; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh04G002120 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G002120
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionExpansin
Genome locationCmo_Chr04:1058051..1059107
RNA-Seq ExpressionCmoCh04G002120
SyntenyCmoCh04G002120
Gene Ontology termsGO:0009664 - plant-type cell wall organization (biological process)
GO:0005576 - extracellular region (cellular component)
GO:0016020 - membrane (cellular component)
InterPro domainsIPR002963 - Expansin
IPR007117 - Expansin, cellulose-binding-like domain
IPR007118 - Expansin/Lol pI
IPR036749 - Expansin, cellulose-binding-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600046.1 Expansin-A4, partial [Cucurbita argyrosperma subsp. sororia]8.0e-5384.13Show/hide
Query:  PQSVRILHNQSESLPLTEMGSFTEVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDR
        P  ++I   ++  +P+    S+  VPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDR
Subjt:  PQSVRILHNQSESLPLTEMGSFTEVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDR

Query:  RTTTSWNIVPSNWQFGQTFTGKNFRV
        RTTTSWNIVPSNWQFGQTFTGKNFRV
Subjt:  RTTTSWNIVPSNWQFGQTFTGKNFRV

KAG7030717.1 Expansin-A4 [Cucurbita argyrosperma subsp. argyrosperma]8.0e-5384.13Show/hide
Query:  PQSVRILHNQSESLPLTEMGSFTEVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDR
        P  ++I   ++  +P+    S+  VPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDR
Subjt:  PQSVRILHNQSESLPLTEMGSFTEVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDR

Query:  RTTTSWNIVPSNWQFGQTFTGKNFRV
        RTTTSWNIVPSNWQFGQTFTGKNFRV
Subjt:  RTTTSWNIVPSNWQFGQTFTGKNFRV

XP_022942549.1 expansin-A4-like [Cucurbita moschata]3.6e-5384.92Show/hide
Query:  PQSVRILHNQSESLPLTEMGSFTEVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDR
        P  ++I   ++  +P+    SF  VPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDR
Subjt:  PQSVRILHNQSESLPLTEMGSFTEVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDR

Query:  RTTTSWNIVPSNWQFGQTFTGKNFRV
        RTTTSWNIVPSNWQFGQTFTGKNFRV
Subjt:  RTTTSWNIVPSNWQFGQTFTGKNFRV

XP_022984155.1 expansin-A4-like [Cucurbita maxima]8.0e-5384.13Show/hide
Query:  PQSVRILHNQSESLPLTEMGSFTEVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDR
        P  ++I   ++  +P+    S+  VPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDR
Subjt:  PQSVRILHNQSESLPLTEMGSFTEVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDR

Query:  RTTTSWNIVPSNWQFGQTFTGKNFRV
        RTTTSWNIVPSNWQFGQTFTGKNFRV
Subjt:  RTTTSWNIVPSNWQFGQTFTGKNFRV

XP_023526378.1 expansin-A4-like [Cucurbita pepo subsp. pepo]1.8e-5283.33Show/hide
Query:  PQSVRILHNQSESLPLTEMGSFTEVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDR
        P  ++I   ++  +P+    S+  VPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMS+SRNWGQNWQSNAVLVGQSLSFRVTSSDR
Subjt:  PQSVRILHNQSESLPLTEMGSFTEVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDR

Query:  RTTTSWNIVPSNWQFGQTFTGKNFRV
        RTTTSWNIVPSNWQFGQTFTGKNFRV
Subjt:  RTTTSWNIVPSNWQFGQTFTGKNFRV

TrEMBL top hitse value%identityAlignment
A0A0A0KS81 Expansin1.9e-5281.75Show/hide
Query:  PQSVRILHNQSESLPLTEMGSFTEVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDR
        P  ++I   ++  +P+    S+  VPCRKQGGIRFTINGFRYFNL+LITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNA+LVGQSLSFRVTSSDR
Subjt:  PQSVRILHNQSESLPLTEMGSFTEVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDR

Query:  RTTTSWNIVPSNWQFGQTFTGKNFRV
        RT+TSWNIVPSNWQFGQTFTGKNFRV
Subjt:  RTTTSWNIVPSNWQFGQTFTGKNFRV

A0A1S3CGK6 Expansin5.6e-5280.95Show/hide
Query:  PQSVRILHNQSESLPLTEMGSFTEVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDR
        P  ++I   ++  +P+    S+  VPCRK+GGIRFTINGFRYFNL+LITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNA+LVGQSLSFRVTSSDR
Subjt:  PQSVRILHNQSESLPLTEMGSFTEVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDR

Query:  RTTTSWNIVPSNWQFGQTFTGKNFRV
        RT+TSWNIVPSNWQFGQTFTGKNFRV
Subjt:  RTTTSWNIVPSNWQFGQTFTGKNFRV

A0A5A7U3A7 Expansin5.6e-5280.95Show/hide
Query:  PQSVRILHNQSESLPLTEMGSFTEVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDR
        P  ++I   ++  +P+    S+  VPCRK+GGIRFTINGFRYFNL+LITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNA+LVGQSLSFRVTSSDR
Subjt:  PQSVRILHNQSESLPLTEMGSFTEVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDR

Query:  RTTTSWNIVPSNWQFGQTFTGKNFRV
        RT+TSWNIVPSNWQFGQTFTGKNFRV
Subjt:  RTTTSWNIVPSNWQFGQTFTGKNFRV

A0A6J1FRM9 Expansin1.7e-5384.92Show/hide
Query:  PQSVRILHNQSESLPLTEMGSFTEVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDR
        P  ++I   ++  +P+    SF  VPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDR
Subjt:  PQSVRILHNQSESLPLTEMGSFTEVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDR

Query:  RTTTSWNIVPSNWQFGQTFTGKNFRV
        RTTTSWNIVPSNWQFGQTFTGKNFRV
Subjt:  RTTTSWNIVPSNWQFGQTFTGKNFRV

A0A6J1J7W8 Expansin3.9e-5384.13Show/hide
Query:  PQSVRILHNQSESLPLTEMGSFTEVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDR
        P  ++I   ++  +P+    S+  VPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDR
Subjt:  PQSVRILHNQSESLPLTEMGSFTEVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDR

Query:  RTTTSWNIVPSNWQFGQTFTGKNFRV
        RTTTSWNIVPSNWQFGQTFTGKNFRV
Subjt:  RTTTSWNIVPSNWQFGQTFTGKNFRV

SwissProt top hitse value%identityAlignment
O48818 Expansin-A43.0e-5086.79Show/hide
Query:  SFTEVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDRRTTTSWNIVPSNWQFGQTFT
        S+  VPCRK+GGIRFTING RYFNLVLITNVAGAGDIV+ASVKGS+T WMS+SRNWGQNWQSNAVLVGQ+LSFRVT SDRRT+TSWN+VPSNWQFGQTF 
Subjt:  SFTEVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDRRTTTSWNIVPSNWQFGQTFT

Query:  GKNFRV
        GKNFRV
Subjt:  GKNFRV

O80932 Expansin-A31.8e-4780.19Show/hide
Query:  SFTEVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDRRTTTSWNIVPSNWQFGQTFT
        S+  VPCRK GGIRFT+NGFRYFNLVL+TNVAGAGDI   SVKGSKT+W+ MSRNWGQNWQSNAVL+GQSLSFRVT+SDRR++TSWN+ P+ WQFGQTF+
Subjt:  SFTEVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDRRTTTSWNIVPSNWQFGQTFT

Query:  GKNFRV
        GKNFRV
Subjt:  GKNFRV

Q38865 Expansin-A62.8e-4871.43Show/hide
Query:  PQSVRILHNQSESLPLTEMGSFTEVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDR
        P  ++I   ++  +P+    SF  VPCRK+GGIRFTINGFRYFNLVL+TNVAGAG+IV+  VKG+ T WM+MSRNWGQNWQSN+VLVGQSLSFRVTSSDR
Subjt:  PQSVRILHNQSESLPLTEMGSFTEVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDR

Query:  RTTTSWNIVPSNWQFGQTFTGKNFRV
        R++TSWNI P+NW+FGQTF GKNFRV
Subjt:  RTTTSWNIVPSNWQFGQTFTGKNFRV

Q852A1 Expansin-A72.3e-4781.13Show/hide
Query:  SFTEVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDRRTTTSWNIVPSNWQFGQTFT
        S+  VPCRK+GG+RFTINGFRYFNLVLITNVAGAGDIV+ASVKG+ T WM MSRNWGQNWQSN+VLVGQ+LSFRVT SDRRT+TSWN  P+ W FGQTF 
Subjt:  SFTEVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDRRTTTSWNIVPSNWQFGQTFT

Query:  GKNFRV
        GKNFRV
Subjt:  GKNFRV

Q9M2S9 Expansin-A165.6e-4985.85Show/hide
Query:  SFTEVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDRRTTTSWNIVPSNWQFGQTFT
        S+  V CRK GGIRFTING RYFNLVLITNVAGAGDI + SVKGSKT WMS++RNWGQNWQSNAVLVGQSLSFRVTSSDRRT+TSWNI PSNWQFGQTF 
Subjt:  SFTEVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDRRTTTSWNIVPSNWQFGQTFT

Query:  GKNFRV
        GKNFRV
Subjt:  GKNFRV

Arabidopsis top hitse value%identityAlignment
AT2G28950.1 expansin A62.0e-4971.43Show/hide
Query:  PQSVRILHNQSESLPLTEMGSFTEVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDR
        P  ++I   ++  +P+    SF  VPCRK+GGIRFTINGFRYFNLVL+TNVAGAG+IV+  VKG+ T WM+MSRNWGQNWQSN+VLVGQSLSFRVTSSDR
Subjt:  PQSVRILHNQSESLPLTEMGSFTEVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDR

Query:  RTTTSWNIVPSNWQFGQTFTGKNFRV
        R++TSWNI P+NW+FGQTF GKNFRV
Subjt:  RTTTSWNIVPSNWQFGQTFTGKNFRV

AT2G37640.1 Barwin-like endoglucanases superfamily protein1.3e-4880.19Show/hide
Query:  SFTEVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDRRTTTSWNIVPSNWQFGQTFT
        S+  VPCRK GGIRFT+NGFRYFNLVL+TNVAGAGDI   SVKGSKT+W+ MSRNWGQNWQSNAVL+GQSLSFRVT+SDRR++TSWN+ P+ WQFGQTF+
Subjt:  SFTEVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDRRTTTSWNIVPSNWQFGQTFT

Query:  GKNFRV
        GKNFRV
Subjt:  GKNFRV

AT2G39700.1 expansin A42.1e-5186.79Show/hide
Query:  SFTEVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDRRTTTSWNIVPSNWQFGQTFT
        S+  VPCRK+GGIRFTING RYFNLVLITNVAGAGDIV+ASVKGS+T WMS+SRNWGQNWQSNAVLVGQ+LSFRVT SDRRT+TSWN+VPSNWQFGQTF 
Subjt:  SFTEVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDRRTTTSWNIVPSNWQFGQTFT

Query:  GKNFRV
        GKNFRV
Subjt:  GKNFRV

AT3G55500.1 expansin A164.0e-5085.85Show/hide
Query:  SFTEVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDRRTTTSWNIVPSNWQFGQTFT
        S+  V CRK GGIRFTING RYFNLVLITNVAGAGDI + SVKGSKT WMS++RNWGQNWQSNAVLVGQSLSFRVTSSDRRT+TSWNI PSNWQFGQTF 
Subjt:  SFTEVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDRRTTTSWNIVPSNWQFGQTFT

Query:  GKNFRV
        GKNFRV
Subjt:  GKNFRV

AT5G02260.1 expansin A99.1e-4776.42Show/hide
Query:  SFTEVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDRRTTTSWNIVPSNWQFGQTFT
        S+  +PCRK+GGIRFTINGF+YFNLVL+TNVAGAGD++K SVKGS T+W+ +SRNWGQNWQSNA+LVGQSLSFRV +SD R++TS NI PSNWQFGQT++
Subjt:  SFTEVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDRRTTTSWNIVPSNWQFGQTFT

Query:  GKNFRV
        GKNFRV
Subjt:  GKNFRV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCCACAATCAGTTCGAATCCTCCACAACCAGTCCGAATCTCTGCCACTGACTGAAATGGGCAGTTTCACGGAGGTGCCATGCCGGAAACAGGGAGGAATTAGGTT
CACAATCAACGGCTTCCGGTACTTCAACTTGGTACTGATCACAAACGTGGCAGGCGCAGGAGACATCGTGAAGGCGAGCGTGAAAGGCAGCAAAACAGAGTGGATGAGCA
TGAGCCGAAACTGGGGTCAAAACTGGCAATCAAACGCCGTTTTGGTAGGTCAGTCACTGTCGTTCAGGGTTACATCCAGTGACCGTCGCACCACCACTTCGTGGAACATC
GTCCCTTCCAATTGGCAGTTTGGCCAGACCTTCACCGGCAAGAATTTCAGGGTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCCACAATCAGTTCGAATCCTCCACAACCAGTCCGAATCTCTGCCACTGACTGAAATGGGCAGTTTCACGGAGGTGCCATGCCGGAAACAGGGAGGAATTAGGTT
CACAATCAACGGCTTCCGGTACTTCAACTTGGTACTGATCACAAACGTGGCAGGCGCAGGAGACATCGTGAAGGCGAGCGTGAAAGGCAGCAAAACAGAGTGGATGAGCA
TGAGCCGAAACTGGGGTCAAAACTGGCAATCAAACGCCGTTTTGGTAGGTCAGTCACTGTCGTTCAGGGTTACATCCAGTGACCGTCGCACCACCACTTCGTGGAACATC
GTCCCTTCCAATTGGCAGTTTGGCCAGACCTTCACCGGCAAGAATTTCAGGGTCTGAAAATTTTGAAACCCTTCCCGCTCTTTTTTTTTTCTTCAACAACTTGCTTAGCT
TTTTGCTTTTTGCTTCAATCAAATATGGGTGGGGGTAAAGGGTTTCCTTAGAGGGAAGAGAAAGTGCGAGAAAAAATGAGAGAAAAGTGAGCGCGGAGTTTAGGGGATTT
TAATGGTAGGGGGAAACTTTTTGACTTGGGAGGTGGGAGTGTGTGAATGCATGTTGTGTATCTCATGGGGGAAGGAGGTGTATTTCTTTTACTTTGTTTGTTGTAATGAG
AAGAATGGCTGAAAGTGGCTGCTTATTACTACAGCCCGCAGCTTTGCTTATTACTATAAATGTCCTTATATATTTAGACAGCTGACATGAAATTATTCCTGTT
Protein sequenceShow/hide protein sequence
MAPQSVRILHNQSESLPLTEMGSFTEVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDRRTTTSWNI
VPSNWQFGQTFTGKNFRV