CuGenDBv2

Gene ID	CmoCh04G004610
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Tubulin alpha chain
Genome location	Cmo_Chr04:2293636..2298023
RNA-Seq Expression	CmoCh04G004610
Synteny	CmoCh04G004610
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6600269.1 hypothetical protein SDJN03_05502, partial [Cucurbita argyrosperma subsp. sororia]

3.8e-111

93.13

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Query:  MAALQILKSTVSPLSFSQPSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFRCAAQDAHKESNGEEPPESLFMKELKKRGIAPTSLLEDTNS
        MAALQILKSTVSPLSFSQPSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRR SFRCAAQDAHKESNGEEPPESLFMKELKKRGI PTSLLEDTNS
Subjt:  MAALQILKSTVSPLSFSQPSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFRCAAQDAHKESNGEEPPESLFMKELKKRGIAPTSLLEDTNS

Query:  TEFELGVEATGGSLDLSGTSAVSTEVSKSLSNQMERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITVSLFFALYF-----------FFGSSFV
        TEFELGVEATGG+LDLSGTSAVSTEVSKSLSNQ ERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITVSLFFALYF           FFGSSFV
Subjt:  TEFELGVEATGGSLDLSGTSAVSTEVSKSLSNQMERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITVSLFFALYF-----------FFGSSFV

Query:  HDGTQTPPSPPPYVYPYAPLEDERISQIAPRVN
        HDGTQTPPSPPPYVYPYAPLEDER+SQIAPRVN
Subjt:  HDGTQTPPSPPPYVYPYAPLEDERISQIAPRVN

XP_022149320.1 uncharacterized protein LOC111017763 [Momordica charantia]

3.4e-91

82.43

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Query:  MAALQILKSTVSPLSFSQPSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFRCAAQDAHKESNGEEPPESLFMKELKKRGIAPTSLLEDTNS
        MAALQ+LKS VSPLS SQP+FG +SSRF ++ DS+RR VRFHGRRRSLRYGCVCRRLSFRCAAQDA KESNGEEPPESLFMKELKKRG+ PTSLLED+NS
Subjt:  MAALQILKSTVSPLSFSQPSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFRCAAQDAHKESNGEEPPESLFMKELKKRGIAPTSLLEDTNS

Query:  TEFELGVEATGGSLDLSGTSAVSTEVSKSLSNQMERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITVSLFFALYFFFGSSFVHDGTQTPPSPP
         +F LG E TG   D S  SAVSTEV+KSLSNQ ERSMQLNSEGLEGLIPRAKLLLT+GGTFFLGFWPLIVITVS FFALYFFFG SFVH+G +TP SPP
Subjt:  TEFELGVEATGGSLDLSGTSAVSTEVSKSLSNQMERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITVSLFFALYFFFGSSFVHDGTQTPPSPP

Query:  PYVYPYAPLEDERISQIAPRVN
        PYV PYA LEDERISQ APRVN
Subjt:  PYVYPYAPLEDERISQIAPRVN

XP_022942489.1 uncharacterized protein LOC111447509 isoform X1 [Cucurbita moschata]

8.8e-116

100

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Query:  MAALQILKSTVSPLSFSQPSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFRCAAQDAHKESNGEEPPESLFMKELKKRGIAPTSLLEDTNS
        MAALQILKSTVSPLSFSQPSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFRCAAQDAHKESNGEEPPESLFMKELKKRGIAPTSLLEDTNS
Subjt:  MAALQILKSTVSPLSFSQPSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFRCAAQDAHKESNGEEPPESLFMKELKKRGIAPTSLLEDTNS

Query:  TEFELGVEATGGSLDLSGTSAVSTEVSKSLSNQMERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITVSLFFALYFFFGSSFVHDGTQTPPSPP
        TEFELGVEATGGSLDLSGTSAVSTEVSKSLSNQMERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITVSLFFALYFFFGSSFVHDGTQTPPSPP
Subjt:  TEFELGVEATGGSLDLSGTSAVSTEVSKSLSNQMERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITVSLFFALYFFFGSSFVHDGTQTPPSPP

Query:  PYVYPYAPLEDERISQIAPRVN
        PYVYPYAPLEDERISQIAPRVN
Subjt:  PYVYPYAPLEDERISQIAPRVN

XP_022991980.1 uncharacterized protein LOC111488465 isoform X1 [Cucurbita maxima]

3.4e-107

93.24

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Query:  MAALQILKSTVSPLSFSQPSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFRCAAQDAHKESNGEEPPESLFMKELKKRGIAPTSLLEDTNS
        MAALQILKSTVS LSFSQ SFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFRCAAQD+HKESNGEEPPESLFMKELKKRGI PTSLLEDT S
Subjt:  MAALQILKSTVSPLSFSQPSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFRCAAQDAHKESNGEEPPESLFMKELKKRGIAPTSLLEDTNS

