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CmoCh04G004860 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G004860
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description40S ribosomal protein S29
Genome locationCmo_Chr04:2432113..2433673
RNA-Seq ExpressionCmoCh04G004860
SyntenyCmoCh04G004860
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001209 - Ribosomal protein S14
IPR039744 - 40S ribosomal protein S29/30S ribosomal protein S14 type Z
IPR043140 - Ribosomal protein S14/S29


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EXB80035.1 40S ribosomal protein S29 [Morus notabilis]8.2e-2367.07Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCL---YNMALSCPLQAFYPLLNDDCSSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGHSNVWNSHPK+YGPGSR C    +       +++ Y L  +    F RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
Subjt:  MGHSNVWNSHPKSYGPGSRTCL---YNMALSCPLQAFYPLLNDDCSSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

KAG6428553.1 hypothetical protein SASPL_112805 [Salvia splendens]3.1e-2262.5Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCLYNMALSCPLQAFYPLLNDDCSSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKASYL-FVPL
        MGHSN+WNSHPK+YGPGSRTC                         RVCGNPHG+IRKYGLMCCRQCFRSNAKEIGFIK  YL + PL
Subjt:  MGHSNVWNSHPKSYGPGSRTCLYNMALSCPLQAFYPLLNDDCSSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKASYL-FVPL

KAG7022492.1 40S ribosomal protein S29 [Cucurbita argyrosperma subsp. argyrosperma]8.2e-2369.62Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCLYNMALSCPLQAFYPLLNDDCSSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGHSNVWNSHPKSYGPGSRTCL  +                     RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
Subjt:  MGHSNVWNSHPKSYGPGSRTCLYNMALSCPLQAFYPLLNDDCSSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

KGN52774.1 hypothetical protein Csa_014474 [Cucumis sativus]2.4e-2267.9Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCLYNMALSCPLQAFYPLLNDDCSSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS
        MGHSNVWNSHPK+YGPGSRTC                         RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS
Subjt:  MGHSNVWNSHPKSYGPGSRTCLYNMALSCPLQAFYPLLNDDCSSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS

KYP47782.1 40S ribosomal protein S29 [Cajanus cajan]2.4e-2253.15Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCLYNMALSCPLQAFYPLLNDDCSSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKASYLFV--PLRSLYQRRWVEF
        MGHSNVWN+HPK+YGPGSR C                         RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK +   V   +  L+   ++  
Subjt:  MGHSNVWNSHPKSYGPGSRTCLYNMALSCPLQAFYPLLNDDCSSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKASYLFV--PLRSLYQRRWVEF

Query:  FFEDFPMFCDV
        FF  FP+FC +
Subjt:  FFEDFPMFCDV

TrEMBL top hitse value%identityAlignment
A0A0A0KV31 Uncharacterized protein1.2e-2267.9Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCLYNMALSCPLQAFYPLLNDDCSSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS
        MGHSNVWNSHPK+YGPGSRTC                         RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS
Subjt:  MGHSNVWNSHPKSYGPGSRTCLYNMALSCPLQAFYPLLNDDCSSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS

A0A0D3HUX4 Uncharacterized protein1.5e-2267.09Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCLYNMALSCPLQAFYPLLNDDCSSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGHSNVWNSHPK+YGPGSR      + S P        +   +  GRVCGNPHGLIRKYGLMCCRQCFRSNAK+IGFIK
Subjt:  MGHSNVWNSHPKSYGPGSRTCLYNMALSCPLQAFYPLLNDDCSSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

A0A0E0MMU2 Uncharacterized protein2.3e-2364.77Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCLYNMAL--SCPLQAFYPLLNDDCSSFG-RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKASYLFV
        MGHSNVWNSHPK+YGPGSR C   +AL     +   +P+     + FG RVCGNPHGLIRKYGLMCCRQCFRSNAK+IGFIK   ++V
Subjt:  MGHSNVWNSHPKSYGPGSRTCLYNMAL--SCPLQAFYPLLNDDCSSFG-RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKASYLFV

A0A151RZ09 40S ribosomal protein S291.2e-2253.15Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCLYNMALSCPLQAFYPLLNDDCSSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKASYLFV--PLRSLYQRRWVEF
        MGHSNVWN+HPK+YGPGSR C                         RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK +   V   +  L+   ++  
Subjt:  MGHSNVWNSHPKSYGPGSRTCLYNMALSCPLQAFYPLLNDDCSSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKASYLFV--PLRSLYQRRWVEF

Query:  FFEDFPMFCDV
        FF  FP+FC +
Subjt:  FFEDFPMFCDV

W9RIN5 40S ribosomal protein S294.0e-2367.07Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCL---YNMALSCPLQAFYPLLNDDCSSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGHSNVWNSHPK+YGPGSR C    +       +++ Y L  +    F RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
Subjt:  MGHSNVWNSHPKSYGPGSRTCL---YNMALSCPLQAFYPLLNDDCSSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

SwissProt top hitse value%identityAlignment
Q4PM47 40S ribosomal protein S295.6e-1448.1Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCLYNMALSCPLQAFYPLLNDDCSSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGH N+W SHP+ YGPGSR C                         RVC N HGLIRKYGL  CR+CFR  A +IGF K
Subjt:  MGHSNVWNSHPKSYGPGSRTCLYNMALSCPLQAFYPLLNDDCSSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

Q5I7K3 40S ribosomal protein S298.0e-2160.76Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCLYNMALSCPLQAFYPLLNDDCSSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGHSNVWNSHPK+YG GSR C                         RVCGN HGLIRKYGLMCCRQCFRS+AK+IGFIK
Subjt:  MGHSNVWNSHPKSYGPGSRTCLYNMALSCPLQAFYPLLNDDCSSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

Q680P8 40S ribosomal protein S291.2e-2163.29Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCLYNMALSCPLQAFYPLLNDDCSSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGHSNVWNSHPK YGPGSR C                         RVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Subjt:  MGHSNVWNSHPKSYGPGSRTCLYNMALSCPLQAFYPLLNDDCSSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

Q6F473 40S ribosomal protein S291.2e-1346.84Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCLYNMALSCPLQAFYPLLNDDCSSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGH+N+W SHP+ YG GSR+C                         R C N HGLIRKYGL  CRQCFR  A +IGF K
Subjt:  MGHSNVWNSHPKSYGPGSRTCLYNMALSCPLQAFYPLLNDDCSSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

Q7XYB0 40S ribosomal protein S298.6e-1546.84Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCLYNMALSCPLQAFYPLLNDDCSSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGH N+W SHP+ YG GSR+C                         ++CGN HGLIRKY +  CRQCFR  AK+IGFIK
Subjt:  MGHSNVWNSHPKSYGPGSRTCLYNMALSCPLQAFYPLLNDDCSSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

Arabidopsis top hitse value%identityAlignment
AT3G43980.1 Ribosomal protein S14p/S29e family protein8.8e-2363.29Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCLYNMALSCPLQAFYPLLNDDCSSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGHSNVWNSHPK YGPGSR C                         RVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Subjt:  MGHSNVWNSHPKSYGPGSRTCLYNMALSCPLQAFYPLLNDDCSSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

AT3G44010.1 Ribosomal protein S14p/S29e family protein8.8e-2363.29Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCLYNMALSCPLQAFYPLLNDDCSSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGHSNVWNSHPK YGPGSR C                         RVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Subjt:  MGHSNVWNSHPKSYGPGSRTCLYNMALSCPLQAFYPLLNDDCSSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

AT4G33865.1 Ribosomal protein S14p/S29e family protein8.8e-2363.29Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCLYNMALSCPLQAFYPLLNDDCSSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGHSNVWNSHPK YGPGSR C                         RVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Subjt:  MGHSNVWNSHPKSYGPGSRTCLYNMALSCPLQAFYPLLNDDCSSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGCACTCCAACGTGTGGAACTCTCATCCTAAGAGCTATGGGCCTGGTTCTCGCACCTGTTTATATAACATGGCTTTAAGCTGTCCTCTTCAAGCATTTTATCCGTT
ACTGAACGATGATTGTTCTTCGTTTGGTCGTGTGTGCGGAAATCCTCATGGTTTGATCAGGAAGTATGGACTTATGTGTTGCAGACAATGCTTCCGTAGCAATGCCAAGG
AAATTGGCTTCATTAAGGCAAGTTATCTCTTTGTACCGCTAAGAAGCTTATATCAGAGACGATGGGTTGAATTCTTTTTTGAAGATTTCCCCATGTTTTGCGATGTTTTT
GCTCTTATTTACTTGTCTTTAAGCGTATTCATTACGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGCACTCCAACGTGTGGAACTCTCATCCTAAGAGCTATGGGCCTGGTTCTCGCACCTGTTTATATAACATGGCTTTAAGCTGTCCTCTTCAAGCATTTTATCCGTT
ACTGAACGATGATTGTTCTTCGTTTGGTCGTGTGTGCGGAAATCCTCATGGTTTGATCAGGAAGTATGGACTTATGTGTTGCAGACAATGCTTCCGTAGCAATGCCAAGG
AAATTGGCTTCATTAAGGCAAGTTATCTCTTTGTACCGCTAAGAAGCTTATATCAGAGACGATGGGTTGAATTCTTTTTTGAAGATTTCCCCATGTTTTGCGATGTTTTT
GCTCTTATTTACTTGTCTTTAAGCGTATTCATTACGTGA
Protein sequenceShow/hide protein sequence
MGHSNVWNSHPKSYGPGSRTCLYNMALSCPLQAFYPLLNDDCSSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKASYLFVPLRSLYQRRWVEFFFEDFPMFCDVF
ALIYLSLSVFIT