CuGenDBv2

Gene ID	CmoCh04G004930
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	zinc finger SWIM domain-containing protein 7
Genome location	Cmo_Chr04:2454995..2457348
RNA-Seq Expression	CmoCh04G004930
Synteny	CmoCh04G004930
Gene Ontology terms	GO:0000724 - double-strand break repair via homologous recombination (biological process) GO:0097196 - Shu complex (cellular component) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR007527 - Zinc finger, SWIM-type

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6600296.1 Zinc finger SWIM domain-containing protein 7, partial [Cucurbita argyrosperma subsp. sororia]

1.7e-66

99.24

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Query:  MSASTLAAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        MSASTLAAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISG+PSGRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASTLAAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASLGACIEVKVSDEELAILLSNL
        KHQLAARLAASLGACIEVKVSDEELAILLSNL
Subjt:  KHQLAARLAASLGACIEVKVSDEELAILLSNL

KAG7030956.1 Zinc finger SWIM domain-containing protein 7 [Cucurbita argyrosperma subsp. argyrosperma]

1.0e-66

99.24

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Query:  MSASTLAAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        MSASTLAAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRS+FQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASTLAAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASLGACIEVKVSDEELAILLSNL
        KHQLAARLAASLGACIEVKVSDEELAILLSNL
Subjt:  KHQLAARLAASLGACIEVKVSDEELAILLSNL

XP_022942858.1 zinc finger SWIM domain-containing protein 7 isoform X2 [Cucurbita moschata]

7.7e-67

100

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Query:  MSASTLAAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        MSASTLAAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASTLAAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASLGACIEVKVSDEELAILLSNL
        KHQLAARLAASLGACIEVKVSDEELAILLSNL
Subjt:  KHQLAARLAASLGACIEVKVSDEELAILLSNL

XP_022983272.1 zinc finger SWIM domain-containing protein 7 isoform X2 [Cucurbita maxima]

8.5e-66

97.73

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Query:  MSASTLAAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        MSASTL AEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEY CFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASTLAAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASLGACIEVKVSDEELAILLSNL
        KHQLAARLAASLGAC+EVKVSDEELAILLSNL
Subjt:  KHQLAARLAASLGACIEVKVSDEELAILLSNL

XP_023526305.1 zinc finger SWIM domain-containing protein 7 isoform X2 [Cucurbita pepo subsp. pepo]

3.8e-66

98.48

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Query:  MSASTLAAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        MSASTLAAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVK+ISG+PSGRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASTLAAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASLGACIEVKVSDEELAILLSNL
        KHQLAARLAASLGACIEVKVSDEELAILLSNL
Subjt:  KHQLAARLAASLGACIEVKVSDEELAILLSNL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KWG5 SWIM-type domain-containing protein

1.6e-62

93.94

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Query:  MSASTLAAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        MSAS + AEAVWKQIESTR VTDDQLSILHFLFGKNFERATRIVDQ GVKKISG PS RSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASTLAAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASLGACIEVKVSDEELAILLSNL
        KHQLAARLAAS+GACIEVKVSDEELAILLSNL
Subjt:  KHQLAARLAASLGACIEVKVSDEELAILLSNL

A0A1S3BZP2 zinc finger SWIM domain-containing protein 7

1.4e-61

92.42

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Query:  MSASTLAAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        MSAS + AEAVWK+IESTR VTDDQLSILHFLFGKNFERATRIVDQ GVKKISG PS RSIFQVVGESRRKEEY CFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASTLAAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASLGACIEVKVSDEELAILLSNL
        KHQLAARLAAS+GACIEVKVSDEELAILLSNL
Subjt:  KHQLAARLAASLGACIEVKVSDEELAILLSNL

A0A6J1D5Z4 zinc finger SWIM domain-containing protein 7

5.2e-61

90.91

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Query:  MSASTLAAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        MSAS + AEAVWKQI+STRSVTDDQLS+LHFLFGKNFERATRIVDQ GVKKI GEPSGRSIFQVVGESRRKEEY CFPENFCACYSFFYD VNRGEQLCC
Subjt:  MSASTLAAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASLGACIEVKVSDEELAILLSNL
        KHQLAARLAASLGA IE KVSDEELA+LLSNL
Subjt:  KHQLAARLAASLGACIEVKVSDEELAILLSNL

A0A6J1FSJ7 zinc finger SWIM domain-containing protein 7 isoform X2

3.7e-67

100

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Query:  MSASTLAAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        MSASTLAAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASTLAAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASLGACIEVKVSDEELAILLSNL
        KHQLAARLAASLGACIEVKVSDEELAILLSNL
Subjt:  KHQLAARLAASLGACIEVKVSDEELAILLSNL

