CuGenDBv2

Gene ID	CmoCh04G005860
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	S4 RNA-binding domain-containing protein
Genome location	Cmo_Chr04:2924111..2928752
RNA-Seq Expression	CmoCh04G005860
Synteny	CmoCh04G005860
Gene Ontology terms	GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR002942 - RNA-binding S4 domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR017506 - Photosystem II S4 IPR036986 - RNA-binding S4 domain superfamily IPR040591 - YlmH, putative RNA-binding domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6600381.1 hypothetical protein SDJN03_05614, partial [Cucurbita argyrosperma subsp. sororia]

9.7e-172

99.07

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Query:  MAAATASIGALWSLRRAARSSSFRTPLAVNLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
        MAAATASIGALWSLRRAA+SSSFRTPLA+NLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
Subjt:  MAAATASIGALWSLRRAARSSSFRTPLAVNLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFQTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI
        NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVF TCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI
Subjt:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFQTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI

Query:  VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR
        VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR
Subjt:  VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR

Query:  LKIGEINPTKKGKFAIELIKYV
        LKIGEINPTKKGKFAIELIKYV
Subjt:  LKIGEINPTKKGKFAIELIKYV

XP_022941558.1 uncharacterized protein LOC111446880 isoform X1 [Cucurbita moschata]

1.6e-171

99.69

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Query:  MAAATASIGALWSLRRAARSSSFRTPLAVNLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
        MAAATASIGALWSLRRAARSSSFRTPLAVNLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
Subjt:  MAAATASIGALWSLRRAARSSSFRTPLAVNLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFQTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI
        NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFQTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI
Subjt:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFQTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI

Query:  VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFI-SGGDVRVNWTTITKNGTILKTGDIVSVSGKG
        VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFI SGGDVRVNWTTITKNGTILKTGDIVSVSGKG
Subjt:  VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFI-SGGDVRVNWTTITKNGTILKTGDIVSVSGKG

Query:  RLKIGEINPTKKGKFAIELIKYV
        RLKIGEINPTKKGKFAIELIKYV
Subjt:  RLKIGEINPTKKGKFAIELIKYV

XP_022941560.1 uncharacterized protein LOC111446880 isoform X2 [Cucurbita moschata]

6.7e-173

100

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Query:  MAAATASIGALWSLRRAARSSSFRTPLAVNLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
        MAAATASIGALWSLRRAARSSSFRTPLAVNLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
Subjt:  MAAATASIGALWSLRRAARSSSFRTPLAVNLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFQTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI
        NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFQTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI
Subjt:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFQTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI

Query:  VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR
        VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR
Subjt:  VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR

Query:  LKIGEINPTKKGKFAIELIKYV
        LKIGEINPTKKGKFAIELIKYV
Subjt:  LKIGEINPTKKGKFAIELIKYV

XP_022981895.1 uncharacterized protein LOC111480897 isoform X1 [Cucurbita maxima]

3.2e-167

96.27

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Query:  MAAATASIGALWSLRRAARSSSFRTPLAVNLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
        MAAATASIGALWSLRRAA+SSS RTPLAVNL KVSFHEARFP+SPSSPLG+SGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
Subjt:  MAAATASIGALWSLRRAARSSSFRTPLAVNLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFQTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI
        NFLTPPVVKESMLAI+KLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNF+F TCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI
Subjt:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFQTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI

Query:  VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR
        VPELVDFLVSSL KVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFIS GDVRVNWTTITKNGTILKTGDIVSVSGKGR
Subjt:  VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR

Query:  LKIGEINPTKKGKFAIELIKYV
        LKIGEINPTKKGKFA+ELI+YV
Subjt:  LKIGEINPTKKGKFAIELIKYV

XP_023554595.1 uncharacterized protein LOC111811761 isoform X1 [Cucurbita pepo subsp. pepo]

3.1e-170

98.45

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Query:  MAAATASIGALWSLRRAARSSSFRTPLAVNLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
        MAAATASIGALWSLRRA  SSSFRTPLAVNL KVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
Subjt:  MAAATASIGALWSLRRAARSSSFRTPLAVNLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFQTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI
        NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPD+VSALSITGNFVF TCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI
Subjt:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFQTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI

Query:  VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR
        VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR
Subjt:  VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR

Query:  LKIGEINPTKKGKFAIELIKYV
        LKIGEINPTKKGKFAIELIKYV
Subjt:  LKIGEINPTKKGKFAIELIKYV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LC56 S4 RNA-binding domain-containing protein

