; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh04G004410 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G004410
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionMADS-box transcription factor 23-like isoform X1
Genome locationCmo_Chr04:2187309..2188117
RNA-Seq ExpressionCmoCh04G004410
SyntenyCmoCh04G004410
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600253.1 MADS-box transcription factor 27, partial [Cucurbita argyrosperma subsp. sororia]1.3e-4482.4Show/hide
Query:  EEISNRNIHLIKPLEYR---CLLLVFTLQEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITNRYSMPAL
        EE+S  ++  ++ LE +    L  V   +EKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITNRYSMPAL
Subjt:  EEISNRNIHLIKPLEYR---CLLLVFTLQEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITNRYSMPAL

Query:  QLRQPQPQNSETSVPGIKLGYVLVI
        QLRQPQPQNSETSVPGIKLGYVLVI
Subjt:  QLRQPQPQNSETSVPGIKLGYVLVI

KAG7030910.1 MADS-box transcription factor 27, partial [Cucurbita argyrosperma subsp. argyrosperma]8.0e-4277.78Show/hide
Query:  CRKGINYEEISNRNIHLIKPLEYR---CLLLVFTLQEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITN
        C + +  EE+S  ++  ++ LE +    L  V   +EKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITN
Subjt:  CRKGINYEEISNRNIHLIKPLEYR---CLLLVFTLQEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITN

Query:  RYSMPALQLRQPQPQNSETSVPGIKL
        RYSMPALQLRQPQPQNSETSVPGIKL
Subjt:  RYSMPALQLRQPQPQNSETSVPGIKL

XP_022941774.1 MADS-box transcription factor 23-like isoform X1 [Cucurbita moschata]2.6e-4578.79Show/hide
Query:  CRKGINYEEISNRNIHLIKPLEYR---CLLLVFTLQEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITN
        C + +  EE+S  ++  ++ LE +    L  V   +EKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITN
Subjt:  CRKGINYEEISNRNIHLIKPLEYR---CLLLVFTLQEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITN

Query:  RYSMPALQLRQPQPQNSETSVPGIKLGYVLVI
        RYSMPALQLRQPQPQNSETSVPGIKLGYVLVI
Subjt:  RYSMPALQLRQPQPQNSETSVPGIKLGYVLVI

XP_022941775.1 MADS-box transcription factor 23-like isoform X2 [Cucurbita moschata]9.4e-4376.92Show/hide
Query:  CRKGINYEEISNRNIHLIKPLEYR---CLLLVFTLQEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITN
        C + +  EE+S  ++  ++ LE +    L  V   +EKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITN
Subjt:  CRKGINYEEISNRNIHLIKPLEYR---CLLLVFTLQEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITN

Query:  RYSMPALQLRQPQPQNSETSVPGIKLGYVL
        RYSMPALQLRQPQPQNSETSVPGIKLG  L
Subjt:  RYSMPALQLRQPQPQNSETSVPGIKLGYVL

XP_022991134.1 MADS-box transcription factor 23-like isoform X1 [Cucurbita maxima]1.1e-4376.52Show/hide
Query:  CRKGINYEEISNRNIHLIKPLEYR---CLLLVFTLQEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITN
        C + +  EE+S  ++  ++ LE +    L  V   +EKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTS SS QQFTITN
Subjt:  CRKGINYEEISNRNIHLIKPLEYR---CLLLVFTLQEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITN

Query:  RYSMPALQLRQPQPQNSETSVPGIKLGYVLVI
        RYSMPALQLRQPQPQNSETSVPGIKLGYVL I
Subjt:  RYSMPALQLRQPQPQNSETSVPGIKLGYVLVI

TrEMBL top hitse value%identityAlignment
A0A1S3BYR5 MADS-box transcription factor 23 isoform X21.4e-3971.21Show/hide
Query:  CRKGINYEEISNRNIHLIKPLEYR---CLLLVFTLQEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITN
        C + +  EE+S  ++  ++ LE +    L  V   +EKIL DEITEL+QKGNHMHQENVELYKKLD+I KENAELQMK YGPME+DKTSSSS QQFTITN
Subjt:  CRKGINYEEISNRNIHLIKPLEYR---CLLLVFTLQEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITN

Query:  RYSMPALQLRQPQPQNSETSVPGIKLGYVLVI
        RYSMP LQLRQPQPQN ETS+PGIKLGYVLVI
Subjt:  RYSMPALQLRQPQPQNSETSVPGIKLGYVLVI

A0A6J1FPE6 MADS-box transcription factor 23-like isoform X11.3e-4578.79Show/hide
Query:  CRKGINYEEISNRNIHLIKPLEYR---CLLLVFTLQEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITN
        C + +  EE+S  ++  ++ LE +    L  V   +EKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITN
Subjt:  CRKGINYEEISNRNIHLIKPLEYR---CLLLVFTLQEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITN

Query:  RYSMPALQLRQPQPQNSETSVPGIKLGYVLVI
        RYSMPALQLRQPQPQNSETSVPGIKLGYVLVI
Subjt:  RYSMPALQLRQPQPQNSETSVPGIKLGYVLVI

A0A6J1FUQ5 MADS-box transcription factor 23-like isoform X24.5e-4376.92Show/hide
Query:  CRKGINYEEISNRNIHLIKPLEYR---CLLLVFTLQEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITN
        C + +  EE+S  ++  ++ LE +    L  V   +EKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITN
Subjt:  CRKGINYEEISNRNIHLIKPLEYR---CLLLVFTLQEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITN

Query:  RYSMPALQLRQPQPQNSETSVPGIKLGYVL
        RYSMPALQLRQPQPQNSETSVPGIKLG  L
Subjt:  RYSMPALQLRQPQPQNSETSVPGIKLGYVL

A0A6J1JL93 MADS-box transcription factor 23-like isoform X26.6e-4275.38Show/hide
Query:  CRKGINYEEISNRNIHLIKPLEYR---CLLLVFTLQEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITN
        C + +  EE+S  ++  ++ LE +    L  V   +EKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTS SS QQFTITN
Subjt:  CRKGINYEEISNRNIHLIKPLEYR---CLLLVFTLQEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITN

Query:  RYSMPALQLRQPQPQNSETSVPGIKLGYVL
        RYSMPALQLRQPQPQNSETSVPGIKLG  L
Subjt:  RYSMPALQLRQPQPQNSETSVPGIKLGYVL

A0A6J1JVH1 MADS-box transcription factor 23-like isoform X15.4e-4476.52Show/hide
Query:  CRKGINYEEISNRNIHLIKPLEYR---CLLLVFTLQEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITN
        C + +  EE+S  ++  ++ LE +    L  V   +EKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTS SS QQFTITN
Subjt:  CRKGINYEEISNRNIHLIKPLEYR---CLLLVFTLQEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITN

Query:  RYSMPALQLRQPQPQNSETSVPGIKLGYVLVI
        RYSMPALQLRQPQPQNSETSVPGIKLGYVL I
Subjt:  RYSMPALQLRQPQPQNSETSVPGIKLGYVLVI

SwissProt top hitse value%identityAlignment
Q38840 Agamous-like MADS-box protein AGL179.5e-0636.47Show/hide
Query:  QEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITNRYSMPALQLRQPQPQNSETS
        +E+IL +EI EL +K N +H EN+EL +K+  IH+EN EL  K YG    +           +   ++   LQL QP+  + +TS
Subjt:  QEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITNRYSMPALQLRQPQPQNSETS

Q6EP49 MADS-box transcription factor 272.9e-1037.72Show/hide
Query:  EEISNRNIHLIKPLEYR---CLLLVFTLQEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVY---GPMEVDKTSSSSTQQFTITNRYSM
        E++S  N+  ++ LE +    L  V T ++ +L DEI EL +KG+ +HQEN+ELYKK+ +I +ENAEL  K+Y   GP EV++  S +   F +  + ++
Subjt:  EEISNRNIHLIKPLEYR---CLLLVFTLQEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVY---GPMEVDKTSSSSTQQFTITNRYSM

Query:  PALQLRQPQPQNSE
        P        PQ+S+
Subjt:  PALQLRQPQPQNSE

Q6Z6W2 MADS-box transcription factor 571.6e-0529.05Show/hide
Query:  IWPECQRSTKSRKQVGNELERCPCRKGINYEEISNRNIHLIKPLEYRCLLLVFTL---QEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQM
        IW   QR   S +Q  + L+     K +  EE+S   +  ++ LE R  + +  +   ++ +L+ EI EL  KG+ +HQEN+EL + L+++ ++  EL  
Subjt:  IWPECQRSTKSRKQVGNELERCPCRKGINYEEISNRNIHLIKPLEYRCLLLVFTL---QEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQM

Query:  KVY-----GPMEVDKTSSSSTQQFTITNRYSMPALQLRQPQPQNSETS
        K+      G  + +++SS+      I N    P+L+L Q Q +  E S
Subjt:  KVY-----GPMEVDKTSSSSTQQFTITNRYSMPALQLRQPQPQNSETS

Q9SI38 MADS-box transcription factor ANR11.3e-0733.85Show/hide
Query:  RKQVGNELERCPCRKGINYEEISNRNIHLIKPLEYRCLLLVFTLQEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSS
        RK VG EL       G+N  ++ N    L+  L+      V   +++++ +EI EL +KG  + +EN EL   +D++ KEN +LQ KV+G     + +SS
Subjt:  RKQVGNELERCPCRKGINYEEISNRNIHLIKPLEYRCLLLVFTLQEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSS

Query:  STQQFTITNRYSMPALQLRQPQPQNSETSV
               T  Y+ P LQL Q QP   E S+
Subjt:  STQQFTITNRYSMPALQLRQPQPQNSETSV

Q9SZJ6 Agamous-like MADS-box protein AGL213.3e-0634.48Show/hide
Query:  QEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITNRYSMPALQLRQPQPQNSETSVP
        +E++L  EI EL QK N +HQEN++L +K+  IH+EN EL  K Y    +  T+  + ++  + +  S   ++L+  QP++S+   P
Subjt:  QEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITNRYSMPALQLRQPQPQNSETSVP

Arabidopsis top hitse value%identityAlignment
AT2G14210.1 AGAMOUS-like 449.5e-0933.85Show/hide
Query:  RKQVGNELERCPCRKGINYEEISNRNIHLIKPLEYRCLLLVFTLQEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSS
        RK VG EL       G+N  ++ N    L+  L+      V   +++++ +EI EL +KG  + +EN EL   +D++ KEN +LQ KV+G     + +SS
Subjt:  RKQVGNELERCPCRKGINYEEISNRNIHLIKPLEYRCLLLVFTLQEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSS

Query:  STQQFTITNRYSMPALQLRQPQPQNSETSV
               T  Y+ P LQL Q QP   E S+
Subjt:  STQQFTITNRYSMPALQLRQPQPQNSETSV

AT2G22630.1 AGAMOUS-like 176.8e-0736.47Show/hide
Query:  QEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITNRYSMPALQLRQPQPQNSETS
        +E+IL +EI EL +K N +H EN+EL +K+  IH+EN EL  K YG    +           +   ++   LQL QP+  + +TS
Subjt:  QEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITNRYSMPALQLRQPQPQNSETS

AT3G57230.1 AGAMOUS-like 162.0e-0632.81Show/hide
Query:  EEISNRNIHLIKPLEYRCLLL---VFTLQEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITNRYSM---
        EE+S  ++  ++ LE +  L    V   ++++L +EI  L ++GN +HQEN++L+KK++++H++N EL  KV    EV+    ++     +TN   M   
Subjt:  EEISNRNIHLIKPLEYRCLLL---VFTLQEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITNRYSM---

