; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh04G005290 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G005290
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionDNA repair and recombination protein RAD54-like isoform 1
Genome locationCmo_Chr04:2627869..2628306
RNA-Seq ExpressionCmoCh04G005290
SyntenyCmoCh04G005290
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600329.1 hypothetical protein SDJN03_05562, partial [Cucurbita argyrosperma subsp. sororia]4.9e-75100Show/hide
Query:  MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKDSSRNLLVKTTLRDELQVNEDDDEEEEDVSFPKLTKTYWKEK
        MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKDSSRNLLVKTTLRDELQVNEDDDEEEEDVSFPKLTKTYWKEK
Subjt:  MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKDSSRNLLVKTTLRDELQVNEDDDEEEEDVSFPKLTKTYWKEK

Query:  FGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNG
        FGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNG
Subjt:  FGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNG

XP_022942817.1 uncharacterized protein LOC111447733 [Cucurbita moschata]4.9e-75100Show/hide
Query:  MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKDSSRNLLVKTTLRDELQVNEDDDEEEEDVSFPKLTKTYWKEK
        MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKDSSRNLLVKTTLRDELQVNEDDDEEEEDVSFPKLTKTYWKEK
Subjt:  MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKDSSRNLLVKTTLRDELQVNEDDDEEEEDVSFPKLTKTYWKEK

Query:  FGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNG
        FGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNG
Subjt:  FGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNG

XP_022983127.1 uncharacterized protein LOC111481767 [Cucurbita maxima]7.9e-7398.62Show/hide
Query:  MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKDSSRNLLVKTTLRDELQVNEDDDEEEEDVSFPKLTKTYWKEK
        MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKDSSRNLLVKTTLRDELQVNEDDD EEEDVSFPKLTKTYWKEK
Subjt:  MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKDSSRNLLVKTTLRDELQVNEDDDEEEEDVSFPKLTKTYWKEK

Query:  FGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNG
        FGFRRSHFVS+KQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNG
Subjt:  FGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNG

XP_023516088.1 uncharacterized protein LOC111780054 [Cucurbita pepo subsp. pepo]3.5e-7398.63Show/hide
Query:  MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKDSSRNLLVKTTLRDELQVNEDDD-EEEEDVSFPKLTKTYWKE
        MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLK+SSRNLLVKTTLRDELQVNEDDD EEEEDVSFPKLTKTYWKE
Subjt:  MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKDSSRNLLVKTTLRDELQVNEDDD-EEEEDVSFPKLTKTYWKE

Query:  KFGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNG
        KFGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNG
Subjt:  KFGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNG

XP_038877999.1 uncharacterized protein LOC120070205 [Benincasa hispida]2.9e-5983.44Show/hide
Query:  MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKDSSR--NLLVKTTLRDELQVNEDDDEEEEDVSFPKLTK----
        MDPRISFSNDFVET+  LK+ENIYREAPVSSDFEFSVK+RCMI+ADEIF QG+LLPLKDSSR  NLLVKTTLRDELQVNE+DDEE+E VSFPK TK    
Subjt:  MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKDSSR--NLLVKTTLRDELQVNEDDDEEEEDVSFPKLTK----

Query:  TYWKEKFGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNG
        + WKEKFGFRRSHFV +KQ RNEGVLKTVEEE+K+SVFLHEDLINIARKNG
Subjt:  TYWKEKFGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNG

TrEMBL top hitse value%identityAlignment
A0A0A0L727 Uncharacterized protein1.7e-5781.33Show/hide
Query:  MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKDSSRN-LLVKTTLRDELQVNEDDDEEEEDVSFPKLTK----T
        MDPRISFSNDFVET+ PLKLENIYREAPVSSDFEFSVKDRCMI+ADEIF QG+LLPLKDS RN +LVKTTLRDELQVN    EEE+D SFPK TK    +
Subjt:  MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKDSSRN-LLVKTTLRDELQVNEDDDEEEEDVSFPKLTK----T

Query:  YWKEKFGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNG
         WKEKFGFR+SHFV++KQ RNE VLKTVEEED++SVFLHEDLINIARKNG
Subjt:  YWKEKFGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNG

A0A1S3C2L8 uncharacterized protein LOC1034961602.9e-5780.67Show/hide
Query:  MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKDSSRN-LLVKTTLRDELQVNEDDDEEEEDVSFPKLTK----T
        MDPRISFSNDFVET+ PLKLENIYREAPVSSDFEFSVKDRCMI+ADEIF QG+LLPLKDS RN +LVKTTLRDELQVN    EEE+D+SFPK TK    +
Subjt:  MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKDSSRN-LLVKTTLRDELQVNEDDDEEEEDVSFPKLTK----T