5.4e-152

88.2

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Query:  MAAATASIGALWSLRRAARSSSFRTPLAVNLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
        MAA   SI ALWSLRRAA+ SSFR PLA+NL ++ F+EARF   PSSPLG SG+CQLVQAVKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHT
Subjt:  MAAATASIGALWSLRRAARSSSFRTPLAVNLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFQTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI
        NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPD++SALSITGNF F  C+HGDFLG+ILGTGIAREKLGDI+LQEE GAQVVI
Subjt:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFQTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI

Query:  VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR
        VPELVDFL+SSLRKVGNVTVSCTRIPLT L+YEPPKTKTFKTIEASLRVDA+ASAGFKISRSKLVD IS GDVRVNWT+ITKNGTILKTGDIVSVSGKGR
Subjt:  VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR

Query:  LKIGEINPTKKGKFAIELIKYV
        LKIGEIN TKKGKFA+ELI+YV
Subjt:  LKIGEINPTKKGKFAIELIKYV

A0A6J1CP18 uncharacterized protein LOC111012786 isoform X1

3.2e-152

88.09

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Query:  ATASIGALWSLRRAARSSSFRTPLAVNLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFL
        A  SIGALWSLRRAA++SSFR PLA+NL   SFH+ARFP SPSSP G+SG+CQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFL
Subjt:  ATASIGALWSLRRAARSSSFRTPLAVNLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFL

Query:  TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFQTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVPE
        TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPD++SALSITGNF F  C+HGDFLG+ILGTGIAREKLGDIILQ E GAQVV+VPE
Subjt:  TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFQTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVPE

Query:  LVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGRLKI
        LVDFL+SSLRKVGNVTVSCTRIPLT LDYEPPKTKTF TIEASLRVDA+ASAGFKISRSKLVD IS GDVRVNWT +TKNGT LKTGD+VSVSGKGRLKI
Subjt:  LVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGRLKI

Query:  GEINPTKKGKFAIELIKYV
        GEIN TKKGKF++ELI+YV
Subjt:  GEINPTKKGKFAIELIKYV

A0A6J1FSF6 uncharacterized protein LOC111446880 isoform X1

8.0e-172

99.69

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Query:  MAAATASIGALWSLRRAARSSSFRTPLAVNLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
        MAAATASIGALWSLRRAARSSSFRTPLAVNLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
Subjt:  MAAATASIGALWSLRRAARSSSFRTPLAVNLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFQTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI
        NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFQTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI
Subjt:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFQTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI

Query:  VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFI-SGGDVRVNWTTITKNGTILKTGDIVSVSGKG
        VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFI SGGDVRVNWTTITKNGTILKTGDIVSVSGKG
Subjt:  VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFI-SGGDVRVNWTTITKNGTILKTGDIVSVSGKG

Query:  RLKIGEINPTKKGKFAIELIKYV
        RLKIGEINPTKKGKFAIELIKYV
Subjt:  RLKIGEINPTKKGKFAIELIKYV

A0A6J1FU11 uncharacterized protein LOC111446880 isoform X2

3.2e-173

100

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Query:  MAAATASIGALWSLRRAARSSSFRTPLAVNLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
        MAAATASIGALWSLRRAARSSSFRTPLAVNLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
Subjt:  MAAATASIGALWSLRRAARSSSFRTPLAVNLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFQTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI
        NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFQTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI
Subjt:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFQTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI

Query:  VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR
        VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR
Subjt:  VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR

Query:  LKIGEINPTKKGKFAIELIKYV
        LKIGEINPTKKGKFAIELIKYV
Subjt:  LKIGEINPTKKGKFAIELIKYV

A0A6J1J103 uncharacterized protein LOC111480897 isoform X1

1.6e-167

96.27

Show/hide

Query:  MAAATASIGALWSLRRAARSSSFRTPLAVNLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
        MAAATASIGALWSLRRAA+SSS RTPLAVNL KVSFHEARFP+SPSSPLG+SGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
Subjt:  MAAATASIGALWSLRRAARSSSFRTPLAVNLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFQTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI
        NFLTPPVVKESMLAI+KLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNF+F TCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI
Subjt:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFQTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI

Query:  VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR
        VPELVDFLVSSL KVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFIS GDVRVNWTTITKNGTILKTGDIVSVSGKGR
Subjt:  VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR

Query:  LKIGEINPTKKGKFAIELIKYV
        LKIGEINPTKKGKFA+ELI+YV
Subjt:  LKIGEINPTKKGKFAIELIKYV

SwissProt top hits

e value

%identity

Alignment

P71020 Putative RNA-binding protein YlmH

4.0e-19

30.18

Show/hide

Query:  TNFLTPPVVKESML--AIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPD--VVSALSITGNFVFQTCTHGDFLGAILGTGIAREKLGDIILQEEKG
        T+FL P   +E ++  A+   ADV     GGY  AER R ++   + +T +     + A ++     F +  H   LGA++G G+ R+K GDI+   E  
Subjt:  TNFLTPPVVKESML--AIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPD--VVSALSITGNFVFQTCTHGDFLGAILGTGIAREKLGDIILQEEKG

Query:  AQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSV
         Q+++  +  DF+ + L + G   VS  +I L+DL+      +      +SLR+DA+ ++  + SR K    +  G V+VNW  +     I+  GD++S+
Subjt:  AQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSV

Query:  SGKGRLKIGEI-NPTKKGKFAI
         G GR  + +I   TKK K+ +
Subjt:  SGKGRLKIGEI-NPTKKGKFAI

Arabidopsis top hits

e value

%identity

Alignment

AT1G53120.1 RNA-binding S4 domain-containing protein

1.2e-114

66.25

Show/hide

Query:  ATASIGALW-SLRRAARSSSFRTPLAVNLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNF
        A  S+   W  LR A RS +  + L  N  K        P+S      A   C   +A+KGD+D LL GVGD+ V  +VK IL MA+R+ S+REVLHT+F
Subjt:  ATASIGALW-SLRRAARSSSFRTPLAVNLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNF

Query:  LTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFQTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVP
        LTPP+VKES+  ++K ADVK +AQGGYPEAERCRIS+GH D LTSDPD+V+ALSITGNF FQ C+HGDFLGAILGTGI+REKLGDI++QEEKGAQV+IVP
Subjt:  LTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFQTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVP

Query:  ELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGRLK
        ELVDF+V++L KVGNV V+C++IPL  L+YEPP+T +FKT+EASLR+DA+ASAGFKISRSKLVD IS  DVRVNW T+TKNGTI+KTGD+VSVSGKGRLK
Subjt:  ELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGRLK

Query:  IGEINPTKKGKFAIELIKYV
        IGEIN TKKGKFA+E+I+Y+
Subjt:  IGEINPTKKGKFAIELIKYV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCGGCAGCGACTGCGAGCATTGGAGCTCTGTGGAGCCTAAGAAGAGCAGCTCGATCTTCCAGTTTCCGAACTCCCCTTGCCGTTAATCTCGGCAAGGTCTCATTCCA
CGAGGCCCGGTTTCCCTCTTCTCCATCTTCTCCTCTTGGCGCCTCAGGAATGTGCCAATTAGTGCAGGCTGTGAAGGGAGACATTGATGTTTTACTCAATGGAGTTGGAG
ATAAAGGTGTTATTGTAGATGTGAAACATATTCTTGTTATGGCCAAACGTTCGTTATCGAGACGAGAAGTTCTCCATACAAACTTTCTCACTCCACCTGTGGTGAAAGAG
TCGATGCTAGCCATTCAGAAACTAGCCGACGTTAAAGCAATAGCGCAGGGAGGATATCCAGAGGCAGAGCGCTGTCGGATTTCTGTTGGGCATGCTGATGAACTAACAAG
TGATCCAGACGTCGTTTCGGCATTGAGTATCACAGGAAATTTTGTGTTTCAGACCTGCACACATGGGGACTTCCTTGGAGCAATTCTTGGCACAGGCATTGCTAGGGAAA
AGCTTGGTGATATCATACTCCAGGAAGAGAAGGGAGCTCAAGTAGTTATTGTTCCAGAACTCGTCGACTTCCTTGTATCATCGCTGCGCAAGGTTGGCAATGTCACGGTT
TCTTGTACGAGGATTCCATTGACAGATCTCGATTATGAACCACCGAAGACTAAGACATTTAAAACCATTGAGGCATCTCTTAGGGTTGATGCTCTAGCAAGTGCTGGATT
CAAGATTTCACGGTCTAAACTAGTGGATTTCATCAGTGGCGGTGATGTACGTGTCAATTGGACGACGATTACTAAAAATGGAACCATACTAAAGACTGGTGATATTGTTT
CTGTTAGTGGGAAAGGGAGACTAAAGATTGGCGAAATAAATCCTACAAAGAAGGGAAAATTCGCCATCGAGCTTATCAAGTACGTGTAA

