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CmoCh04G005400 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G005400
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPinin_SDK_memA domain-containing protein
Genome locationCmo_Chr04:2681909..2682565
RNA-Seq ExpressionCmoCh04G005400
SyntenyCmoCh04G005400
Gene Ontology termsGO:0006396 - RNA processing (biological process)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK25967.1 pinin [Cucumis melo var. makuwa]3.5e-1759.8Show/hide
Query:  DRFYGLEASRREELYEYQEQIGEQYVANVEQVKELGRWQNARRARKGHSDVWKLQETMD------------RIGTSQGGSNEKDEDSVEDIKVEEDEIID
        + F   +ASRREEL EYQ+QIGEQY+ANVE  K+L RWQNARRARKG +DV  LQETMD            +  T  GGSN +DED VEDI V ED++ID
Subjt:  DRFYGLEASRREELYEYQEQIGEQYVANVEQVKELGRWQNARRARKGHSDVWKLQETMD------------RIGTSQGGSNEKDEDSVEDIKVEEDEIID

Query:  DV
        DV
Subjt:  DV

XP_004140691.1 pinin [Cucumis sativus]6.0e-1759.8Show/hide
Query:  DRFYGLEASRREELYEYQEQIGEQYVANVEQVKELGRWQNARRARKGHSDVWKLQETMDR-IGTSQ-----------GGSNEKDEDSVEDIKVEEDEIID
        + F   +ASRREEL EYQ+QIGEQY+ANVE  K+L RWQNARRARKG +DV  LQETMD+ + T +           GGSN +DED VEDI V ED++ID
Subjt:  DRFYGLEASRREELYEYQEQIGEQYVANVEQVKELGRWQNARRARKGHSDVWKLQETMDR-IGTSQ-----------GGSNEKDEDSVEDIKVEEDEIID

Query:  DV
        DV
Subjt:  DV

XP_016901910.1 PREDICTED: pinin [Cucumis melo]3.5e-1759.8Show/hide
Query:  DRFYGLEASRREELYEYQEQIGEQYVANVEQVKELGRWQNARRARKGHSDVWKLQETMD------------RIGTSQGGSNEKDEDSVEDIKVEEDEIID
        + F   +ASRREEL EYQ+QIGEQY+ANVE  K+L RWQNARRARKG +DV  LQETMD            +  T  GGSN +DED VEDI V ED++ID
Subjt:  DRFYGLEASRREELYEYQEQIGEQYVANVEQVKELGRWQNARRARKGHSDVWKLQETMD------------RIGTSQGGSNEKDEDSVEDIKVEEDEIID

Query:  DV
        DV
Subjt:  DV

XP_023517279.1 uncharacterized protein LOC111781085 [Cucurbita pepo subsp. pepo]1.5e-3673.88Show/hide
Query:  MKQDNFRALMEEINEEAKGKDARKSQEETSGSDA--------------QSTRSMGNKIICGTADRFYGLEASRREELYEYQEQIGEQYVANVEQVKELGR
        MKQDNFRALMEEINEEAKGKDARKSQEETSGSDA               S R  GNK     A  F  LEAS+REELYEYQEQIGEQYVANVEQV E GR
Subjt:  MKQDNFRALMEEINEEAKGKDARKSQEETSGSDA--------------QSTRSMGNKIICGTADRFYGLEASRREELYEYQEQIGEQYVANVEQVKELGR

Query:  WQNARRARKGHSDVWKLQETMDRIGTSQGGSNEK
        WQNARRARKGHSDVWKLQETMDRIGTSQ  + +K
Subjt:  WQNARRARKGHSDVWKLQETMDRIGTSQGGSNEK

XP_038902762.1 pinin [Benincasa hispida]1.0e-1658.82Show/hide
Query:  DRFYGLEASRREELYEYQEQIGEQYVANVEQVKELGRWQNARRARKGHSDVWKLQETMDR-IGTSQ-----------GGSNEKDEDSVEDIKVEEDEIID
        + F   + SRREEL EYQ+QIGEQY+ANVE  K+L RWQNARRARKG++DV  LQETMD+ + T +           GGSN +DED VEDI V ED++ID
Subjt:  DRFYGLEASRREELYEYQEQIGEQYVANVEQVKELGRWQNARRARKGHSDVWKLQETMDR-IGTSQ-----------GGSNEKDEDSVEDIKVEEDEIID