Query:  TEFELGVEATGGSLDLSGTSAVSTEVSKSLSNQMERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITVSLFFALYFFFGSSFVHDGTQTPPSPP
        TEFELG E TG ++D SGTSAVSTEVSKSLSNQ ERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITV+ FFA YFFFGSSFVHDGTQTPPSPP
Subjt:  TEFELGVEATGGSLDLSGTSAVSTEVSKSLSNQMERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITVSLFFALYFFFGSSFVHDGTQTPPSPP

Query:  PYVYPYAPLEDERISQIAPRVN
        PYVYPYAPLEDERISQIAPRVN
Subjt:  PYVYPYAPLEDERISQIAPRVN

XP_023532257.1 uncharacterized protein LOC111794456 isoform X1 [Cucurbita pepo subsp. pepo]

1.5e-107

93.24

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Query:  MAALQILKSTVSPLSFSQPSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFRCAAQDAHKESNGEEPPESLFMKELKKRGIAPTSLLEDTNS
        MAALQILKSTVSPLSFSQPSFGVQSSRFF+ELDSSRR VRFHGRRRSLRYGCVCRRLSFRCAAQDAHKESNGEEPPESLFMKELKKRGI PTSLLEDT S
Subjt:  MAALQILKSTVSPLSFSQPSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFRCAAQDAHKESNGEEPPESLFMKELKKRGIAPTSLLEDTNS

Query:  TEFELGVEATGGSLDLSGTSAVSTEVSKSLSNQMERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITVSLFFALYFFFGSSFVHDGTQTPPSPP
        TEFELG E TG ++D SGTSAVSTEVSKSLSNQ ERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIV+T+SLFFAL FFFGSSFVHDG QTPPSPP
Subjt:  TEFELGVEATGGSLDLSGTSAVSTEVSKSLSNQMERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITVSLFFALYFFFGSSFVHDGTQTPPSPP

Query:  PYVYPYAPLEDERISQIAPRVN
        PYVYPYAPLEDERISQIAPRVN
Subjt:  PYVYPYAPLEDERISQIAPRVN

TrEMBL top hits

e value

%identity

Alignment

A0A6J1D5D9 uncharacterized protein LOC111017763

1.6e-91

82.43

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Query:  MAALQILKSTVSPLSFSQPSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFRCAAQDAHKESNGEEPPESLFMKELKKRGIAPTSLLEDTNS
        MAALQ+LKS VSPLS SQP+FG +SSRF ++ DS+RR VRFHGRRRSLRYGCVCRRLSFRCAAQDA KESNGEEPPESLFMKELKKRG+ PTSLLED+NS
Subjt:  MAALQILKSTVSPLSFSQPSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFRCAAQDAHKESNGEEPPESLFMKELKKRGIAPTSLLEDTNS

Query:  TEFELGVEATGGSLDLSGTSAVSTEVSKSLSNQMERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITVSLFFALYFFFGSSFVHDGTQTPPSPP
         +F LG E TG   D S  SAVSTEV+KSLSNQ ERSMQLNSEGLEGLIPRAKLLLT+GGTFFLGFWPLIVITVS FFALYFFFG SFVH+G +TP SPP
Subjt:  TEFELGVEATGGSLDLSGTSAVSTEVSKSLSNQMERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITVSLFFALYFFFGSSFVHDGTQTPPSPP

Query:  PYVYPYAPLEDERISQIAPRVN
        PYV PYA LEDERISQ APRVN
Subjt:  PYVYPYAPLEDERISQIAPRVN

A0A6J1FRG9 uncharacterized protein LOC111447509 isoform X1

4.3e-116

100

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Query:  MAALQILKSTVSPLSFSQPSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFRCAAQDAHKESNGEEPPESLFMKELKKRGIAPTSLLEDTNS
        MAALQILKSTVSPLSFSQPSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFRCAAQDAHKESNGEEPPESLFMKELKKRGIAPTSLLEDTNS
Subjt:  MAALQILKSTVSPLSFSQPSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFRCAAQDAHKESNGEEPPESLFMKELKKRGIAPTSLLEDTNS

Query:  TEFELGVEATGGSLDLSGTSAVSTEVSKSLSNQMERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITVSLFFALYFFFGSSFVHDGTQTPPSPP
        TEFELGVEATGGSLDLSGTSAVSTEVSKSLSNQMERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITVSLFFALYFFFGSSFVHDGTQTPPSPP
Subjt:  TEFELGVEATGGSLDLSGTSAVSTEVSKSLSNQMERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITVSLFFALYFFFGSSFVHDGTQTPPSPP

