; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh04G006630 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G006630
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description60S ribosomal protein L27
Genome locationCmo_Chr04:3296734..3297141
RNA-Seq ExpressionCmoCh04G006630
SyntenyCmoCh04G006630
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001141 - Ribosomal protein L27e
IPR008991 - Translation protein SH3-like domain superfamily
IPR018262 - Ribosomal protein L27e, conserved site
IPR038655 - Ribosomal protein L27e superfamily
IPR041991 - Eukaryotic Ribosomal Protein L27, KOW domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022931548.1 60S ribosomal protein L27-2-like [Cucurbita moschata]3.3e-6597.78Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSL
        MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAG+KKYP+KVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVT+DSL
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

XP_022931553.1 60S ribosomal protein L27-2-like [Cucurbita moschata]4.3e-6597.04Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSL
        MVKFLKQNKAVI+LQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAG+KKYP+KVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVT+DSL
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

XP_022942297.1 60S ribosomal protein L27-2 [Cucurbita moschata]6.7e-66100Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSL
        MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSL
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

XP_022983323.1 60S ribosomal protein L27-2 [Cucurbita maxima]4.3e-6599.26Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSL
        MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSL
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
         SKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

XP_022985069.1 60S ribosomal protein L27-2-like [Cucurbita maxima]7.4e-6596.3Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSL
        MVKFLKQNKAVI+LQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAG+KKYP+KVIRKDSSKKTAKKSRVKAFIK+VNYRHLMPTRYTLDVDLKDVVT+DSL
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

TrEMBL top hitse value%identityAlignment
A0A6J1EZ01 60S ribosomal protein L271.6e-6597.78Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSL
        MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAG+KKYP+KVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVT+DSL
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

A0A6J1EZ07 60S ribosomal protein L272.1e-6597.04Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSL
        MVKFLKQNKAVI+LQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAG+KKYP+KVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVT+DSL
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

A0A6J1FPU8 60S ribosomal protein L273.2e-66100Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSL
        MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSL
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

A0A6J1J7F7 60S ribosomal protein L272.1e-6599.26Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSL
        MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSL
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
         SKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

A0A6J1JA75 60S ribosomal protein L271.6e-6597.78Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSL
        MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAG+KKYP+KVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVT+DSL
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

SwissProt top hitse value%identityAlignment
P41101 60S ribosomal protein L277.4e-5276.98Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDL----KDVVT
        M KFLK NKAVI+LQG+YAGRKAVI+RAFD+GTRDR YGHCLVAG+ +YP KVIRKDS+KK  KKSRVKAFIKLVNY H+MPTRYTLD DL    KDVV 
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDL----KDVVT

Query:  VDSLQSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
         D LQ++DKKVT A+ TK R  ERFKTGKNRWFFTKLRF
Subjt:  VDSLQSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

P51419 60S ribosomal protein L27-37.4e-6085.93Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSL
        MVKFLKQNKAVI+LQGRYAG+KAVII++FDDG RDR YGHCLVAGLKKYPSKVIRKDS+KKTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+D+L
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QSKDKKV A KE K + EERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

Q05462 60S ribosomal protein L271.1e-5883.7Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSL
        MVKFLK NKAVI+LQGRYAG+KAVI++ FDDGTR++ YGHCLVAG+KK+PSKVI+KDS+KKTAKKSRVKAF+KLVNY+HLMPTRYTLDVDLKD V  D L
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QSKDKKVTA KETKK  EERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

Q8LCL3 60S ribosomal protein L27-27.4e-6085.93Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSL
        MVKFLKQNKAVI+LQGRYAG+KAVII++FDDGT DR YGHCLVAGLKKYPSKVIRKDS+KKTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+D+L
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
        +SKDKKVTA KE K + EERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

Q9SKX8 60S ribosomal protein L27-13.6e-5476.3Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSL
        MVK +K  KAVI+LQGRY G+KAVI+++FDDGT ++ YGHCLVAGLKKYPSKVIRKDS+KKTAKKSRVK F K++NY+H+MPTRYTLD+DLK+VV+ D++
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
         SKDKKVTA KE K +FEERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

Arabidopsis top hitse value%identityAlignment
AT2G32220.1 Ribosomal L27e protein family2.5e-5576.3Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSL
        MVK +K  KAVI+LQGRY G+KAVI+++FDDGT ++ YGHCLVAGLKKYPSKVIRKDS+KKTAKKSRVK F K++NY+H+MPTRYTLD+DLK+VV+ D++
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
         SKDKKVTA KE K +FEERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

AT3G22230.1 Ribosomal L27e protein family5.3e-6185.93Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSL
        MVKFLKQNKAVI+LQGRYAG+KAVII++FDDGT DR YGHCLVAGLKKYPSKVIRKDS+KKTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+D+L
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
        +SKDKKVTA KE K + EERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

AT4G15000.1 Ribosomal L27e protein family5.3e-6185.93Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSL
        MVKFLKQNKAVI+LQGRYAG+KAVII++FDDG RDR YGHCLVAGLKKYPSKVIRKDS+KKTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+D+L
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QSKDKKV A KE K + EERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

AT4G15000.2 Ribosomal L27e protein family2.4e-5384.55Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSL
        MVKFLKQNKAVI+LQGRYAG+KAVII++FDDG RDR YGHCLVAGLKKYPSKVIRKDS+KKTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+D+L
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSL

Query:  QSKDKKVTAAKETKKRFEERFKT
        QSKDKKV A KE K + EERFKT
Subjt:  QSKDKKVTAAKETKKRFEERFKT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAAATTCCTCAAGCAGAACAAGGCCGTCATCGTCCTTCAAGGACGTTACGCCGGTCGGAAGGCGGTCATCATTCGCGCCTTTGACGACGGAACTCGGGATCGTGC
TTATGGTCACTGCTTGGTCGCCGGACTCAAGAAGTATCCGTCGAAGGTCATTAGGAAGGATTCTTCTAAGAAGACTGCTAAGAAGTCCAGAGTCAAGGCCTTCATTAAGC
TTGTTAATTACAGACATCTAATGCCGACCAGGTACACTCTCGATGTAGATCTAAAGGATGTCGTCACCGTCGATTCCTTGCAGTCGAAGGACAAGAAGGTCACAGCCGCT
AAAGAGACCAAGAAGAGATTCGAGGAGAGGTTCAAAACCGGCAAGAACAGGTGGTTTTTCACCAAGCTCAGGTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGAAATTCCTCAAGCAGAACAAGGCCGTCATCGTCCTTCAAGGACGTTACGCCGGTCGGAAGGCGGTCATCATTCGCGCCTTTGACGACGGAACTCGGGATCGTGC
TTATGGTCACTGCTTGGTCGCCGGACTCAAGAAGTATCCGTCGAAGGTCATTAGGAAGGATTCTTCTAAGAAGACTGCTAAGAAGTCCAGAGTCAAGGCCTTCATTAAGC
TTGTTAATTACAGACATCTAATGCCGACCAGGTACACTCTCGATGTAGATCTAAAGGATGTCGTCACCGTCGATTCCTTGCAGTCGAAGGACAAGAAGGTCACAGCCGCT
AAAGAGACCAAGAAGAGATTCGAGGAGAGGTTCAAAACCGGCAAGAACAGGTGGTTTTTCACCAAGCTCAGGTTCTGA
Protein sequenceShow/hide protein sequence
MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAA
KETKKRFEERFKTGKNRWFFTKLRF