Query:  DV
        DV
Subjt:  DV

TrEMBL top hitse value%identityAlignment
A0A0A0L734 Pinin_SDK_memA domain-containing protein2.9e-1759.8Show/hide
Query:  DRFYGLEASRREELYEYQEQIGEQYVANVEQVKELGRWQNARRARKGHSDVWKLQETMDR-IGTSQ-----------GGSNEKDEDSVEDIKVEEDEIID
        + F   +ASRREEL EYQ+QIGEQY+ANVE  K+L RWQNARRARKG +DV  LQETMD+ + T +           GGSN +DED VEDI V ED++ID
Subjt:  DRFYGLEASRREELYEYQEQIGEQYVANVEQVKELGRWQNARRARKGHSDVWKLQETMDR-IGTSQ-----------GGSNEKDEDSVEDIKVEEDEIID

Query:  DV
        DV
Subjt:  DV

A0A1S4E1Q0 pinin1.7e-1759.8Show/hide
Query:  DRFYGLEASRREELYEYQEQIGEQYVANVEQVKELGRWQNARRARKGHSDVWKLQETMD------------RIGTSQGGSNEKDEDSVEDIKVEEDEIID
        + F   +ASRREEL EYQ+QIGEQY+ANVE  K+L RWQNARRARKG +DV  LQETMD            +  T  GGSN +DED VEDI V ED++ID
Subjt:  DRFYGLEASRREELYEYQEQIGEQYVANVEQVKELGRWQNARRARKGHSDVWKLQETMD------------RIGTSQGGSNEKDEDSVEDIKVEEDEIID

Query:  DV
        DV
Subjt:  DV

A0A5D3DQL5 Pinin1.7e-1759.8Show/hide
Query:  DRFYGLEASRREELYEYQEQIGEQYVANVEQVKELGRWQNARRARKGHSDVWKLQETMD------------RIGTSQGGSNEKDEDSVEDIKVEEDEIID
        + F   +ASRREEL EYQ+QIGEQY+ANVE  K+L RWQNARRARKG +DV  LQETMD            +  T  GGSN +DED VEDI V ED++ID
Subjt:  DRFYGLEASRREELYEYQEQIGEQYVANVEQVKELGRWQNARRARKGHSDVWKLQETMD------------RIGTSQGGSNEKDEDSVEDIKVEEDEIID

Query:  DV
        DV
Subjt:  DV

A0A6J1D7F9 pinin6.4e-1758.82Show/hide
Query:  DRFYGLEASRREELYEYQEQIGEQYVANVEQVKELGRWQNARRARKGHSDVWKLQETMDR-IGTSQ-----------GGSNEKDEDSVEDIKVEEDEIID
        + F   +ASRREEL EYQ+QIGEQY+ANVE  K+L RWQNARRARKG++DV  LQETMD+ + T +           GGSN +DED VEDI   ED++ID
Subjt:  DRFYGLEASRREELYEYQEQIGEQYVANVEQVKELGRWQNARRARKGHSDVWKLQETMDR-IGTSQ-----------GGSNEKDEDSVEDIKVEEDEIID

Query:  DV
        DV
Subjt:  DV

A0A6J1J351 pinin8.4e-1758.82Show/hide
Query:  DRFYGLEASRREELYEYQEQIGEQYVANVEQVKELGRWQNARRARKGHSDVWKLQETMDR-IGTSQ-----------GGSNEKDEDSVEDIKVEEDEIID
        + F   +ASR EEL EYQ+QIGEQY+ANVE  K+L RWQNARRARKG++DV  LQETMD+ + T +           GGSN +DED VEDI V ED++ID
Subjt:  DRFYGLEASRREELYEYQEQIGEQYVANVEQVKELGRWQNARRARKGHSDVWKLQETMDR-IGTSQ-----------GGSNEKDEDSVEDIKVEEDEIID

Query:  DV
        DV
Subjt:  DV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G15200.1 protein-protein interaction regulator family protein2.6e-1040.16Show/hide
Query:  QEETSGSDAQSTRSMGNKIICGTADRFYGLEASRREELYEYQEQIGEQYVANVEQVKELGRWQNARRARKGHSDVWKLQETMDR-IGTSQ----------
        +E+TS  + Q  R+            F   +A+RR+E+ EYQ++I EQ + NVE  KEL RWQNAR+ARK +++   LQETMD+ + T +          
Subjt:  QEETSGSDAQSTRSMGNKIICGTADRFYGLEASRREELYEYQEQIGEQYVANVEQVKELGRWQNARRARKGHSDVWKLQETMDR-IGTSQ----------

