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CmoCh04G005000 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G005000
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionLYR motif-containing protein At3g19508
Genome locationCmo_Chr04:2505932..2506601
RNA-Seq ExpressionCmoCh04G005000
SyntenyCmoCh04G005000
Gene Ontology termsNA
InterPro domainsIPR008011 - Complex 1 LYR protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004140718.1 LYR motif-containing protein At3g19508 [Cucumis sativus]2.1e-3390Show/hide
Query:  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSVWVLNKYSVNGSAADKLKEIC
        MEKALR+Y EVLRLVR+LPKD+RPYYAKY RENFVNYREVDA DAKSLEELFHRAYNHS+WVLNKYSV+GSAADKLKEIC
Subjt:  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSVWVLNKYSVNGSAADKLKEIC
XP_008456173.1 PREDICTED: LYR motif-containing protein At3g19508 [Cucumis melo]3.7e-3592.68Show/hide
Query:  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSVWVLNKYSVNGSAADKLKEICNS
        MEKALR+Y EVLRLVRRLPKD+RPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHS+WVLNKYSV+GSAADKLKEIC S
Subjt:  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSVWVLNKYSVNGSAADKLKEICNS
XP_022941949.1 LYR motif-containing protein At3g19508 [Cucurbita moschata]2.8e-38100Show/hide
Query:  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSVWVLNKYSVNGSAADKLKEICNSS
        MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSVWVLNKYSVNGSAADKLKEICNSS
Subjt:  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSVWVLNKYSVNGSAADKLKEICNSS
XP_022983545.1 LYR motif-containing protein At3g19508 [Cucurbita maxima]1.8e-3798.8Show/hide
Query:  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSVWVLNKYSVNGSAADKLKEICNSS
        MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELF+RAYNHSVWVLNKYSVNGSAADKLKEICNSS
Subjt:  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSVWVLNKYSVNGSAADKLKEICNSS
XP_038898400.1 LYR motif-containing protein At3g19508 [Benincasa hispida]6.4e-3593.9Show/hide
Query:  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSVWVLNKYSVNGSAADKLKEICNS
        MEKALRIY EVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAY HS+WVLNKYSV+GSAADKLKEIC S
Subjt:  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSVWVLNKYSVNGSAADKLKEICNS
TrEMBL top hitse value%identityAlignment
A0A0A0L970 Uncharacterized protein9.9e-3490Show/hide
Query:  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSVWVLNKYSVNGSAADKLKEIC
        MEKALR+Y EVLRLVR+LPKD+RPYYAKY RENFVNYREVDA DAKSLEELFHRAYNHS+WVLNKYSV+GSAADKLKEIC
Subjt:  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSVWVLNKYSVNGSAADKLKEIC
A0A1S3C3W4 LYR motif-containing protein At3g195081.8e-3592.68Show/hide
Query:  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSVWVLNKYSVNGSAADKLKEICNS
        MEKALR+Y EVLRLVRRLPKD+RPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHS+WVLNKYSV+GSAADKLKEIC S
Subjt:  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSVWVLNKYSVNGSAADKLKEICNS
A0A5A7T6G8 LYR motif-containing protein1.8e-3592.68Show/hide
Query:  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSVWVLNKYSVNGSAADKLKEICNS
        MEKALR+Y EVLRLVRRLPKD+RPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHS+WVLNKYSV+GSAADKLKEIC S
Subjt:  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSVWVLNKYSVNGSAADKLKEICNS
A0A6J1FPX9 LYR motif-containing protein At3g195081.3e-38100Show/hide
Query:  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSVWVLNKYSVNGSAADKLKEICNSS
        MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSVWVLNKYSVNGSAADKLKEICNSS
Subjt:  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSVWVLNKYSVNGSAADKLKEICNSS
A0A6J1J656 LYR motif-containing protein At3g195088.7e-3898.8Show/hide
Query:  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSVWVLNKYSVNGSAADKLKEICNSS
        MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELF+RAYNHSVWVLNKYSVNGSAADKLKEICNSS
Subjt:  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSVWVLNKYSVNGSAADKLKEICNSS
SwissProt top hitse value%identityAlignment
A9SNJ1 LYR motif-containing protein PHYPADRAFT_1868638.7e-1156.9Show/hide
Query:  YAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSVWVLNK
        Y EVL+LV+RLP  SR YYA+YARENFV Y EV+  D +S+  L  R ++H+ WVL K
Subjt:  YAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSVWVLNK
Q1G3M2 LYR motif-containing protein At3g195086.6e-2773.75Show/hide
Query:  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSVWVLNKYSVNGSAADKLKEIC
        M+K LR+Y  V+RLVR LP DSRPYYAKYARENFVNYREVD ++  SL+ELF RAYNHS+WVL KYS++ SAA KLKEIC
Subjt:  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSVWVLNKYSVNGSAADKLKEIC
Arabidopsis top hitse value%identityAlignment
AT3G19508.1 unknown protein4.7e-2873.75Show/hide
Query:  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSVWVLNKYSVNGSAADKLKEIC
        M+K LR+Y  V+RLVR LP DSRPYYAKYARENFVNYREVD ++  SL+ELF RAYNHS+WVL KYS++ SAA KLKEIC
Subjt:  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSVWVLNKYSVNGSAADKLKEIC

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAGGCCCTGCGAATATACGCCGAGGTTCTGAGGCTGGTGAGGCGGTTGCCGAAGGATTCGAGGCCTTACTACGCTAAATACGCTCGAGAGAATTTCGTCAACTA
CAGAGAAGTCGATGCGAACGATGCGAAATCCCTAGAAGAACTCTTCCACAGAGCTTACAACCACTCCGTTTGGGTTCTCAACAAGTATTCGGTGAATGGATCTGCGGCGG
ATAAGCTGAAGGAGATTTGTAATAGCTCCTAG
mRNA sequenceShow/hide mRNA sequence
GAAACTGAAGCGATCGAAATCGAGATCGAGAACCAGACGGCGGAGCATTTCGATCGGCGAGAAATGGAGAAGGCCCTGCGAATATACGCCGAGGTTCTGAGGCTGGTGAG
GCGGTTGCCGAAGGATTCGAGGCCTTACTACGCTAAATACGCTCGAGAGAATTTCGTCAACTACAGAGAAGTCGATGCGAACGATGCGAAATCCCTAGAAGAACTCTTCC
ACAGAGCTTACAACCACTCCGTTTGGGTTCTCAACAAGTATTCGGTGAATGGATCTGCGGCGGATAAGCTGAAGGAGATTTGTAATAGCTCCTAGTTAGTGTGCGATTTC
CGTCATTTGTTTGAAATAATGCCTCAAAGGGATCGGCGTTGGTTTTGCCCTTGCAACTCCGGCTACTACTGCCGCCGTGGATTCTGACGAATTCGTTGCCGGTACGCTTT
TGGAGGATTATTGAATTAAAAAATTTTATGTTCTTCACGTTGAAAAATAATGTTTGCAAATTATGTTTATAGGATAATTGAGAATAAGTTGTCTATTTAATCAGATAATT
GTTTATATAAA
Protein sequenceShow/hide protein sequence
MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSVWVLNKYSVNGSAADKLKEICNSS