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CmoCh04G004270 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G004270
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionclassical arabinogalactan protein 1-like
Genome locationCmo_Chr04:2122166..2122531
RNA-Seq ExpressionCmoCh04G004270
SyntenyCmoCh04G004270
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044959 - Classical arabinogalactan protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7030900.1 hypothetical protein SDJN02_04937, partial [Cucurbita argyrosperma subsp. argyrosperma]1.0e-4199.15Show/hide
Query:  MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSLSPSPSPSSISSPPADAPAPSGNAAA
        MAIRGFVVMV VAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSLSPSPSPSSISSPPADAPAPSGNAAA
Subjt:  MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSLSPSPSPSSISSPPADAPAPSGNAAA

Query:  SISFSMFGSVATVLYAI
        SISFSMFGSVATVLYAI
Subjt:  SISFSMFGSVATVLYAI

XP_022942993.1 classical arabinogalactan protein 1-like [Cucurbita moschata]8.4e-44100Show/hide
Query:  MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSLSPSPSPSSISSPPADAPAPSGNAAA
        MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSLSPSPSPSSISSPPADAPAPSGNAAA
Subjt:  MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSLSPSPSPSSISSPPADAPAPSGNAAA

Query:  SISFSMFGSVATVLYAIVLMI
        SISFSMFGSVATVLYAIVLMI
Subjt:  SISFSMFGSVATVLYAIVLMI

XP_022992086.1 classical arabinogalactan protein 1-like [Cucurbita maxima]1.3e-3993.39Show/hide
Query:  MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSLSPSPSPSSISSPPADAPAPSGNAAA
        MA RGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSV+SPKSSPAAAPTP SLKSPPSPPAASPSLSPSPSPSSISSPPADAPAPSGN+AA
Subjt:  MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSLSPSPSPSSISSPPADAPAPSGNAAA

Query:  SISFSMFGSVATVLYAIVLMI
        SIS SMFGSVA VL+AIV MI
Subjt:  SISFSMFGSVATVLYAIVLMI

XP_023542663.1 classical arabinogalactan protein 1-like [Cucurbita pepo subsp. pepo]7.4e-4095.12Show/hide
Query:  MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSL--SPSPSPSSISSPPADAPAPSGNA
        MAIRGFVVMV VAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASL+SPPSPPAASPSL  SPSPSPSSISSPPADAPAPSGNA
Subjt:  MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSL--SPSPSPSSISSPPADAPAPSGNA

Query:  AASISFSMFGSVATVLYAIVLMI
        AASIS SMFGSVA VLYAIVLMI
Subjt:  AASISFSMFGSVATVLYAIVLMI

XP_038877310.1 classical arabinogalactan protein 1 [Benincasa hispida]3.4e-2976.38Show/hide
Query:  MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSLSPSP------SPSSISSPPADAPAP
        MAIR FV M+ VA+LI SAIAQSP ASP  SP+KSPSKAPS SPSV+SPKSSPAAAPTP+SLKSPPSPP+ SP+ SPSP      SPS ISSPPADAPAP
Subjt:  MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSLSPSP------SPSSISSPPADAPAP

Query:  SGNAAASISFSMFGSVATVLYAIVLMI
        SGN AASISFS+FGSVA VLY +VL+I
Subjt:  SGNAAASISFSMFGSVATVLYAIVLMI

TrEMBL top hitse value%identityAlignment
A0A0A0KZB8 Uncharacterized protein2.2e-2673.17Show/hide
Query:  MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSLSPSP--SPSSISSPPADAPAPSGNA
        MAI   V ++ V+  I SA AQSP+ASPSLSPTKSPSKAPS +    SPKSSPA APTP+SLKSPPSPP++SPS SPSP  SP+SISSPPADAPAPSGN 
Subjt:  MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSLSPSP--SPSSISSPPADAPAPSGNA

Query:  AASISFSMFGSVATVLYAIVLMI
        AASI+FS+FGSVA  LYA+VLMI
Subjt:  AASISFSMFGSVATVLYAIVLMI

A0A6J1E9Q3 classical arabinogalactan protein 1-like1.7e-2677.24Show/hide
Query:  MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSLSPSP--SPSSISSPPADAPAPSGNA
        MAIR FVVM+ VA+LI SAIAQSP+ASPSLSP KSPSKAPS SPSV+SPKSSP AAPTPAS          SPS SPSP  SPSSISSPPADAPAPSG+ 
Subjt:  MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSLSPSP--SPSSISSPPADAPAPSGNA

Query:  AASISFSMFGSVATVLYAIVLMI
        AASISFS+FGSVA VLYA+VLMI
Subjt:  AASISFSMFGSVATVLYAIVLMI

A0A6J1FW49 classical arabinogalactan protein 1-like4.1e-44100Show/hide
Query:  MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSLSPSPSPSSISSPPADAPAPSGNAAA
        MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSLSPSPSPSSISSPPADAPAPSGNAAA
Subjt:  MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSLSPSPSPSSISSPPADAPAPSGNAAA

