CuGenDBv2

Gene ID	CmoCh04G003300
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic
Genome location	Cmo_Chr04:1618340..1619237
RNA-Seq Expression	CmoCh04G003300
Synteny	CmoCh04G003300
Gene Ontology terms	NA
InterPro domains	IPR044705 - COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6600149.1 Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

1.0e-69

98.55

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Query:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSSLLRTYVGGVSLSVVLFNNRAVSGLLRPRCQQVHRVWKYLSEVACCRFLIVGYDEMCIFQ
        MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSSLLRTYVGGVSL VVLFNNRAVSGLLR RCQQVHRVWKYLSEVACCRFLIVGYDEMCIFQ
Subjt:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSSLLRTYVGGVSLSVVLFNNRAVSGLLRPRCQQVHRVWKYLSEVACCRFLIVGYDEMCIFQ

Query:  VGFAAESAAGDGEAEHVEAGKLMQGLLYQGILKSQARE
        VGFAAESAAGDGEAEHVEAGKLMQGLLYQGILKSQARE
Subjt:  VGFAAESAAGDGEAEHVEAGKLMQGLLYQGILKSQARE

KAG7030817.1 Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.1e-67

96.38

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Query:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSSLLRTYVGGVSLSVVLFNNRAVSGLLRPRCQQVHRVWKYLSEVACCRFLIVGYDEMCIFQ
        MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSSLLRTYVGGVSL VVLFNN AVSGLLR RCQQVHRVWK LSEVACCRFLIVGYDEMCIF+
Subjt:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSSLLRTYVGGVSLSVVLFNNRAVSGLLRPRCQQVHRVWKYLSEVACCRFLIVGYDEMCIFQ

Query:  VGFAAESAAGDGEAEHVEAGKLMQGLLYQGILKSQARE
        VGFAAESAAGDGEAEHVEAGKLMQGLLYQGILKSQARE
Subjt:  VGFAAESAAGDGEAEHVEAGKLMQGLLYQGILKSQARE

XP_022956789.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucurbita moschata]

2.9e-32

45.41

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Query:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSSL-------------------------LRTYVGGVSLSVVLFNNRAVSGL----------
        MEAGI FP T I WS +  CTLC VRRSFPRI+RASS +S                           L  YVGG+SL VVLF NRAVSG+          
Subjt:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSSL-------------------------LRTYVGGVSLSVVLFNNRAVSGL----------

Query:  -----------------------LRPR-----------CQQVHR------------VWKYLSEVACCRFLIVGYDEMCIFQVGFAAESAAGDGEAEHVEA
                               +RP+           C+++              VWK LSEV CCR L+V YD MCIFQVGFAAESA GDGEAEHVEA
Subjt:  -----------------------LRPR-----------CQQVHR------------VWKYLSEVACCRFLIVGYDEMCIFQVGFAAESAAGDGEAEHVEA

Query:  GKLMQGLLYQGILKSQAR
         KLMQG LY+GILKSQA+
Subjt:  GKLMQGLLYQGILKSQAR

XP_022984820.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucurbita maxima]

5.8e-33

45.87

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Query:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSSL-------------------------LRTYVGGVSLSVVLFNNRAVSGL----------
        MEAGI FP T I WS +  CTLC VRRSFPRI+RASS +S                           L  YVGG+SL VVLF NRAVSG+          
Subjt:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSSL-------------------------LRTYVGGVSLSVVLFNNRAVSGL----------

Query:  -----------------------LRPR-----------CQQVHR------------VWKYLSEVACCRFLIVGYDEMCIFQVGFAAESAAGDGEAEHVEA
                               +RP+           C+++              VWK LSEV CCR L+V YD MCIFQVGFAAESA GDGEAEHVEA
Subjt:  -----------------------LRPR-----------CQQVHR------------VWKYLSEVACCRFLIVGYDEMCIFQVGFAAESAAGDGEAEHVEA

Query:  GKLMQGLLYQGILKSQAR
         KLMQGLLY+GILKSQA+
Subjt:  GKLMQGLLYQGILKSQAR

XP_023513804.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucurbita pepo subsp. pepo]

5.4e-31

44.04

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Query:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSSL-------------------------LRTYVGGVSLSVVLFNNRAVSGL----------
        MEAGI FP T I WS +  CTLC VRRSFPRI+RASS +S                           L  YVGG+SL VVLF NRAVSG+          
Subjt:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSSL-------------------------LRTYVGGVSLSVVLFNNRAVSGL----------

Query:  -----------------------LRPR-----------CQQVHR------------VWKYLSEVACCRFLIVGYDEMCIFQVGFAAESAAGDGEAEHVEA
                               +RP+           C+++              VWK LSEV CCR L++ YD MCIFQVGFAAESA GDG+ EHVEA
Subjt:  -----------------------LRPR-----------CQQVHR------------VWKYLSEVACCRFLIVGYDEMCIFQVGFAAESAAGDGEAEHVEA

