CuGenDBv2

Gene ID	CmoCh04G003990
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	late embryogenesis abundant protein At5g17165-like isoform X1
Genome location	Cmo_Chr04:1964819..1969599
RNA-Seq Expression	CmoCh04G003990
Synteny	CmoCh04G003990
Gene Ontology terms	NA
InterPro domains	IPR039291 - Late embryogenesis abundant protein At5g17165-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6600216.1 Late embryogenesis abundant protein, partial [Cucurbita argyrosperma subsp. sororia]

9.3e-62

98.41

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Query:  MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKFRRAAHTSAYDKNPDEQVRPSIVPDDVIQPQAAEKYWAPHPHTGVFGPEADQPTAAAGSRAADGG
        MAANSRSAGAIAGLGKRITNQIWT DSAISSSALKFRRAAHTSAYDKNPDEQVRPSIVPDDVIQPQAAEKYWAPHPHTGVFGPEADQ TAAAGSRAADGG
Subjt:  MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKFRRAAHTSAYDKNPDEQVRPSIVPDDVIQPQAAEKYWAPHPHTGVFGPEADQPTAAAGSRAADGG

Query:  NHAAAEEEKAWFRPTSLEDSEKPHGF
        NHAAAEEEKAWFRPTSLEDSEKPHGF
Subjt:  NHAAAEEEKAWFRPTSLEDSEKPHGF

XP_022941802.1 late embryogenesis abundant protein At5g17165-like isoform X1 [Cucurbita moschata]

2.9e-63

100

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Query:  MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKFRRAAHTSAYDKNPDEQVRPSIVPDDVIQPQAAEKYWAPHPHTGVFGPEADQPTAAAGSRAADGG
        MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKFRRAAHTSAYDKNPDEQVRPSIVPDDVIQPQAAEKYWAPHPHTGVFGPEADQPTAAAGSRAADGG
Subjt:  MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKFRRAAHTSAYDKNPDEQVRPSIVPDDVIQPQAAEKYWAPHPHTGVFGPEADQPTAAAGSRAADGG

Query:  NHAAAEEEKAWFRPTSLEDSEKPHGF
        NHAAAEEEKAWFRPTSLEDSEKPHGF
Subjt:  NHAAAEEEKAWFRPTSLEDSEKPHGF

XP_022941803.1 late embryogenesis abundant protein At5g17165-like isoform X2 [Cucurbita moschata]

2.7e-61

99.21

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Query:  MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKFRRAAHTSAYDKNPDEQVRPSIVPDDVIQPQAAEKYWAPHPHTGVFGPEADQPTAAAGSRAADGG
        MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKF RAAHTSAYDKNPDEQVRPSIVPDDVIQPQAAEKYWAPHPHTGVFGPEADQPTAAAGSRAADGG
Subjt:  MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKFRRAAHTSAYDKNPDEQVRPSIVPDDVIQPQAAEKYWAPHPHTGVFGPEADQPTAAAGSRAADGG

Query:  NHAAAEEEKAWFRPTSLEDSEKPHGF
        NHAAAEEEKAWFRPTSLEDSEKPHGF
Subjt:  NHAAAEEEKAWFRPTSLEDSEKPHGF

XP_022990289.1 late embryogenesis abundant protein At5g17165-like isoform X1 [Cucurbita maxima]

2.5e-59

95.24

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Query:  MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKFRRAAHTSAYDKNPDEQVRPSIVPDDVIQPQAAEKYWAPHPHTGVFGPEADQPTAAAGSRAADGG
        MAANSRSAGAIAGLGKRITNQI TSDSAISSSALKFRRAAHTSAYDKNPDEQVRPSIVPDDVIQPQAAEKYWAPHPHTGVFGPEA+QPTAA  +RAADGG
Subjt:  MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKFRRAAHTSAYDKNPDEQVRPSIVPDDVIQPQAAEKYWAPHPHTGVFGPEADQPTAAAGSRAADGG

Query:  NHAAAEEEKAWFRPTSLEDSEKPHGF
        NHAA EEEKAWFRPTSLEDSEKPHGF
Subjt:  NHAAAEEEKAWFRPTSLEDSEKPHGF

XP_023512363.1 late embryogenesis abundant protein At5g17165-like [Cucurbita pepo subsp. pepo]

6.7e-60

96.83

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Query:  MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKFRRAAHTSAYDKNPDEQVRPSIVPDDVIQPQAAEKYWAPHPHTGVFGPEADQPTAAAGSRAADGG
        MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKF RAAHTSAYDKNPDEQVRPSIVPDDVIQPQ AEKYWAPHPHTGVFGPE DQPTA AGSRAADGG
Subjt:  MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKFRRAAHTSAYDKNPDEQVRPSIVPDDVIQPQAAEKYWAPHPHTGVFGPEADQPTAAAGSRAADGG

Query:  NHAAAEEEKAWFRPTSLEDSEKPHGF
        NHAAAEEEKAWFRPTSLEDSEKPHGF
Subjt:  NHAAAEEEKAWFRPTSLEDSEKPHGF

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BYE5 uncharacterized protein LOC103494437

1.5e-49

82.44

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Query:  MAANSRSAGAIAGLGKRITNQIWTS-----DSAISSSALKFRRAAHTSAYDKNPDEQVRPSIVPDDVIQPQAAEKYWAPHPHTGVFGPEADQPTA-AAGS
        MAANSRSAGAIAGLGKRIT+QIWTS     +S ISSSA KFRRAAHTS YDKNP+EQVRPSIVPDDVIQPQAA+KYWAPHP TGVFGP +D P A AA +
Subjt:  MAANSRSAGAIAGLGKRITNQIWTS-----DSAISSSALKFRRAAHTSAYDKNPDEQVRPSIVPDDVIQPQAAEKYWAPHPHTGVFGPEADQPTA-AAGS

Query:  RAADGGNHAAAEEEKAWFRPTSLEDSEKPHG
        RAAD GN++AAEEEKAWFRPTSLEDSEKPHG
Subjt:  RAADGGNHAAAEEEKAWFRPTSLEDSEKPHG

A0A6J1FNH5 late embryogenesis abundant protein At5g17165-like isoform X1

1.4e-63

100

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Query:  MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKFRRAAHTSAYDKNPDEQVRPSIVPDDVIQPQAAEKYWAPHPHTGVFGPEADQPTAAAGSRAADGG
        MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKFRRAAHTSAYDKNPDEQVRPSIVPDDVIQPQAAEKYWAPHPHTGVFGPEADQPTAAAGSRAADGG
Subjt:  MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKFRRAAHTSAYDKNPDEQVRPSIVPDDVIQPQAAEKYWAPHPHTGVFGPEADQPTAAAGSRAADGG

Query:  NHAAAEEEKAWFRPTSLEDSEKPHGF
        NHAAAEEEKAWFRPTSLEDSEKPHGF
Subjt:  NHAAAEEEKAWFRPTSLEDSEKPHGF

A0A6J1FT47 late embryogenesis abundant protein At5g17165-like isoform X2

1.3e-61

99.21

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Query:  MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKFRRAAHTSAYDKNPDEQVRPSIVPDDVIQPQAAEKYWAPHPHTGVFGPEADQPTAAAGSRAADGG
        MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKF RAAHTSAYDKNPDEQVRPSIVPDDVIQPQAAEKYWAPHPHTGVFGPEADQPTAAAGSRAADGG
Subjt:  MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKFRRAAHTSAYDKNPDEQVRPSIVPDDVIQPQAAEKYWAPHPHTGVFGPEADQPTAAAGSRAADGG

Query:  NHAAAEEEKAWFRPTSLEDSEKPHGF
        NHAAAEEEKAWFRPTSLEDSEKPHGF
Subjt:  NHAAAEEEKAWFRPTSLEDSEKPHGF

A0A6J1JRN3 late embryogenesis abundant protein At5g17165-like isoform X1

1.2e-59

95.24

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Query:  MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKFRRAAHTSAYDKNPDEQVRPSIVPDDVIQPQAAEKYWAPHPHTGVFGPEADQPTAAAGSRAADGG
        MAANSRSAGAIAGLGKRITNQI TSDSAISSSALKFRRAAHTSAYDKNPDEQVRPSIVPDDVIQPQAAEKYWAPHPHTGVFGPEA+QPTAA  +RAADGG
Subjt:  MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKFRRAAHTSAYDKNPDEQVRPSIVPDDVIQPQAAEKYWAPHPHTGVFGPEADQPTAAAGSRAADGG

Query:  NHAAAEEEKAWFRPTSLEDSEKPHGF
        NHAA EEEKAWFRPTSLEDSEKPHGF
Subjt:  NHAAAEEEKAWFRPTSLEDSEKPHGF

A0A6J1JSV5 late embryogenesis abundant protein At5g17165-like isoform X2

1.1e-57

94.44

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Query:  MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKFRRAAHTSAYDKNPDEQVRPSIVPDDVIQPQAAEKYWAPHPHTGVFGPEADQPTAAAGSRAADGG
        MAANSRSAGAIAGLGKRITNQI TSDSAISSSALKF RAAHTSAYDKNPDEQVRPSIVPDDVIQPQAAEKYWAPHPHTGVFGPEA+QPTAA  +RAADGG
Subjt:  MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKFRRAAHTSAYDKNPDEQVRPSIVPDDVIQPQAAEKYWAPHPHTGVFGPEADQPTAAAGSRAADGG

Query:  NHAAAEEEKAWFRPTSLEDSEKPHGF
        NHAA EEEKAWFRPTSLEDSEKPHGF
Subjt:  NHAAAEEEKAWFRPTSLEDSEKPHGF

SwissProt top hits

e value

%identity

Alignment

F4KFM8 Late embryogenesis abundant protein At5g17165

5.9e-19

46.77

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Query:  MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKFRRAAHTSAYDKNPDEQVRPSIVPDDVIQPQAAEKYWAPHPHTGVFGPEADQPTAAAGSRAADGG
        MAA S++   I  +G+ I N +    S   +  L   R  HTSAYDKN +E+++PS VPD++I+P  ++KYW+PHP TGVFGP +    A    R   GG
Subjt:  MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKFRRAAHTSAYDKNPDEQVRPSIVPDDVIQPQAAEKYWAPHPHTGVFGPEADQPTAAAGSRAADGG

Query:  NHAAAEEEKAWFRPTSLEDSEKPH
           +  EEKAWFRPTSLED +K H
Subjt:  NHAAAEEEKAWFRPTSLEDSEKPH

Arabidopsis top hits

e value

%identity

Alignment

AT3G03150.1 unknown protein

3.2e-20

46.67

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Query:  SRSAGAIAGLGKRITNQIWTSDSAISSSALKFRRAAHTSAYDKNPDEQVRPSIVPDDVIQPQAAEKYWAPHPHTGVFGPEADQPTAAAGSRAADGGNHAA
        S+S   I  L K + N    S  A +S+    RR+ H+SAYDKN ++++  S VPD+VI+P  ++KYW+PHP TGVFGP   + +A A     D     A
Subjt:  SRSAGAIAGLGKRITNQIWTSDSAISSSALKFRRAAHTSAYDKNPDEQVRPSIVPDDVIQPQAAEKYWAPHPHTGVFGPEADQPTAAAGSRAADGGNHAA

Query:  AEEEKAWFRPTSLEDSEKPH
          EE AWFRPTSLEDS+K H
Subjt:  AEEEKAWFRPTSLEDSEKPH

AT5G17165.1 unknown protein

4.2e-20

46.77

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Query:  MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKFRRAAHTSAYDKNPDEQVRPSIVPDDVIQPQAAEKYWAPHPHTGVFGPEADQPTAAAGSRAADGG
        MAA S++   I  +G+ I N +    S   +  L   R  HTSAYDKN +E+++PS VPD++I+P  ++KYW+PHP TGVFGP +    A    R   GG
Subjt:  MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKFRRAAHTSAYDKNPDEQVRPSIVPDDVIQPQAAEKYWAPHPHTGVFGPEADQPTAAAGSRAADGG

Query:  NHAAAEEEKAWFRPTSLEDSEKPH
           +  EEKAWFRPTSLED +K H
Subjt:  NHAAAEEEKAWFRPTSLEDSEKPH

Sequences

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CDS sequence

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ATGGCCGCCAATTCGAGGAGCGCAGGAGCGATCGCCGGCTTGGGAAAACGAATCACAAACCAGATCTGGACCAGCGATTCTGCGATCTCCTCCTCTGCTCTGAAGTTCAG
GAGGGCAGCTCACACCTCAGCGTATGACAAAAACCCCGACGAGCAAGTCCGACCAAGCATAGTCCCTGATGATGTGATTCAGCCTCAAGCTGCTGAAAAGTACTGGGCTC
CTCATCCACATACCGGTGTTTTTGGGCCAGAGGCCGATCAGCCTACTGCAGCGGCGGGAAGCCGTGCTGCAGATGGTGGCAACCACGCTGCTGCGGAGGAGGAAAAGGCG
TGGTTCCGACCAACCAGTCTGGAGGATTCCGAGAAACCCCACGGGTTTTAG

mRNA sequence

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CTGTACTCGAACAAAAAAAGGAAAAAGAAAAAGAAAAAATGAAACGACCGTGAATAAACGTCTGCCACGTGGTCCAATAGAAAACGAAAGGGGAAATTCCGTACGTGAGA
TGAAACTGAAAGTGGGTGTGGACGGACGGAGAAGGCAATTTGCGTTGAGAGCTTTTGTCGGCTTTTGGCGGGTATGATACGACGCCGTACTCAAGAACTATAAAAGAAGG
ATTTGCTGCTCCAGGATTAGAATCAAGAATCAAAAGCAATTAATCGCCGTTTTTCTTCTTCATTCTCTCTCTGTTTAAGCCGGAATTGTATGGCCGCCAATTCGAGGAGC
GCAGGAGCGATCGCCGGCTTGGGAAAACGAATCACAAACCAGATCTGGACCAGCGATTCTGCGATCTCCTCCTCTGCTCTGAAGTTCAGGAGGGCAGCTCACACCTCAGC
GTATGACAAAAACCCCGACGAGCAAGTCCGACCAAGCATAGTCCCTGATGATGTGATTCAGCCTCAAGCTGCTGAAAAGTACTGGGCTCCTCATCCACATACCGGTGTTT
TTGGGCCAGAGGCCGATCAGCCTACTGCAGCGGCGGGAAGCCGTGCTGCAGATGGTGGCAACCACGCTGCTGCGGAGGAGGAAAAGGCGTGGTTCCGACCAACCAGTCTG
GAGGATTCCGAGAAACCCCACGGGTTTTAGGGCCGGCCATAATAAGGCATTGTTGTTCTTCTGGCCATCCGAAAGTAGACAACAAAGTAGCCAACTAAAAAGGTACTAAA
TAAAGGAGATGGTTGTTTGTGTTGCTGTACTAAGGGTTTGGAGTCTTGAGTTACTTGAGGTTGAGGCATTCTGGCTAGGATGCTTCGCCTCAGCTTGTTATATGTTATTC
TACCAAACTTTATTTTGACTATGATGCTTTAGTGCAGGTTTATAACTATTCCTCATCCAACCTAGAATAATACGCAAT

Protein sequence

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MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKFRRAAHTSAYDKNPDEQVRPSIVPDDVIQPQAAEKYWAPHPHTGVFGPEADQPTAAAGSRAADGGNHAAAEEEKA
WFRPTSLEDSEKPHGF

CmoCh04G003990 (gene) of Cucurbita moschata (Rifu) v1 genome