAGCCAAGTCCAATATGCCTTATAA
mRNA sequenceShow/hide mRNA sequence
TTTTTTTTTTTTTTTTTTTTTTTTAATTATTTCTTTTTTGAAATTAAAATCAAACAAAGCTCCACGGCGTTTTTCCTTTAAGGTGCGAACCCGGGAACCAACAAAGCTCC
ACGGCGTCGACTGGGCAGATTTCAGCTCCATCATGTGGGCAGCCACCGTCTCCTTCCCTTCACTTTCTAACCTCCGGGGACCCATTCCTCTGAGTAATCGACTGGACTCT
TCAAAGCGCCAATCTTTGAATCTTCGAGCTTCTTTCTCTGATTACCCCCTTGCCAGCAGACTCATGGTTAGAAATTTACCATACTCCACCAATGAGAATCGGCTACAAGA
AGAATTTTCAAATTTTGGTGAGATTGCTGAAGGTAACTGCATTTCTTTTCTCGTTGAGCGATTAAACTATTATATGATGTCAATTTCCAGCCAAGTCCAATATGCCTTAT
AA
Protein sequenceShow/hide protein sequence
MWAATVSFPSLSNLRGPIPLSNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENRLQEEFSNFGEIAEGNCISFLVERLNYYMMSISSQVQYAL