Query:  GKLMQGLLYQGILKSQAR
         KLMQG LY+GILKSQA+
Subjt:  GKLMQGLLYQGILKSQAR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KQF1 Uncharacterized protein

1.2e-28

42.66

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Query:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSS-------------------------LLRTYVGGVSLSVVLFNNRAVSGL----------
        MEAGI FP T IPW+ NF  T  ++R SFP IVRASSS+S                           L  YVGG+SL +VLF NRAVSG+          
Subjt:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSS-------------------------LLRTYVGGVSLSVVLFNNRAVSGL----------

Query:  -----------------------LRPR-----------------------CQQVHRVWKYLSEVACCRFLIVGYDEMCIFQVGFAAESAAGDGEAEHVEA
                               +RP+                         ++  VWK LSEV CCR L+V YD  CIFQVGFAAESA G+GEAEHVEA
Subjt:  -----------------------LRPR-----------------------CQQVHRVWKYLSEVACCRFLIVGYDEMCIFQVGFAAESAAGDGEAEHVEA

Query:  GKLMQGLLYQGILKSQAR
        GKLMQG LY+G+LKSQA+
Subjt:  GKLMQGLLYQGILKSQAR

A0A6J1DBC0 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic isoform X2

1.9e-29

41.67

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Query:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSS-----------------------------------LLRTYVGGVSLSVVLFNNRAVSGL
        MEAGI F    I WSPNF C LC VRRSFPRI+RASSSSSS                                    L  +VGG+SL VVLF NRAVSG+
Subjt:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSS-----------------------------------LLRTYVGGVSLSVVLFNNRAVSGL

Query:  ---------------------------------LRPR-----------CQQVHR------------VWKYLSEVACCRFLIVGYDEMCIFQVGFAAESAA
                                         +RP+           C+++              VW+ LSEV CCR L+V YD MC+FQVGFAAES  
Subjt:  ---------------------------------LRPR-----------CQQVHR------------VWKYLSEVACCRFLIVGYDEMCIFQVGFAAESAA

Query:  GDGEAEHVEAGKLMQGLLYQGILKSQAR
        GDGEAEHV+A +LMQG LYQGI KS+A+
Subjt:  GDGEAEHVEAGKLMQGLLYQGILKSQAR

A0A6J1DCN6 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic isoform X1

1.9e-29

41.67

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Query:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSS-----------------------------------LLRTYVGGVSLSVVLFNNRAVSGL
        MEAGI F    I WSPNF C LC VRRSFPRI+RASSSSSS                                    L  +VGG+SL VVLF NRAVSG+
Subjt:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSS-----------------------------------LLRTYVGGVSLSVVLFNNRAVSGL

Query:  ---------------------------------LRPR-----------CQQVHR------------VWKYLSEVACCRFLIVGYDEMCIFQVGFAAESAA
                                         +RP+           C+++              VW+ LSEV CCR L+V YD MC+FQVGFAAES  
Subjt:  ---------------------------------LRPR-----------CQQVHR------------VWKYLSEVACCRFLIVGYDEMCIFQVGFAAESAA

Query:  GDGEAEHVEAGKLMQGLLYQGILKSQAR
        GDGEAEHV+A +LMQG LYQGI KS+A+
Subjt:  GDGEAEHVEAGKLMQGLLYQGILKSQAR

A0A6J1H029 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic

1.4e-32

45.41

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Query:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSSL-------------------------LRTYVGGVSLSVVLFNNRAVSGL----------
        MEAGI FP T I WS +  CTLC VRRSFPRI+RASS +S                           L  YVGG+SL VVLF NRAVSG+          
Subjt:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSSL-------------------------LRTYVGGVSLSVVLFNNRAVSGL----------

Query:  -----------------------LRPR-----------CQQVHR------------VWKYLSEVACCRFLIVGYDEMCIFQVGFAAESAAGDGEAEHVEA
                               +RP+           C+++              VWK LSEV CCR L+V YD MCIFQVGFAAESA GDGEAEHVEA
Subjt:  -----------------------LRPR-----------CQQVHR------------VWKYLSEVACCRFLIVGYDEMCIFQVGFAAESAAGDGEAEHVEA

Query:  GKLMQGLLYQGILKSQAR
         KLMQG LY+GILKSQA+
Subjt:  GKLMQGLLYQGILKSQAR

A0A6J1J9M5 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic

2.8e-33

45.87

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Query:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSSL-------------------------LRTYVGGVSLSVVLFNNRAVSGL----------
        MEAGI FP T I WS +  CTLC VRRSFPRI+RASS +S                           L  YVGG+SL VVLF NRAVSG+          
Subjt:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSSL-------------------------LRTYVGGVSLSVVLFNNRAVSGL----------

Query:  -----------------------LRPR-----------CQQVHR------------VWKYLSEVACCRFLIVGYDEMCIFQVGFAAESAAGDGEAEHVEA
                               +RP+           C+++              VWK LSEV CCR L+V YD MCIFQVGFAAESA GDGEAEHVEA
Subjt:  -----------------------LRPR-----------CQQVHR------------VWKYLSEVACCRFLIVGYDEMCIFQVGFAAESAAGDGEAEHVEA

Query:  GKLMQGLLYQGILKSQAR
         KLMQGLLY+GILKSQA+
Subjt:  GKLMQGLLYQGILKSQAR

SwissProt top hits

e value

%identity

Alignment

Q6NQK9 Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic

9.4e-10

28.51

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Query:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSS-------------------------LLRT---YVGGVSLSVVLFNNRAVSGL-------
        MEA I+     IPWS N   +   +   FPR +RASSSS+S                         L+R+   YVGG SL  VLF NR VSG+       
Subjt:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSS-------------------------LLRT---YVGGVSLSVVLFNNRAVSGL-------

Query:  --------------------------LRPR-----------CQQVHR------------VWKYLSEVACCRFLIVGYDEMCIFQVGFAAESAAGDGEAEH
                                  +RP+           C+ V               W+ L    CC+ L++ Y+ +C+ Q+G  AES   D +   
Subjt:  --------------------------LRPR-----------CQQVHR------------VWKYLSEVACCRFLIVGYDEMCIFQVGFAAESAAGDGEAEH

Query:  VEAGKLMQGLLYQGILKSQAR
        V+  KLMQG +Y+G++KS+A+
Subjt:  VEAGKLMQGLLYQGILKSQAR

Arabidopsis top hits

e value

%identity

Alignment

AT1G59840.1 cofactor assembly of complex C

6.7e-11

28.51

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Query:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSS-------------------------LLRT---YVGGVSLSVVLFNNRAVSGL-------
        MEA I+     IPWS N   +   +   FPR +RASSSS+S                         L+R+   YVGG SL  VLF NR VSG+       
Subjt:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSS-------------------------LLRT---YVGGVSLSVVLFNNRAVSGL-------

Query:  --------------------------LRPR-----------CQQVHR------------VWKYLSEVACCRFLIVGYDEMCIFQVGFAAESAAGDGEAEH
                                  +RP+           C+ V               W+ L    CC+ L++ Y+ +C+ Q+G  AES   D +   
Subjt:  --------------------------LRPR-----------CQQVHR------------VWKYLSEVACCRFLIVGYDEMCIFQVGFAAESAAGDGEAEH

Query:  VEAGKLMQGLLYQGILKSQAR
        V+  KLMQG +Y+G++KS+A+
Subjt:  VEAGKLMQGLLYQGILKSQAR

AT1G59840.2 cofactor assembly of complex C

6.7e-11

28.51

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Query:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSS-------------------------LLRT---YVGGVSLSVVLFNNRAVSGL-------
        MEA I+     IPWS N   +   +   FPR +RASSSS+S                         L+R+   YVGG SL  VLF NR VSG+       
Subjt:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSS-------------------------LLRT---YVGGVSLSVVLFNNRAVSGL-------

Query:  --------------------------LRPR-----------CQQVHR------------VWKYLSEVACCRFLIVGYDEMCIFQVGFAAESAAGDGEAEH
                                  +RP+           C+ V               W+ L    CC+ L++ Y+ +C+ Q+G  AES   D +   
Subjt:  --------------------------LRPR-----------CQQVHR------------VWKYLSEVACCRFLIVGYDEMCIFQVGFAAESAAGDGEAEH

Query:  VEAGKLMQGLLYQGILKSQAR
        V+  KLMQG +Y+G++KS+A+
Subjt:  VEAGKLMQGLLYQGILKSQAR

Sequences

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CDS sequence

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ATGGAAGCGGGAATTCTCTTCCCCGCCACTCTAATTCCATGGAGTCCCAATTTCAACTGCACTCTCTGCACTGTTCGTCGCTCTTTCCCGCGCATCGTAAGGGCTTCTTC
TTCTTCTTCCTCGCTCTTGCGCACGTACGTCGGTGGAGTTTCTCTCTCAGTCGTTCTCTTTAATAATCGCGCCGTTTCTGGATTGCTCCGTCCCCGATGCCAGCAGGTTC
ATCGGGTATGGAAGTATCTGTCAGAGGTGGCATGCTGCAGGTTTTTGATTGTTGGTTATGATGAGATGTGTATATTTCAAGTTGGTTTTGCTGCTGAATCAGCTGCGGGT
GATGGTGAGGCCGAACATGTGGAAGCTGGTAAATTGATGCAGGGATTGCTCTATCAAGGAATTCTCAAATCTCAAGCTCGTGAGTAG

mRNA sequence

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Protein sequence

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MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSSLLRTYVGGVSLSVVLFNNRAVSGLLRPRCQQVHRVWKYLSEVACCRFLIVGYDEMCIFQVGFAAESAAG
DGEAEHVEAGKLMQGLLYQGILKSQARE

CmoCh04G003300 (gene) of Cucurbita moschata (Rifu) v1 genome