Query:  YWKEKFGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNG
         WKEKFGFR+ HFV++KQ RNE VLKTVEEED++SVFLHEDLINIARKNG
Subjt:  YWKEKFGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNG

A0A5A7T4Q1 Uncharacterized protein2.9e-5780.67Show/hide
Query:  MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKDSSRN-LLVKTTLRDELQVNEDDDEEEEDVSFPKLTK----T
        MDPRISFSNDFVET+ PLKLENIYREAPVSSDFEFSVKDRCMI+ADEIF QG+LLPLKDS RN +LVKTTLRDELQVN    EEE+D+SFPK TK    +
Subjt:  MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKDSSRN-LLVKTTLRDELQVNEDDDEEEEDVSFPKLTK----T

Query:  YWKEKFGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNG
         WKEKFGFR+ HFV++KQ RNE VLKTVEEED++SVFLHEDLINIARKNG
Subjt:  YWKEKFGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNG

A0A6J1FRB6 uncharacterized protein LOC1114477332.4e-75100Show/hide
Query:  MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKDSSRNLLVKTTLRDELQVNEDDDEEEEDVSFPKLTKTYWKEK
        MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKDSSRNLLVKTTLRDELQVNEDDDEEEEDVSFPKLTKTYWKEK
Subjt:  MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKDSSRNLLVKTTLRDELQVNEDDDEEEEDVSFPKLTKTYWKEK

Query:  FGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNG
        FGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNG
Subjt:  FGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNG

A0A6J1IYE6 uncharacterized protein LOC1114817673.8e-7398.62Show/hide
Query:  MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKDSSRNLLVKTTLRDELQVNEDDDEEEEDVSFPKLTKTYWKEK
        MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKDSSRNLLVKTTLRDELQVNEDDD EEEDVSFPKLTKTYWKEK
Subjt:  MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKDSSRNLLVKTTLRDELQVNEDDDEEEEDVSFPKLTKTYWKEK

Query:  FGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNG
        FGFRRSHFVS+KQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNG
Subjt:  FGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G05980.1 unknown protein2.2e-0430.69Show/hide
Query:  MDPRISFSN------DFVETQLPLKLENIYREAPVSSDFEF----SVKDRCMIAADEIFCQGRLLPLKDSSRNLLVKTTLRDELQVNEDDDEEEEDVSFP
        + PRISFS+      DF+     +  E++ + +   SDFEF    +V  + M+ ADE+F +G+LLP      +  +K      L+ NE+++ E+  V   
Subjt:  MDPRISFSN------DFVETQLPLKLENIYREAPVSSDFEF----SVKDRCMIAADEIFCQGRLLPLKDSSRNLLVKTTLRDELQVNEDDDEEEEDVSFP

Query:  K
        K
Subjt:  K

AT3G19200.1 unknown protein1.6e-1035.77Show/hide
Query:  MDPRISFSNDFVETQLPLKLENI-----YREAPVSSDFEFSVKD-RCMIAADEIFCQGRLLPLKDSSRNLLVKTTLRDELQVNEDDDEEEEDVSFPKLTK
        +D RISFSNDF ++              Y+EAPVSSDF+F+V++     AADEIF  G LLPL+ +++  +  TTLRDEL   + D      +S  K ++
Subjt:  MDPRISFSNDFVETQLPLKLENI-----YREAPVSSDFEFSVKD-RCMIAADEIFCQGRLLPLKDSSRNLLVKTTLRDELQVNEDDDEEEEDVSFPKLTK

Query:  TYWKEKFGFRRSHFVSRKQ----HRNEGVLKTVEEED
         +W  K G  +S  +        H+++  L ++ E D
Subjt:  TYWKEKFGFRRSHFVSRKQ----HRNEGVLKTVEEED

AT3G50640.1 unknown protein1.2e-1038.35Show/hide
Query:  RISFSNDFVETQLP---LKLENIYREAPV---SSDFEFSVKDRCMIAADEIFCQGRLLPLKDSSRNLLVKTTLRDELQVNEDDDEEEEDV---------S
        RISFSN+FVE +      K  NI   +     S+DF FSV D  MI ADEIF +G++LP K++S    V  TL +EL   E+    + +          S
Subjt:  RISFSNDFVETQLP---LKLENIYREAPV---SSDFEFSVKDRCMIAADEIFCQGRLLPLKDSSRNLLVKTTLRDELQVNEDDDEEEEDV---------S