A0A6J1J6W2 zinc finger SWIM domain-containing protein 7 isoform X2

4.1e-66

97.73

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Query:  MSASTLAAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        MSASTL AEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEY CFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASTLAAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASLGACIEVKVSDEELAILLSNL
        KHQLAARLAASLGAC+EVKVSDEELAILLSNL
Subjt:  KHQLAARLAASLGACIEVKVSDEELAILLSNL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G33925.1 unknown protein

2.0e-49

68.18

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Query:  MSASTLAAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        M+ + L A+AVW  IEST SVT++QLSIL  LFGKN E+ATRI+D+ GVKKISG PSGRSIFQVVGES+++EEYLCFP ++C CYSFFYD+V+RGE  CC
Subjt:  MSASTLAAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASLGACIEVKVSDEELAILLSNL
        KHQLAARLA+SLG   E++VSD+ LA++LS +
Subjt:  KHQLAARLAASLGACIEVKVSDEELAILLSNL

AT4G33925.2 unknown protein

4.0e-45

69.75

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Query:  MSASTLAAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        M+ + L A+AVW  IEST SVT++QLSIL  LFGKN E+ATRI+D+ GVKKISG PSGRSIFQVVGES+++EEYLCFP ++C CYSFFYD+V+RGE  CC
Subjt:  MSASTLAAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASLGACIEVK
        KHQLAARLA+SLG   E++
Subjt:  KHQLAARLAASLGACIEVK

Sequences

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CDS sequence

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ATGAGTGCGAGTACCCTCGCCGCCGAAGCAGTGTGGAAGCAGATCGAGTCGACTCGATCAGTGACTGATGATCAGCTTTCAATATTGCATTTCTTGTTTGGCAAGAACTT
CGAGCGAGCTACTCGGATTGTGGATCAAAGTGGAGTGAAGAAAATTTCTGGCGAGCCAAGCGGACGGTCCATCTTTCAGGTTGTGGGAGAATCTCGAAGGAAAGAGGAGT
ATCTCTGTTTCCCAGAAAACTTTTGTGCCTGTTATTCCTTCTTCTATGACATTGTGAACAGAGGAGAACAGCTTTGCTGCAAGCATCAGTTAGCTGCAAGGCTTGCTGCT
TCACTAGGGGCTTGCATTGAAGTTAAAGTATCTGATGAAGAGCTGGCGATATTATTGTCCAATCTTTAG

mRNA sequence

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AACAAAATTTAAAATCACACCCAGAAAAATTTGCTAATTTTTTACGAGGAATTTCCTCCAAAATGAGTGCGAGTACCCTCGCCGCCGAAGCAGTGTGGAAGCAGATCGAG
TCGACTCGATCAGTGACTGATGATCAGCTTTCAATATTGCATTTCTTGTTTGGCAAGAACTTCGAGCGAGCTACTCGGATTGTGGATCAAAGTGGAGTGAAGAAAATTTC
TGGCGAGCCAAGCGGACGGTCCATCTTTCAGGTTGTGGGAGAATCTCGAAGGAAAGAGGAGTATCTCTGTTTCCCAGAAAACTTTTGTGCCTGTTATTCCTTCTTCTATG
ACATTGTGAACAGAGGAGAACAGCTTTGCTGCAAGCATCAGTTAGCTGCAAGGCTTGCTGCTTCACTAGGGGCTTGCATTGAAGTTAAAGTATCTGATGAAGAGCTGGCG
ATATTATTGTCCAATCTTTAGTGACTTTATCAAAGCCAAAGCTCTCAGTACTCAAAGTTTGAGAGGTAATCGAACACATTGTTGTATTTTACCAACTTTTTCCGTCTGTA
CTTGAGCAGCTTTTGTATCCCGTTGAGCACATAATGAAACTTGCATAATTATAACCATCACAACGTCCTAGGTTTCATTGGTGAGCTGGTAATTCTCACTTGTTTGTCAC
GCATTGTGAGATCCTACATCAGTTGGAGAGGCGAACAAAACATTCTTTATAAAAGTGTGGAAACCTCTCTCTAATAGACATGTTTTAAAATATGAGGGGAAGCCCGGAAG
GGAGAGTCCAAAGAGGACAATATTTGCTAGTGGTGGG

Protein sequence

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MSASTLAAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAA
SLGACIEVKVSDEELAILLSNL

CmoCh04G004930 (gene) of Cucurbita moschata (Rifu) v1 genome