Query:  ---GGSNEKDEDSVEDIKVEEDEIIDD
           G  +E +ED VEDI   EDE+I D
Subjt:  ---GGSNEKDEDSVEDIKVEEDEIIDD

AT1G15200.2 protein-protein interaction regulator family protein2.6e-1040.16Show/hide
Query:  QEETSGSDAQSTRSMGNKIICGTADRFYGLEASRREELYEYQEQIGEQYVANVEQVKELGRWQNARRARKGHSDVWKLQETMDR-IGTSQ----------
        +E+TS  + Q  R+            F   +A+RR+E+ EYQ++I EQ + NVE  KEL RWQNAR+ARK +++   LQETMD+ + T +          
Subjt:  QEETSGSDAQSTRSMGNKIICGTADRFYGLEASRREELYEYQEQIGEQYVANVEQVKELGRWQNARRARKGHSDVWKLQETMDR-IGTSQ----------

Query:  ---GGSNEKDEDSVEDIKVEEDEIIDD
           G  +E +ED VEDI   EDE+I D
Subjt:  ---GGSNEKDEDSVEDIKVEEDEIIDD

AT1G15200.3 protein-protein interaction regulator family protein2.6e-1040.16Show/hide
Query:  QEETSGSDAQSTRSMGNKIICGTADRFYGLEASRREELYEYQEQIGEQYVANVEQVKELGRWQNARRARKGHSDVWKLQETMDR-IGTSQ----------
        +E+TS  + Q  R+            F   +A+RR+E+ EYQ++I EQ + NVE  KEL RWQNAR+ARK +++   LQETMD+ + T +          
Subjt:  QEETSGSDAQSTRSMGNKIICGTADRFYGLEASRREELYEYQEQIGEQYVANVEQVKELGRWQNARRARKGHSDVWKLQETMDR-IGTSQ----------

Query:  ---GGSNEKDEDSVEDIKVEEDEIIDD
           G  +E +ED VEDI   EDE+I D
Subjt:  ---GGSNEKDEDSVEDIKVEEDEIIDD

AT1G15200.4 protein-protein interaction regulator family protein4.9e-0944.05Show/hide
Query:  QEETSGSDAQSTRSMGNKIICGTADRFYGLEASRREELYEYQEQIGEQYVANVEQVKELGRWQNARRARKGHSDVWKLQETMDR
        +E+TS  + Q  R+            F   +A+RR+E+ EYQ++I EQ + NVE  KEL RWQNAR+ARK +++   LQETMD+
Subjt:  QEETSGSDAQSTRSMGNKIICGTADRFYGLEASRREELYEYQEQIGEQYVANVEQVKELGRWQNARRARKGHSDVWKLQETMDR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCAAGATAACTTTCGCGCATTGATGGAGGAGATAAATGAAGAAGCCAAAGGAAAGGATGCAAGGAAGTCTCAAGAAGAAACATCTGGGAGTGATGCACAGTCTAC
CAGATCGATGGGAAACAAAATCATTTGCGGGACAGCGGATCGCTTTTATGGATTGGAAGCCTCCAGAAGAGAGGAGTTGTATGAGTATCAGGAACAGATAGGAGAACAGT
ATGTTGCAAATGTTGAGCAGGTGAAGGAGTTGGGGAGGTGGCAAAATGCAAGGAGGGCAAGAAAAGGACATAGTGATGTATGGAAATTGCAGGAAACCATGGACAGAATT
GGAACATCCCAAGGTGGTAGCAACGAAAAAGACGAGGATAGTGTGGAAGATATTAAAGTTGAGGAGGATGAAATAATAGACGATGTACCCGCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGCAAGATAACTTTCGCGCATTGATGGAGGAGATAAATGAAGAAGCCAAAGGAAAGGATGCAAGGAAGTCTCAAGAAGAAACATCTGGGAGTGATGCACAGTCTAC
CAGATCGATGGGAAACAAAATCATTTGCGGGACAGCGGATCGCTTTTATGGATTGGAAGCCTCCAGAAGAGAGGAGTTGTATGAGTATCAGGAACAGATAGGAGAACAGT
ATGTTGCAAATGTTGAGCAGGTGAAGGAGTTGGGGAGGTGGCAAAATGCAAGGAGGGCAAGAAAAGGACATAGTGATGTATGGAAATTGCAGGAAACCATGGACAGAATT
GGAACATCCCAAGGTGGTAGCAACGAAAAAGACGAGGATAGTGTGGAAGATATTAAAGTTGAGGAGGATGAAATAATAGACGATGTACCCGCGTAG
Protein sequenceShow/hide protein sequence
MKQDNFRALMEEINEEAKGKDARKSQEETSGSDAQSTRSMGNKIICGTADRFYGLEASRREELYEYQEQIGEQYVANVEQVKELGRWQNARRARKGHSDVWKLQETMDRI
GTSQGGSNEKDEDSVEDIKVEEDEIIDDVPA