Query:  ----PALQLRQPQPQNSETSVPGIKLGY
              LQL QPQ  + ET    I+L Y
Subjt:  ----PALQLRQPQPQNSETSVPGIKLGY

AT3G57230.2 AGAMOUS-like 162.0e-0632.81Show/hide
Query:  EEISNRNIHLIKPLEYRCLLL---VFTLQEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITNRYSM---
        EE+S  ++  ++ LE +  L    V   ++++L +EI  L ++GN +HQEN++L+KK++++H++N EL  KV    EV+    ++     +TN   M   
Subjt:  EEISNRNIHLIKPLEYRCLLL---VFTLQEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITNRYSM---

Query:  ----PALQLRQPQPQNSETSVPGIKLGY
              LQL QPQ  + ET    I+L Y
Subjt:  ----PALQLRQPQPQNSETSVPGIKLGY

AT4G37940.1 AGAMOUS-like 212.3e-0734.48Show/hide
Query:  QEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITNRYSMPALQLRQPQPQNSETSVP
        +E++L  EI EL QK N +HQEN++L +K+  IH+EN EL  K Y    +  T+  + ++  + +  S   ++L+  QP++S+   P
Subjt:  QEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITNRYSMPALQLRQPQPQNSETSVP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAATTGATGGGCGAAGAACTATCTGGCCTGAGTGTCAAAGATCTACAAAATCTAGAAAACAAGTTGGAAATGAGCTTGAAAGGTGTCCGTGTAGAAAAGGTATAAA
CTATGAAGAGATCTCAAATAGAAACATTCACCTGATAAAGCCTCTTGAATACAGATGTTTACTTCTTGTATTTACCTTGCAGGAAAAGATTTTAAGGGATGAAATTACGG
AACTAAGACAGAAGGGGAATCATATGCATCAAGAAAATGTGGAACTATACAAGAAGTTAGATATGATTCACAAGGAAAATGCAGAACTGCAAATGAAGGTTTATGGACCA
ATGGAAGTGGATAAAACGAGCAGTAGCTCAACTCAACAATTCACTATCACCAATAGATACAGTATGCCTGCTCTACAGCTAAGACAGCCACAACCACAAAACAGTGAAAC
ATCAGTACCAGGGATAAAGCTGGGGTATGTTCTAGTAATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGACAATTGATGGGCGAAGAACTATCTGGCCTGAGTGTCAAAGATCTACAAAATCTAGAAAACAAGTTGGAAATGAGCTTGAAAGGTGTCCGTGTAGAAAAGGTATAAA
CTATGAAGAGATCTCAAATAGAAACATTCACCTGATAAAGCCTCTTGAATACAGATGTTTACTTCTTGTATTTACCTTGCAGGAAAAGATTTTAAGGGATGAAATTACGG
AACTAAGACAGAAGGGGAATCATATGCATCAAGAAAATGTGGAACTATACAAGAAGTTAGATATGATTCACAAGGAAAATGCAGAACTGCAAATGAAGGTTTATGGACCA
ATGGAAGTGGATAAAACGAGCAGTAGCTCAACTCAACAATTCACTATCACCAATAGATACAGTATGCCTGCTCTACAGCTAAGACAGCCACAACCACAAAACAGTGAAAC
ATCAGTACCAGGGATAAAGCTGGGGTATGTTCTAGTAATCTAA
Protein sequenceShow/hide protein sequence
MTIDGRRTIWPECQRSTKSRKQVGNELERCPCRKGINYEEISNRNIHLIKPLEYRCLLLVFTLQEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGP
MEVDKTSSSSTQQFTITNRYSMPALQLRQPQPQNSETSVPGIKLGYVLVI