Query:  SISFSMFGSVATVLYAIVLMI
        SISFSMFGSVATVLYAIVLMI
Subjt:  SISFSMFGSVATVLYAIVLMI

A0A6J1J6X2 classical arabinogalactan protein 1-like2.2e-2677.24Show/hide
Query:  MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSLSPSP--SPSSISSPPADAPAPSGNA
        MAIR FVVM+ VA+LI SAIAQSP+ASPSLSP KSPSKAP  SPSV+SPKSSP AAPTPAS          SPS SPSP  SPSSISSPPADAPAPSGN 
Subjt:  MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSLSPSP--SPSSISSPPADAPAPSGNA

Query:  AASISFSMFGSVATVLYAIVLMI
        AASISFS+FGSVA VLYA+VLMI
Subjt:  AASISFSMFGSVATVLYAIVLMI

A0A6J1JSK4 classical arabinogalactan protein 1-like6.1e-4093.39Show/hide
Query:  MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSLSPSPSPSSISSPPADAPAPSGNAAA
        MA RGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSV+SPKSSPAAAPTP SLKSPPSPPAASPSLSPSPSPSSISSPPADAPAPSGN+AA
Subjt:  MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSLSPSPSPSSISSPPADAPAPSGNAAA

Query:  SISFSMFGSVATVLYAIVLMI
        SIS SMFGSVA VL+AIV MI
Subjt:  SISFSMFGSVATVLYAIVLMI

SwissProt top hitse value%identityAlignment
Q8LCN5 Classical arabinogalactan protein 14.5e-0850Show/hide
Query:  RGFVVMVTVAMLIVSAIAQSPSASPS------LSPTKSPSK--APSISPSVESPKSSPAAAPTPASLKSPPSPPAA-SPSL-SPSPSPSSISSPPADAPA
        +  V ++  A+LI SA+AQSP+ +PS      +SP  SP K  AP+ +P V SP  SPAAA TP S  SPPSPP A SP+  SP+ SPS+IS  P +AP 
Subjt:  RGFVVMVTVAMLIVSAIAQSPSASPS------LSPTKSPSK--APSISPSVESPKSSPAAAPTPASLKSPPSPPAA-SPSL-SPSPSPSSISSPPADAPA

Query:  PSGNAAASISFSMFGSVATVLYAIVLMI
        P+   A S  F+ FGSVA +L A VL+I
Subjt:  PSGNAAASISFSMFGSVATVLYAIVLMI

Arabidopsis top hitse value%identityAlignment
AT5G64310.1 arabinogalactan protein 13.2e-0950Show/hide
Query:  RGFVVMVTVAMLIVSAIAQSPSASPS------LSPTKSPSK--APSISPSVESPKSSPAAAPTPASLKSPPSPPAA-SPSL-SPSPSPSSISSPPADAPA
        +  V ++  A+LI SA+AQSP+ +PS      +SP  SP K  AP+ +P V SP  SPAAA TP S  SPPSPP A SP+  SP+ SPS+IS  P +AP 
Subjt:  RGFVVMVTVAMLIVSAIAQSPSASPS------LSPTKSPSK--APSISPSVESPKSSPAAAPTPASLKSPPSPPAA-SPSL-SPSPSPSSISSPPADAPA

Query:  PSGNAAASISFSMFGSVATVLYAIVLMI
        P+   A S  F+ FGSVA +L A VL+I
Subjt:  PSGNAAASISFSMFGSVATVLYAIVLMI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGATTAGAGGTTTTGTGGTGATGGTTACGGTGGCGATGTTGATCGTTTCCGCAATCGCGCAATCGCCGTCGGCATCTCCGTCATTGTCTCCGACTAAATCGCCGTC
TAAGGCTCCGTCGATTTCTCCGTCTGTAGAGTCGCCGAAATCCTCTCCTGCTGCAGCGCCTACTCCAGCATCTTTGAAGTCTCCGCCATCTCCTCCTGCTGCTTCTCCGT
CTCTGTCTCCTTCTCCTTCTCCATCGTCGATATCCTCTCCTCCAGCAGACGCTCCTGCTCCGTCTGGTAACGCCGCCGCTTCGATCTCTTTCTCGATGTTCGGATCTGTG
GCCACTGTGCTGTACGCCATCGTTTTGATGATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGATTAGAGGTTTTGTGGTGATGGTTACGGTGGCGATGTTGATCGTTTCCGCAATCGCGCAATCGCCGTCGGCATCTCCGTCATTGTCTCCGACTAAATCGCCGTC
TAAGGCTCCGTCGATTTCTCCGTCTGTAGAGTCGCCGAAATCCTCTCCTGCTGCAGCGCCTACTCCAGCATCTTTGAAGTCTCCGCCATCTCCTCCTGCTGCTTCTCCGT
CTCTGTCTCCTTCTCCTTCTCCATCGTCGATATCCTCTCCTCCAGCAGACGCTCCTGCTCCGTCTGGTAACGCCGCCGCTTCGATCTCTTTCTCGATGTTCGGATCTGTG
GCCACTGTGCTGTACGCCATCGTTTTGATGATCTGA
Protein sequenceShow/hide protein sequence
MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSLSPSPSPSSISSPPADAPAPSGNAAASISFSMFGSV
ATVLYAIVLMI