Query:  PYVYPYAPLEDERISQIAPRVN
        PYVYPYAPLEDERISQIAPRVN
Subjt:  PYVYPYAPLEDERISQIAPRVN

A0A6J1FWE6 uncharacterized protein LOC111447509 isoform X2

1.4e-90

83.78

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Query:  MAALQILKSTVSPLSFSQPSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFRCAAQDAHKESNGEEPPESLFMKELKKRGIAPTSLLEDTNS
        MAALQILKSTVSPLSFSQPSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFRCAAQDAHKESNGEEPPESLFMKELKKRGIAPTSLLEDTNS
Subjt:  MAALQILKSTVSPLSFSQPSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFRCAAQDAHKESNGEEPPESLFMKELKKRGIAPTSLLEDTNS

Query:  TEFELGVEATGGSLDLSGTSAVSTEVSKSLSNQMERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITVSLFFALYFFFGSSFVHDGTQTPPSPP
        TEFELGVEATGGSLDLSGTSAVSTEVSKSLSNQMERSMQLNSEGLE                                    FFGSSFVHDGTQTPPSPP
Subjt:  TEFELGVEATGGSLDLSGTSAVSTEVSKSLSNQMERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITVSLFFALYFFFGSSFVHDGTQTPPSPP

Query:  PYVYPYAPLEDERISQIAPRVN
        PYVYPYAPLEDERISQIAPRVN
Subjt:  PYVYPYAPLEDERISQIAPRVN

A0A6J1JBV1 uncharacterized protein LOC111483048

6.2e-91

82.43

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Query:  MAALQILKSTVSPLSFSQPSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFRCAAQDAHKESNGEEPPESLFMKELKKRGIAPTSLLEDTNS
        MA LQILKSTVSP S SQP FG QSSRFF+ELDS+RR V  HGRRRSLRYGCV RRLSFRCAAQD+ KESNGEEPPESLFMKELKKRGI PTSLLEDT++
Subjt:  MAALQILKSTVSPLSFSQPSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFRCAAQDAHKESNGEEPPESLFMKELKKRGIAPTSLLEDTNS

Query:  TEFELGVEATGGSLDLSGTSAVSTEVSKSLSNQMERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITVSLFFALYFFFGSSFVHDGTQTPPSPP
        T+F LG E  G + D S  SAVSTEV KSLSNQ ERSMQLNSEGLEGLIPRAKLLLT+GGTFFLGFWPLIV+TVS FFALYFF G SFVHDGT+TP SPP
Subjt:  TEFELGVEATGGSLDLSGTSAVSTEVSKSLSNQMERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITVSLFFALYFFFGSSFVHDGTQTPPSPP

Query:  PYVYPYAPLEDERISQIAPRVN
        PYV PYA LEDERISQ+APRVN
Subjt:  PYVYPYAPLEDERISQIAPRVN

A0A6J1JUF8 uncharacterized protein LOC111488465 isoform X1

1.6e-107

93.24

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Query:  MAALQILKSTVSPLSFSQPSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFRCAAQDAHKESNGEEPPESLFMKELKKRGIAPTSLLEDTNS
        MAALQILKSTVS LSFSQ SFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFRCAAQD+HKESNGEEPPESLFMKELKKRGI PTSLLEDT S
Subjt:  MAALQILKSTVSPLSFSQPSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFRCAAQDAHKESNGEEPPESLFMKELKKRGIAPTSLLEDTNS

Query:  TEFELGVEATGGSLDLSGTSAVSTEVSKSLSNQMERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITVSLFFALYFFFGSSFVHDGTQTPPSPP
        TEFELG E TG ++D SGTSAVSTEVSKSLSNQ ERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITV+ FFA YFFFGSSFVHDGTQTPPSPP
Subjt:  TEFELGVEATGGSLDLSGTSAVSTEVSKSLSNQMERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITVSLFFALYFFFGSSFVHDGTQTPPSPP

Query:  PYVYPYAPLEDERISQIAPRVN
        PYVYPYAPLEDERISQIAPRVN
Subjt:  PYVYPYAPLEDERISQIAPRVN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G50020.1 unknown protein

4.2e-47

51.57

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Query:  AALQILKSTVSPLSFSQPSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFRCAAQDAHKESNGEEPPESLFMKELKKRGIAPTSLLED--TN
        ++L+I+K   SP+SF +    +       +L+  +R  R    R   R      R+S   A      +S GEEPPESLFMKELK+RG+ PTSLL+D   +
Subjt:  AALQILKSTVSPLSFSQPSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFRCAAQDAHKESNGEEPPESLFMKELKKRGIAPTSLLED--TN