Query:  FPKLTKTYWKEKFGFRRSHFVSRKQHR-NEGVL
            TK  W+E  G +R+H  S+K  + NE VL
Subjt:  FPKLTKTYWKEKFGFRRSHFVSRKQHR-NEGVL

AT4G34419.1 unknown protein1.1e-1142.24Show/hide
Query:  DPRISFSNDFVETQLPLKLENI-YREAPVSS-DFEFSVKDRCMIAADEIFCQGRLLPLKDSSRNLLVKTTLRDELQVNEDDDEEEEDVSFPKLTKTYWKE
        +PRISFS+ F  T    K E I Y+EAPVSS DFEF V++  M  ADEIF  G +LPLK+        +TLR+EL  +E+D +     S  K +  +W+E
Subjt:  DPRISFSNDFVETQLPLKLENI-YREAPVSS-DFEFSVKDRCMIAADEIFCQGRLLPLKDSSRNLLVKTTLRDELQVNEDDDEEEEDVSFPKLTKTYWKE

Query:  KFGFRRSHFVSRKQHR
        + G   +   S+K H+
Subjt:  KFGFRRSHFVSRKQHR

AT5G66800.1 unknown protein1.3e-1236.03Show/hide
Query:  MDPRISFSNDFVETQLPLKLENIYREAPV----------SSDFEFSVKDRCMIAADEIFCQGRLLPLKDSSRNLLVKTTLRDELQVNEDDDEEEEDV---
        M PRISFSNDFVE  +  +     R +P+          S +FEFSV +  M+ ADE+F +G+LLP K++++   V+ TLR+EL V ED++E   D    
Subjt:  MDPRISFSNDFVETQLPLKLENIYREAPV----------SSDFEFSVKDRCMIAADEIFCQGRLLPLKDSSRNLLVKTTLRDELQVNEDDDEEEEDV---

Query:  ------------SFPKLTKTYWKEKFGFRRSHFVSR
                    S    +K  WK   G +R+H  S+
Subjt:  ------------SFPKLTKTYWKEKFGFRRSHFVSR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCAAGAATTTCGTTTTCAAATGATTTTGTTGAGACACAGCTGCCATTGAAGCTTGAGAACATCTACAGAGAAGCACCAGTTTCTTCTGATTTTGAGTTCAGTGT
TAAGGACAGATGTATGATTGCAGCAGATGAGATTTTCTGTCAGGGGAGGCTGCTGCCATTGAAGGACAGTTCAAGGAACCTTTTGGTGAAGACAACATTAAGAGATGAGT
TGCAAGTGAATGAAGATGATGATGAAGAAGAAGAAGATGTTTCATTTCCAAAGCTAACAAAAACTTACTGGAAGGAGAAGTTTGGGTTCAGAAGATCCCATTTTGTTTCC
AGGAAACAGCATAGAAATGAAGGGGTTTTGAAAACTGTGGAAGAGGAAGATAAAAGCTCTGTTTTTCTTCATGAGGATCTCATAAATATTGCAAGAAAAAATGGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATCCAAGAATTTCGTTTTCAAATGATTTTGTTGAGACACAGCTGCCATTGAAGCTTGAGAACATCTACAGAGAAGCACCAGTTTCTTCTGATTTTGAGTTCAGTGT
TAAGGACAGATGTATGATTGCAGCAGATGAGATTTTCTGTCAGGGGAGGCTGCTGCCATTGAAGGACAGTTCAAGGAACCTTTTGGTGAAGACAACATTAAGAGATGAGT
TGCAAGTGAATGAAGATGATGATGAAGAAGAAGAAGATGTTTCATTTCCAAAGCTAACAAAAACTTACTGGAAGGAGAAGTTTGGGTTCAGAAGATCCCATTTTGTTTCC
AGGAAACAGCATAGAAATGAAGGGGTTTTGAAAACTGTGGAAGAGGAAGATAAAAGCTCTGTTTTTCTTCATGAGGATCTCATAAATATTGCAAGAAAAAATGGGTAA
Protein sequenceShow/hide protein sequence
MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKDSSRNLLVKTTLRDELQVNEDDDEEEEDVSFPKLTKTYWKEKFGFRRSHFVS
RKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNG