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CmoCh04G005940 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G005940
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionTranscription elongation factor 1 homolog
Genome locationCmo_Chr04:2962686..2966319
RNA-Seq ExpressionCmoCh04G005940
SyntenyCmoCh04G005940
Gene Ontology termsGO:0006368 - transcription elongation from RNA polymerase II promoter (biological process)
GO:0006414 - translational elongation (biological process)
GO:0008023 - transcription elongation factor complex (cellular component)
GO:0000993 - RNA polymerase II complex binding (molecular function)
GO:0003746 - translation elongation factor activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR007808 - Transcription elongation factor 1
IPR038567 - Transcription elongation factor 1 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011082718.1 transcription elongation factor 1 homolog [Sesamum indicum]2.2e-4193.18Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSITALSEPIDIYSEWIDECERVNNPEDDDS
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQE FST++TAL+EPIDIYSEWIDECERVNNPEDDD+
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSITALSEPIDIYSEWIDECERVNNPEDDDS

XP_018850127.1 transcription elongation factor 1 homolog isoform X2 [Juglans regia]1.9e-4094.19Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSITALSEPIDIYSEWIDECERVNNPEDD
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQE FST++TAL+EPIDIYSEWIDECERVNN EDD
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSITALSEPIDIYSEWIDECERVNNPEDD

XP_022142747.1 transcription elongation factor 1 homolog [Momordica charantia]1.4e-4093.18Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSITALSEPIDIYSEWIDECERVNNPEDDDS
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQEGFST+ITAL+EPIDIYSEWIDECERVNN E+DD+
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSITALSEPIDIYSEWIDECERVNNPEDDDS

XP_022922476.1 transcription elongation factor 1 homolog [Cucurbita moschata]1.1e-4091.95Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSITALSEPIDIYSEWIDECERVNNPEDDD
        MGKRKS AKPPP+KRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQE FST++TAL+EPIDIYSEWIDECERVNNPE+DD
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSITALSEPIDIYSEWIDECERVNNPEDDD

XP_022943265.1 transcription elongation factor 1 homolog [Cucurbita moschata]4.0e-43100Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSITALSEPIDIYSEWIDECERVNNPEDD
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSITALSEPIDIYSEWIDECERVNNPEDD
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSITALSEPIDIYSEWIDECERVNNPEDD

TrEMBL top hitse value%identityAlignment
A0A6I9TIA1 Transcription elongation factor 1 homolog1.1e-4193.18Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSITALSEPIDIYSEWIDECERVNNPEDDDS
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQE FST++TAL+EPIDIYSEWIDECERVNNPEDDD+
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSITALSEPIDIYSEWIDECERVNNPEDDDS

A0A6J1E485 Transcription elongation factor 1 homolog5.3e-4191.95Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSITALSEPIDIYSEWIDECERVNNPEDDD
        MGKRKS AKPPP+KRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQE FST++TAL+EPIDIYSEWIDECERVNNPE+DD
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSITALSEPIDIYSEWIDECERVNNPEDDD

A0A6J1FXL7 Transcription elongation factor 1 homolog1.9e-43100Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSITALSEPIDIYSEWIDECERVNNPEDD
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSITALSEPIDIYSEWIDECERVNNPEDD
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSITALSEPIDIYSEWIDECERVNNPEDD

A0A6J1J7P5 Transcription elongation factor 1 homolog1.9e-43100Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSITALSEPIDIYSEWIDECERVNNPEDD
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSITALSEPIDIYSEWIDECERVNNPEDD
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSITALSEPIDIYSEWIDECERVNNPEDD

A0A6J1JCJ5 Transcription elongation factor 1 homolog5.3e-4191.95Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSITALSEPIDIYSEWIDECERVNNPEDDD
        MGKRKS AKPPP+KRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQE FST++TAL+EPIDIYSEWIDECERVNNPE+DD
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSITALSEPIDIYSEWIDECERVNNPEDDD

SwissProt top hitse value%identityAlignment
A4IFR3 Transcription elongation factor 1 homolog7.6e-2154.88Show/hide
Query:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSITALSEPIDIYSEWIDECERVN
        MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T IT LSEP+D+YS+WID CE  N
Subjt:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSITALSEPIDIYSEWIDECERVN

P60002 Transcription elongation factor 1 homolog7.6e-2154.88Show/hide
Query:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSITALSEPIDIYSEWIDECERVN
        MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T IT LSEP+D+YS+WID CE  N
Subjt:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSITALSEPIDIYSEWIDECERVN

P60003 Transcription elongation factor 1 homolog7.6e-2154.88Show/hide
Query:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSITALSEPIDIYSEWIDECERVN
        MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T IT LSEP+D+YS+WID CE  N
Subjt:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSITALSEPIDIYSEWIDECERVN

Q8LEF3 Transcription elongation factor 1 homolog2.9e-3681.4Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSITALSEPIDIYSEWIDECERVNNPEDD
        MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+C IC+E FST+ITAL+E IDIYSEWIDECERVN  EDD
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSITALSEPIDIYSEWIDECERVNNPEDD

Q8LHP0 Transcription elongation factor 1 homolog2.3e-4189.66Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSITALSEPIDIYSEWIDECERVNNPEDDD
        MGKRKS AKPPPKKRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASC ICQE FST++ AL+EPIDIYSEWIDECERVNN EDDD
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSITALSEPIDIYSEWIDECERVNNPEDDD

Arabidopsis top hitse value%identityAlignment
AT5G46030.1 unknown protein2.0e-3781.4Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSITALSEPIDIYSEWIDECERVNNPEDD
        MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+C IC+E FST+ITAL+E IDIYSEWIDECERVN  EDD
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSITALSEPIDIYSEWIDECERVNNPEDD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGAAAAGGAAGTCGAGAGCGAAGCCCCCACCTAAGAAGAGAATGGACAAGCTTGATACTGTTTTTAGCTGCCCCTTCTGCAATCATGGCACCAGTGTGGAGTGTCG
CATTGATATGAAGAACTTGATTGGGGAAGCCTCCTGTGGAATTTGCCAAGAAGGCTTTAGCACATCCATTACAGCCTTAAGCGAGCCAATAGACATATATAGCGAATGGA
TCGATGAATGTGAGCGGGTCAACAACCCTGAAGACGATGATTCAAAATAA
mRNA sequenceShow/hide mRNA sequence
CCCGCGAGACGACTACAACTGCGAAAGATAATCCATCCCAATTCGATCAGCAATCAGCCTCACGCCATAAGAAATGGGGAAAAGGAAGTCGAGAGCGAAGCCCCCACCTA
AGAAGAGAATGGACAAGCTTGATACTGTTTTTAGCTGCCCCTTCTGCAATCATGGCACCAGTGTGGAGTGTCGCATTGATATGAAGAACTTGATTGGGGAAGCCTCCTGT
GGAATTTGCCAAGAAGGCTTTAGCACATCCATTACAGCCTTAAGCGAGCCAATAGACATATATAGCGAATGGATCGATGAATGTGAGCGGGTCAACAACCCTGAAGACGA
TGATTCAAAATAA
Protein sequenceShow/hide protein sequence
MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSITALSEPIDIYSEWIDECERVNNPEDDDSK