Query:  STEFELGVEATGGSLDLSGTSAVSTEVSKSLSNQMERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITVSLFFALYFFFGSSFVHDGTQTPPSP
          E + G E TG S   S T+A +    KSL NQ ERS+ LNSEGLEGLIPRA++LLT+GGTFFLGFWPLIV+T+  F ALY +FG+ F+HDG++TP SP
Subjt:  STEFELGVEATGGSLDLSGTSAVSTEVSKSLSNQMERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITVSLFFALYFFFGSSFVHDGTQTPPSP

Query:  PPYVYPYAPLEDERISQIAPRVN
        PPY+ PYA LEDERIS + PR+N
Subjt:  PPYVYPYAPLEDERISQIAPRVN

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCTGCTCTGCAAATTCTCAAATCAACTGTCTCTCCTCTTTCGTTCTCTCAGCCGAGTTTTGGCGTCCAATCGAGCCGGTTCTTCACGGAGTTGGATTCCTCGAGGAG
GTCTGTACGGTTCCATGGCCGTCGGAGAAGTTTGAGATATGGCTGCGTTTGTAGGAGGTTGAGTTTCCGTTGCGCTGCTCAGGATGCTCATAAGGAAAGCAATGGAGAAG
AACCTCCAGAATCATTATTCATGAAGGAGCTGAAGAAGAGAGGTATAGCTCCCACTTCCTTGCTTGAGGATACTAACAGCACTGAATTTGAACTTGGTGTTGAGGCGACG
GGAGGAAGCCTAGATTTATCCGGTACAAGTGCTGTTTCAACTGAAGTTAGCAAGAGCCTATCCAATCAAATGGAGCGTTCCATGCAATTGAACAGTGAAGGCCTCGAGGG
TTTGATCCCTCGTGCTAAACTTTTGCTAACACTGGGAGGAACATTTTTCTTAGGATTCTGGCCGCTGATCGTCATCACTGTTTCATTATTTTTTGCTTTATACTTTTTTT
TTGGATCATCTTTTGTTCACGACGGCACCCAAACGCCACCATCTCCTCCACCGTATGTTTATCCATATGCTCCTTTAGAAGACGAGAGGATTTCACAAATAGCTCCTCGT
GTAAATTGA

mRNA sequence

Show/hide mRNA sequence

CCCGTTGAATTCCTTGTGAGGAAGAAAGTTCCATCTCTGCTTCTAGTTCTACTTCTAGTTCTACCTATGGCTGCTCTGCAAATTCTCAAATCAACTGTCTCTCCTCTTTC
GTTCTCTCAGCCGAGTTTTGGCGTCCAATCGAGCCGGTTCTTCACGGAGTTGGATTCCTCGAGGAGGTCTGTACGGTTCCATGGCCGTCGGAGAAGTTTGAGATATGGCT
GCGTTTGTAGGAGGTTGAGTTTCCGTTGCGCTGCTCAGGATGCTCATAAGGAAAGCAATGGAGAAGAACCTCCAGAATCATTATTCATGAAGGAGCTGAAGAAGAGAGGT
ATAGCTCCCACTTCCTTGCTTGAGGATACTAACAGCACTGAATTTGAACTTGGTGTTGAGGCGACGGGAGGAAGCCTAGATTTATCCGGTACAAGTGCTGTTTCAACTGA
AGTTAGCAAGAGCCTATCCAATCAAATGGAGCGTTCCATGCAATTGAACAGTGAAGGCCTCGAGGGTTTGATCCCTCGTGCTAAACTTTTGCTAACACTGGGAGGAACAT
TTTTCTTAGGATTCTGGCCGCTGATCGTCATCACTGTTTCATTATTTTTTGCTTTATACTTTTTTTTTGGATCATCTTTTGTTCACGACGGCACCCAAACGCCACCATCT
CCTCCACCGTATGTTTATCCATATGCTCCTTTAGAAGACGAGAGGATTTCACAAATAGCTCCTCGTGTAAATTGACTGGTACCCATTATAATCTTAATTGGTTGGTTTTC
TGCTACTTACTTTTCCCTTTCGCAATATTGATTCCTGTCCTTGCAATATTATGTATATATGAAAATGATTGTTAGCTAGAATTTTCTTGTTTACACTTTCCC

Protein sequence

Show/hide protein sequence

MAALQILKSTVSPLSFSQPSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFRCAAQDAHKESNGEEPPESLFMKELKKRGIAPTSLLEDTNSTEFELGVEAT
GGSLDLSGTSAVSTEVSKSLSNQMERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITVSLFFALYFFFGSSFVHDGTQTPPSPPPYVYPYAPLEDERISQIAPR
VN

CmoCh04G004610 (gene) of Cucurbita moschata (Rifu) v1 genome