; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh04G002890 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G002890
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionexosome complex component RRP41 homolog
Genome locationCmo_Chr04:1450313..1453842
RNA-Seq ExpressionCmoCh04G002890
SyntenyCmoCh04G002890
Gene Ontology termsGO:0016075 - rRNA catabolic process (biological process)
GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' (biological process)
GO:0034475 - U4 snRNA 3'-end processing (biological process)
GO:0071028 - nuclear mRNA surveillance (biological process)
GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0000176 - nuclear exosome (RNase complex) (cellular component)
GO:0000177 - cytoplasmic exosome (RNase complex) (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0004527 - exonuclease activity (molecular function)
GO:0009022 - tRNA nucleotidyltransferase activity (molecular function)
InterPro domainsIPR001247 - Exoribonuclease, phosphorolytic domain 1
IPR015847 - Exoribonuclease, phosphorolytic domain 2
IPR020568 - Ribosomal protein S5 domain 2-type fold
IPR027408 - PNPase/RNase PH domain superfamily
IPR036345 - Exoribonuclease, PH domain 2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3964871.1 hypothetical protein CMV_010887 [Castanea mollissima]2.4e-12292.92Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFVSPEGLRLDGRRPMEMRQIRAEIGAV+KADGSA+FEMGNTKV+AAVYGPREVQNR+QQ+++QALVRCEY+MANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDSK
        QTME CILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRD+VTSCS+GYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDSK
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDSK

Query:  LPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCRG
        LP+DIFENVMQLAIEGCKA+ANYIRE+MLE+TK+LEY RG
Subjt:  LPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCRG

XP_022157614.1 exosome complex component RRP41 homolog [Momordica charantia]4.3e-12495.02Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFVSPEGLR DGRRPMEMRQIR EIGAVSKADGSA+FEMGNTKV+AAVYGPREVQNRSQQ+S+QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDSK
        QTMEECILTHLMPRSQIDIF+QVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMD+K
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDSK

Query:  LPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCRGA
        LP+DIFENVMQLAIEGCKAVA+YIREVMLE+TKKLEY RGA
Subjt:  LPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCRGA

XP_022941604.1 exosome complex component RRP41 homolog [Cucurbita moschata]8.9e-130100Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDSK
        QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDSK
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDSK

Query:  LPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCRGA
        LPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCRGA
Subjt:  LPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCRGA

XP_030944786.1 exosome complex component RRP41 homolog [Quercus lobata]2.4e-12292.92Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFVSPEGLRLDGRRPMEMRQIRAEIGAV+KADGSA+FEMGNTKV+AAVYGPREVQNR+QQ+++QALVRCEY+MANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDSK
        QTME CILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRD+VTSCS+GYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDSK
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDSK

Query:  LPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCRG
        LP+DIFENVMQLAIEGCKA+ANYIRE+MLE+TK+LEY RG
Subjt:  LPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCRG

XP_038891797.1 exosome complex component RRP41 homolog [Benincasa hispida]9.6e-12495.4Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKA+GSA+FEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDSK
        QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMD+K
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDSK

Query:  LPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCR
        LP+D+FENVMQLAIEGCKA+A+YIREVML++TK+LEY R
Subjt:  LPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCR

TrEMBL top hitse value%identityAlignment
A0A6J1DWZ5 exosome complex component RRP41 homolog2.1e-12495.02Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFVSPEGLR DGRRPMEMRQIR EIGAVSKADGSA+FEMGNTKV+AAVYGPREVQNRSQQ+S+QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDSK
        QTMEECILTHLMPRSQIDIF+QVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMD+K
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDSK

Query:  LPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCRGA
        LP+DIFENVMQLAIEGCKAVA+YIREVMLE+TKKLEY RGA
Subjt:  LPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCRGA

A0A6J1FNX1 exosome complex component RRP41 homolog4.3e-130100Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDSK
        QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDSK
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDSK

Query:  LPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCRGA
        LPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCRGA
Subjt:  LPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCRGA

A0A6J1JKC7 exosome complex component RRP41 homolog4.3e-130100Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDSK
        QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDSK
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDSK

Query:  LPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCRGA
        LPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCRGA
Subjt:  LPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCRGA

A0A7N2MX64 Uncharacterized protein1.1e-12292.92Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFVSPEGLRLDGRRPMEMRQIRAEIGAV+KADGSA+FEMGNTKV+AAVYGPREVQNR+QQ+++QALVRCEY+MANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDSK
        QTME CILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRD+VTSCS+GYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDSK
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDSK

Query:  LPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCRG
        LP+DIFENVMQLAIEGCKA+ANYIRE+MLE+TK+LEY RG
Subjt:  LPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCRG

A5BIU1 Uncharacterized protein9.7e-12292.92Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFVSPEGLRLDGRRPMEMRQIR EIGAV+KADGSA FEMGNTKV+AAVYGPREV+NRSQQ+S+QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDSK
        QTME CILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRD+VTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVG LPKLDKVTLLQMD+K
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDSK

Query:  LPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCRG
        LP+DIFENVMQLAIEGCKA+ANYIREV+LE+TK+LEY RG
Subjt:  LPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCRG

SwissProt top hitse value%identityAlignment
Q5JIR6 Exosome complex component Rrp412.6e-5548.51Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        ++ +   G R+DGR+  E+R I+ E+G +  ADGSA  E G  KVLAAVYGPRE+  +  Q  ++A++R  Y MA FS  +R +KP  DRRS EIS VIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDSK
          +E  +L H+ PR+ ID+F+++LQAD GTR A I AA+LALADAGIPM+D+V +C+AG ++   +LDLN  ED+ G  DV V  +P  + +TLLQMD  
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDSK

Query:  LPVDIFENVMQLAIEGCKAVANYIREVMLESTKKL
        L  D F   ++LAI+G KAV    RE + E   K+
Subjt:  LPVDIFENVMQLAIEGCKAVANYIREVMLESTKKL

Q7YRA3 Exosome complex component RRP412.0e-6349.79Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQ-NRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI
        +E +S +G R+DGRR  E+R+I+A +G  ++ADGSA  E GNTK LA VYGP E++ +R++ + ++ALV C+Y+ A FSTG+R R+P GDR+S E+ L +
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQ-NRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDS
        RQT E  ILT L PRSQIDI+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP + +  LP   ++ LL+MD+
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDS

Query:  KLPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCRG
        +L  D  E V++ A    + V   +  V+ +  ++     G
Subjt:  KLPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCRG

Q921I9 Exosome complex component RRP411.8e-6450.62Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQ-NRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI
        +E +S +G R+DGRR  E+R+I+A +G  ++ADGSA  E GNTK LA VYGP E++ +RS+ + ++ALV C+Y+ A FSTG+R R+P GDR+S E+ L +
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQ-NRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDS
        RQT E  ILT L PRSQIDI+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP + +  LP   ++ LL+MDS
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDS

Query:  KLPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCRG
        +L  D  E V++ A +  + V   +  V+ +  ++     G
Subjt:  KLPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCRG

Q9NPD3 Exosome complex component RRP416.8e-6449.79Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQ-NRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI
        +E +S +G R+DGRR  E+R+I+A +G  ++ADGSA  E GNTK LA VYGP E++ +R++ + ++ALV C+Y+ A FSTG+R R+P GDR+S E+ L +
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQ-NRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDS
        RQT E  ILT L PRSQIDI+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP + +  LP   ++ LL+MD+
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDS

Query:  KLPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCRG
        +L  D  E V++ A +  + V   +  V+ +  ++     G
Subjt:  KLPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCRG

Q9SP08 Exosome complex component RRP41 homolog3.1e-10178.93Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI
        ME+V+PEGLRLDGRR  EMRQI AE+G VSKADGSA+FEMGNTKV+AAVYGPRE+QN+SQQ  N  A+V CEY+MA FSTGDR R+ K DRRSTE+SLVI
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDS
        RQTME CILT LMP SQIDIF+QVLQADGGTRSACINAATLALADAGIPMRD+  SCSAGYLNSTPLLDLNYVEDSAGG DVTVG LPKLDKV+LLQMD+
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDS

Query:  KLPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCRGA
        KLP++ FE V  LA EGCKA+A  IREV+ E+TK+LEY R A
Subjt:  KLPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCRGA

Arabidopsis top hitse value%identityAlignment
AT3G46210.1 Ribosomal protein S5 domain 2-like superfamily protein8.6e-1429.26Show/hide
Query:  RLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEE-CIL
        R DGR P ++R +      + +  GSA +  G+TKVLAAVYGP+    +++              A F    + +  +  +   E  +++++T++  C+L
Subjt:  RLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEE-CIL

Query:  THLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDI-VTSCSAGYLNSTPLLDLNYVEDSAGG-------PDVTVGFLPK
        T + P +   + +QV+  DG      INAA  AL DAGIPM+ + V  C     N   +LD N +E+           P+ T+  LP+
Subjt:  THLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDI-VTSCSAGYLNSTPLLDLNYVEDSAGG-------PDVTVGFLPK

AT3G46210.2 Ribosomal protein S5 domain 2-like superfamily protein8.6e-1429.26Show/hide
Query:  RLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEE-CIL
        R DGR P ++R +      + +  GSA +  G+TKVLAAVYGP+    +++              A F    + +  +  +   E  +++++T++  C+L
Subjt:  RLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEE-CIL

Query:  THLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDI-VTSCSAGYLNSTPLLDLNYVEDSAGG-------PDVTVGFLPK
        T + P +   + +QV+  DG      INAA  AL DAGIPM+ + V  C     N   +LD N +E+           P+ T+  LP+
Subjt:  THLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDI-VTSCSAGYLNSTPLLDLNYVEDSAGG-------PDVTVGFLPK

AT3G61620.1 3'-5'-exoribonuclease family protein2.2e-10278.93Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI
        ME+V+PEGLRLDGRR  EMRQI AE+G VSKADGSA+FEMGNTKV+AAVYGPRE+QN+SQQ  N  A+V CEY+MA FSTGDR R+ K DRRSTE+SLVI
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDS
        RQTME CILT LMP SQIDIF+QVLQADGGTRSACINAATLALADAGIPMRD+  SCSAGYLNSTPLLDLNYVEDSAGG DVTVG LPKLDKV+LLQMD+
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDS

Query:  KLPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCRGA
        KLP++ FE V  LA EGCKA+A  IREV+ E+TK+LEY R A
Subjt:  KLPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCRGA

AT3G61620.2 3'-5'-exoribonuclease family protein2.2e-10278.93Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI
        ME+V+PEGLRLDGRR  EMRQI AE+G VSKADGSA+FEMGNTKV+AAVYGPRE+QN+SQQ  N  A+V CEY+MA FSTGDR R+ K DRRSTE+SLVI
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDS
        RQTME CILT LMP SQIDIF+QVLQADGGTRSACINAATLALADAGIPMRD+  SCSAGYLNSTPLLDLNYVEDSAGG DVTVG LPKLDKV+LLQMD+
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDS

Query:  KLPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCRGA
        KLP++ FE V  LA EGCKA+A  IREV+ E+TK+LEY R A
Subjt:  KLPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCRGA

AT4G27490.1 3'-5'-exoribonuclease family protein2.5e-2128.38Show/hide
Query:  RLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILT
        R DGR   + R    + GAVS A GSA  E GNTKV+ +V+GPRE   ++   S+   + C  +  NF++    +         E S ++ + +E  I+ 
Subjt:  RLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILT

Query:  HLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDSKLPVDIFENV
           P++ +D+F  VL++ G   S  I+ A+LALADAGI M D++T+ S   +  + ++D    E+        +  +P   ++T L +  +         
Subjt:  HLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDSKLPVDIFENV

Query:  MQLAIEGCKAVANYIREVMLES
        MQL ++    +   +R+ + +S
Subjt:  MQLAIEGCKAVANYIREVMLES


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTTTGTGAGCCCTGAAGGACTTCGCTTGGACGGTCGTCGTCCCATGGAGATGAGGCAAATCCGAGCAGAAATTGGCGCCGTTTCTAAAGCAGATGGTTCTGCTTT
ATTTGAGATGGGTAACACCAAAGTTCTTGCTGCTGTATATGGTCCAAGAGAGGTTCAGAATAGGAGTCAACAAATGAGCAACCAAGCACTGGTGCGTTGCGAGTACACCA
TGGCTAATTTCAGTACTGGAGATCGCATGAGAAAGCCCAAGGGTGACAGGCGATCGACAGAGATATCTTTAGTCATTCGCCAGACAATGGAGGAATGCATTCTAACACAT
TTAATGCCTCGATCTCAGATAGATATTTTTGTCCAAGTTCTTCAAGCAGATGGAGGTACCAGATCAGCATGTATTAACGCTGCAACTTTGGCACTTGCTGATGCTGGAAT
TCCCATGCGAGATATTGTTACTTCCTGCAGTGCTGGATACCTTAATAGCACTCCTCTGCTAGATTTGAATTATGTAGAAGATAGTGCTGGTGGCCCTGATGTCACTGTTG
GCTTTCTACCTAAATTGGATAAAGTTACTCTTCTTCAGATGGATTCTAAATTACCTGTTGATATATTTGAGAATGTCATGCAACTTGCAATCGAGGGCTGCAAAGCCGTA
GCTAATTACATTCGAGAGGTAATGTTAGAGAGTACCAAAAAGCTCGAATATTGCCGTGGAGCATAG
mRNA sequenceShow/hide mRNA sequence
AAATTTATGGGAAAGTATTTTATATAATTTAAGCTCAATTTTTTGGTGCGCCTTTCCTTTTGTTATTCTTGTAGAGTTGGCAAAACCTTCGCCGCCGCGCCACTTTCTGC
GTCTTCCTTCTCTTCAGTCCTAAAACCCTTCCCAACCTTGCCGCCGCCGCCGCCATCCCTTGTTCCTTACCGCCGAAACCTCGCCCATCGACCTGCCTCCTGCTCCTGGA
AAAACCTACGAACTTATTCGAATTGAACCGACTTGCACCGATAATCTAAACTAGCATTCTAAGACTGCAATATCCTTTCGCTCAGCTGTCTAGATGGAGTTTGTGAGCCC
TGAAGGACTTCGCTTGGACGGTCGTCGTCCCATGGAGATGAGGCAAATCCGAGCAGAAATTGGCGCCGTTTCTAAAGCAGATGGTTCTGCTTTATTTGAGATGGGTAACA
CCAAAGTTCTTGCTGCTGTATATGGTCCAAGAGAGGTTCAGAATAGGAGTCAACAAATGAGCAACCAAGCACTGGTGCGTTGCGAGTACACCATGGCTAATTTCAGTACT
GGAGATCGCATGAGAAAGCCCAAGGGTGACAGGCGATCGACAGAGATATCTTTAGTCATTCGCCAGACAATGGAGGAATGCATTCTAACACATTTAATGCCTCGATCTCA
GATAGATATTTTTGTCCAAGTTCTTCAAGCAGATGGAGGTACCAGATCAGCATGTATTAACGCTGCAACTTTGGCACTTGCTGATGCTGGAATTCCCATGCGAGATATTG
TTACTTCCTGCAGTGCTGGATACCTTAATAGCACTCCTCTGCTAGATTTGAATTATGTAGAAGATAGTGCTGGTGGCCCTGATGTCACTGTTGGCTTTCTACCTAAATTG
GATAAAGTTACTCTTCTTCAGATGGATTCTAAATTACCTGTTGATATATTTGAGAATGTCATGCAACTTGCAATCGAGGGCTGCAAAGCCGTAGCTAATTACATTCGAGA
GGTAATGTTAGAGAGTACCAAAAAGCTCGAATATTGCCGTGGAGCATAGCCAAAACGGTTTTCAGGCATTCTTACACAAAGGAAGGAATCTTCAGGTGTGTTCTAACTTC
AGTAATGGACTGGAGAACTTTTCAGAAAAGATGTCATGTTAAGTTGGTGATATGAAGTAGTAACTGGTGCCCTTTTTTTCCCATCTTCCAGTTTGTTGAATTAATGTCTT
GCCCTGATGTACAGAATATGTTTAGCTTGGGTTGGCTAATTTGAATTTGCCCACAAAATTTATATGAAGGGGCCTTCAACAAGAAGTTAAAACAATTGATGCTGTAATGA
TCTTATTATCATAAACTGCATTATTAGAACCGAATCAACATGTGCCGACTTAAGTTTGTTCCTTTTTCTAGTGACTAAACCAAAATAGATTTACA
Protein sequenceShow/hide protein sequence
MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTH
LMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAV
ANYIREVMLESTKKLEYCRGA