mRNA sequence

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CCGCCGGTGTTCAGGACGATACGCACTAACCATGGCGGCAGCGACTGCGAGCATTGGAGCTCTGTGGAGCCTAAGAAGAGCAGCTCGATCTTCCAGTTTCCGAACTCCCC
TTGCCGTTAATCTCGGCAAGGTCTCATTCCACGAGGCCCGGTTTCCCTCTTCTCCATCTTCTCCTCTTGGCGCCTCAGGAATGTGCCAATTAGTGCAGGCTGTGAAGGGA
GACATTGATGTTTTACTCAATGGAGTTGGAGATAAAGGTGTTATTGTAGATGTGAAACATATTCTTGTTATGGCCAAACGTTCGTTATCGAGACGAGAAGTTCTCCATAC
AAACTTTCTCACTCCACCTGTGGTGAAAGAGTCGATGCTAGCCATTCAGAAACTAGCCGACGTTAAAGCAATAGCGCAGGGAGGATATCCAGAGGCAGAGCGCTGTCGGA
TTTCTGTTGGGCATGCTGATGAACTAACAAGTGATCCAGACGTCGTTTCGGCATTGAGTATCACAGGAAATTTTGTGTTTCAGACCTGCACACATGGGGACTTCCTTGGA
GCAATTCTTGGCACAGGCATTGCTAGGGAAAAGCTTGGTGATATCATACTCCAGGAAGAGAAGGGAGCTCAAGTAGTTATTGTTCCAGAACTCGTCGACTTCCTTGTATC
ATCGCTGCGCAAGGTTGGCAATGTCACGGTTTCTTGTACGAGGATTCCATTGACAGATCTCGATTATGAACCACCGAAGACTAAGACATTTAAAACCATTGAGGCATCTC
TTAGGGTTGATGCTCTAGCAAGTGCTGGATTCAAGATTTCACGGTCTAAACTAGTGGATTTCATCAGTGGCGGTGATGTACGTGTCAATTGGACGACGATTACTAAAAAT
GGAACCATACTAAAGACTGGTGATATTGTTTCTGTTAGTGGGAAAGGGAGACTAAAGATTGGCGAAATAAATCCTACAAAGAAGGGAAAATTCGCCATCGAGCTTATCAA
GTACGTGTAAGCTCTGGTGTATTGGATCGTTCGGAGTTGAACTGGGTAAAGATTGTCATGGAATCTCCCTCGAGGTCGAACATCAAGGAAGCATGAGAATAATTAAATTT
CATCAGATTAGAGAGAGAAATTCTCAGAAGGTCCACATATACGCACCCAAATCGGCGGAACCCATAGTCCTCGAATCCTCCGGCGACGGAGCACCACCGCACCCATCCAC
GTCAGCGGCACCGGAGAGGAGATGAACCAGCGGCGGACTCACAGGGGAGAAGAACGGCGCCTGCAGATTCTCCTGGATGCTCCGAAGGTTCGGGAAGGCCGAGACGGAGA
GATTATGACCACCACCAGCCGGGAAGCTTGCAGCGGGGTAGCTCAGGTTGTTGGTGGAGAAACAGGTCACGTGCAGCTGGTGCTCCCTTTGGTCGTCGAGAGAGCTGCCG
TCGCGGTTGGCGAAGGCGGAGGTGCTGATACTGGTATCAGCAGCAGCAGAGAGGTAGGGAGATGAATCGAGAAGAGGAGGCAGAGACACCGAGGAAGGGGAAGTGGGTTC
GGGATCACCGCGAGTTTTCTTCATCACGCCGCCGTGCATGGCGGCGCTGGTTTTCTTGAAAACTCTGGATATCACCCATTCATCCTGCGTTTCATATTTATTATATATAT
ATATATATAGTTACAACATTAATTCTAAGGCAACCATATAGTCGCAACATTTTAATATTTAATATAAGGTTCG

Protein sequence

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MAAATASIGALWSLRRAARSSSFRTPLAVNLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKE
SMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFQTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTV
SCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGRLKIGEINPTKKGKFAIELIKYV

CmoCh04G005860 (gene) of Cucurbita moschata (Rifu) v1 genome