; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh04G001150 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G001150
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPeptide chain release factor 1 like
Genome locationCmo_Chr04:601912..604364
RNA-Seq ExpressionCmoCh04G001150
SyntenyCmoCh04G001150
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600897.1 hypothetical protein SDJN03_06130, partial [Cucurbita argyrosperma subsp. sororia]4.3e-5978.48Show/hide
Query:  MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG
        MAKS P A+ LQQFAK+ V SKKPQS   + K +IRVSP ETPI D+VRVISEP   KKNME KNR+PLADVVSDC KRWFQDTLKEA+AGD AMQVLVG
Subjt:  MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG

Query:  QMFCSGYGVPKDTRKGLAWINRASKYQASVWKASDRHPAYLATDSESSDRRVKRDDIR
        QMFCSGYGVPKDT+KGLAWINRASK QASV + SDRHP YLATDSE S+RRVK+DDIR
Subjt:  QMFCSGYGVPKDTRKGLAWINRASKYQASVWKASDRHPAYLATDSESSDRRVKRDDIR

KAG7030637.1 hypothetical protein SDJN02_04674 [Cucurbita argyrosperma subsp. argyrosperma]3.0e-7698.68Show/hide
Query:  MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG
        MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG
Subjt:  MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG

Query:  QMFCSGYGVPKDTRKGLAWINRASKYQASVWKASDRHPAYLATDSESSDRRV
        QMFCSGYGVPKDTRKGLAWINRASK QASVWKASDRHPAYLATDSESSDRR+
Subjt:  QMFCSGYGVPKDTRKGLAWINRASKYQASVWKASDRHPAYLATDSESSDRRV

XP_022941871.1 uncharacterized protein LOC111447103 [Cucurbita moschata]3.5e-85100Show/hide
Query:  MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG
        MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG
Subjt:  MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG

Query:  QMFCSGYGVPKDTRKGLAWINRASKYQASVWKASDRHPAYLATDSESSDRRVKRDDIRRSFSQLH
        QMFCSGYGVPKDTRKGLAWINRASKYQASVWKASDRHPAYLATDSESSDRRVKRDDIRRSFSQLH
Subjt:  QMFCSGYGVPKDTRKGLAWINRASKYQASVWKASDRHPAYLATDSESSDRRVKRDDIRRSFSQLH

XP_022996650.1 uncharacterized protein LOC111491826 [Cucurbita maxima]2.8e-7496.73Show/hide
Query:  MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG
        MAKS PLASRLQQFAKVVVSSKKPQSPT RQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG
Subjt:  MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG

Query:  QMFCSGYGVPKDTRKGLAWINRASKYQASVWKASDRHPAYLATDSESSDRRVK
        QMFCSGYGVPKDTRKGLAWI+RASKYQASV KASDRHP YLATDSESSDRRVK
Subjt:  QMFCSGYGVPKDTRKGLAWINRASKYQASVWKASDRHPAYLATDSESSDRRVK

XP_023552657.1 uncharacterized protein LOC111810237 [Cucurbita pepo subsp. pepo]1.7e-8499.39Show/hide
Query:  MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG
        MAKS PLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG
Subjt:  MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG

Query:  QMFCSGYGVPKDTRKGLAWINRASKYQASVWKASDRHPAYLATDSESSDRRVKRDDIRRSFSQLH
        QMFCSGYGVPKDTRKGLAWINRASKYQASVWKASDRHPAYLATDSESSDRRVKRDDIRRSFSQLH
Subjt:  QMFCSGYGVPKDTRKGLAWINRASKYQASVWKASDRHPAYLATDSESSDRRVKRDDIRRSFSQLH

TrEMBL top hitse value%identityAlignment
A0A0A0KM25 Uncharacterized protein2.0e-5777.36Show/hide
Query:  MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPK-KNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLV
        MAKS P  +R QQFAK+V SSK PQS    +K +IR SP ETPIS SVRVISEP + K    E KNR PLADVVSDC KRWFQDTLKEA AGDT+MQVLV
Subjt:  MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPK-KNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLV

Query:  GQMFCSGYGVPKDTRKGLAWINRASKYQASVWKASDRHPAYLATDSESSDRRVKRDDIR
        GQMFCSGYGVPK+T+KGLAWI RASKYQASVWKASDRHP YLATDSESSDRRVKRD++R
Subjt:  GQMFCSGYGVPKDTRKGLAWINRASKYQASVWKASDRHPAYLATDSESSDRRVKRDDIR

A0A6J1FNN7 uncharacterized protein LOC1114471031.7e-85100Show/hide
Query:  MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG
        MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG
Subjt:  MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG

Query:  QMFCSGYGVPKDTRKGLAWINRASKYQASVWKASDRHPAYLATDSESSDRRVKRDDIRRSFSQLH
        QMFCSGYGVPKDTRKGLAWINRASKYQASVWKASDRHPAYLATDSESSDRRVKRDDIRRSFSQLH
Subjt:  QMFCSGYGVPKDTRKGLAWINRASKYQASVWKASDRHPAYLATDSESSDRRVKRDDIRRSFSQLH

A0A6J1GZI5 uncharacterized protein LOC1114589318.0e-5977.85Show/hide
Query:  MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG
        MAKS P A+ LQQFAK+ V SKKPQS   + K +IRVSP ETPI D+VRVISEP   KKNME KNR+PLADVVSDC KRWFQDTLKEA+AGD AMQVLVG
Subjt:  MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG

Query:  QMFCSGYGVPKDTRKGLAWINRASKYQASVWKASDRHPAYLATDSESSDRRVKRDDIR
        QMFCSGYGVPKDT+KGLAWINRASK QA V + SDRHP YLATDSE S+RRVK+DDIR
Subjt:  QMFCSGYGVPKDTRKGLAWINRASKYQASVWKASDRHPAYLATDSESSDRRVKRDDIR

A0A6J1JUC7 uncharacterized protein LOC1114884391.0e-5877.85Show/hide
Query:  MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG
        MAKS P AS LQQFAK+ V SKKPQS   + K +IRVSP ETPI D+VRVISEP   KKNME +NR+PLADVVSDC KRWFQDTLKEA+AGD AMQVLVG
Subjt:  MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG

Query:  QMFCSGYGVPKDTRKGLAWINRASKYQASVWKASDRHPAYLATDSESSDRRVKRDDIR
        QMFCSGYGVPKDT+KGLAWINRASK QA V + SDRHP YLATDSE S+RRVK+DDIR
Subjt:  QMFCSGYGVPKDTRKGLAWINRASKYQASVWKASDRHPAYLATDSESSDRRVKRDDIR

A0A6J1K2L5 uncharacterized protein LOC1114918261.4e-7496.73Show/hide
Query:  MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG
        MAKS PLASRLQQFAKVVVSSKKPQSPT RQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG
Subjt:  MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG

Query:  QMFCSGYGVPKDTRKGLAWINRASKYQASVWKASDRHPAYLATDSESSDRRVK
        QMFCSGYGVPKDTRKGLAWI+RASKYQASV KASDRHP YLATDSESSDRRVK
Subjt:  QMFCSGYGVPKDTRKGLAWINRASKYQASVWKASDRHPAYLATDSESSDRRVK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G38450.1 CONTAINS InterPro DOMAIN/s: Sel1-like (InterPro:IPR006597)6.1e-2744Show/hide
Query:  MAKSFPLASRLQQFAKVV---VSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQV
        M KS P+ + L+  +  V   + S KP  P +      + S   T  S++ R                 +PL+ VVSDCAKRWF+DTL+EA AG+  MQV
Subjt:  MAKSFPLASRLQQFAKVV---VSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQV

Query:  LVGQMFCSGYGVPKDTRKGLAWINRASKYQASVWKASDRHPAYLATDSES
        L+GQM+ SGYGVPKD RKG  WI +AS+ ++SVWK  D+ P Y A+DS+S
Subjt:  LVGQMFCSGYGVPKDTRKGLAWINRASKYQASVWKASDRHPAYLATDSES

AT5G05360.1 unknown protein1.1e-3160Show/hide
Query:  SEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVGQMFCSGYGVPKDTRKGLAWINRASKYQASVWKASDRHPAYLATDSESSDRR
        S PA P    +  NR+PLA VV DC +RWFQDTLKEA +GD  MQVLVGQM+CSGYG+PKD  KG AWIN+AS+ ++S W+ SD+ P Y A+DS+S+D++
Subjt:  SEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVGQMFCSGYGVPKDTRKGLAWINRASKYQASVWKASDRHPAYLATDSESSDRR

AT5G05360.2 unknown protein9.4e-2862.07Show/hide
Query:  SEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVGQMFCSGYGVPKDTRKGLAWINRASKYQASVWKASDRHP
        S PA P    +  NR+PLA VV DC +RWFQDTLKEA +GD  MQVLVGQM+CSGYG+PKD  KG AWIN+AS+ ++S W+ SD+ P
Subjt:  SEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVGQMFCSGYGVPKDTRKGLAWINRASKYQASVWKASDRHP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAAATCGTTTCCATTGGCGTCTCGCCTTCAACAATTCGCCAAGGTCGTCGTCTCCTCCAAAAAGCCCCAATCACCCACGGCCAGGCAGAAGCCCAAGATCCGAGT
TTCGCCGCCTGAAACTCCGATCTCCGATTCGGTCCGAGTCATCTCGGAACCGGCGCAGCCGAAGAAGAATATGGAGGTGAAGAATCGAATTCCGTTGGCCGATGTGGTGT
CGGACTGCGCCAAACGGTGGTTCCAGGACACGCTCAAGGAGGCAAACGCCGGCGATACGGCAATGCAGGTCTTGGTAGGGCAAATGTTTTGCTCTGGCTATGGAGTTCCC
AAGGACACTCGGAAGGGGCTTGCTTGGATCAATCGAGCTTCGAAATATCAGGCATCAGTTTGGAAAGCAAGCGATAGACATCCAGCTTACTTAGCCACCGATTCGGAATC
AAGTGATAGGAGGGTCAAACGAGATGACATCAGACGATCCTTTTCACAACTTCACTAA
mRNA sequenceShow/hide mRNA sequence
TGCTTTCCTCTCAAATGAAATGTTTTTGTAAATCCATGAGCAAGCCTGCGATCTGGAGAGGCCAAAAGCGGCGGTTCACAATCCCATCGGCTCAACAATCCTTTGTTTGA
TGGCAAAATCGTTTCCATTGGCGTCTCGCCTTCAACAATTCGCCAAGGTCGTCGTCTCCTCCAAAAAGCCCCAATCACCCACGGCCAGGCAGAAGCCCAAGATCCGAGTT
TCGCCGCCTGAAACTCCGATCTCCGATTCGGTCCGAGTCATCTCGGAACCGGCGCAGCCGAAGAAGAATATGGAGGTGAAGAATCGAATTCCGTTGGCCGATGTGGTGTC
GGACTGCGCCAAACGGTGGTTCCAGGACACGCTCAAGGAGGCAAACGCCGGCGATACGGCAATGCAGGTCTTGGTAGGGCAAATGTTTTGCTCTGGCTATGGAGTTCCCA
AGGACACTCGGAAGGGGCTTGCTTGGATCAATCGAGCTTCGAAATATCAGGCATCAGTTTGGAAAGCAAGCGATAGACATCCAGCTTACTTAGCCACCGATTCGGAATCA
AGTGATAGGAGGGTCAAACGAGATGACATCAGACGATCCTTTTCACAACTTCACTAATCCAATTAGTAATCCCGTTCACTGCCAAGTTCACAATCAAAATGGGGTGTCTT
TTCTCTGTGTGGGCATGTAAAGCTTATGGTTATCCATTGTATTCTACCTTTCCTCATGCTCATGCTGTAGTGGCTGATTAAACTTTAAAAGTGAATGATATGGTCTTACA
AAGTATAACAATAATCTATTTCTTGTCAAATTTTCTGTTACAAATTTACAAGCAATGTTGAAGATGTTGATAAATACTAAAGACAGAAGAAACCTTGTTCGGGTTGGTTT
TGGGTCTCCTTCCTCTTCTTCTTGGTAGAGACTTGAAATAAATTGTGTATACTATTTCCCTTCACGCTTTCCCTTTCTCC
Protein sequenceShow/hide protein sequence
MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVGQMFCSGYGVP
KDTRKGLAWINRASKYQASVWKASDRHPAYLATDSESSDRRVKRDDIRRSFSQLH