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CmoCh04G006960 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G006960
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRING-type domain-containing protein
Genome locationCmo_Chr04:3459307..3459817
RNA-Seq ExpressionCmoCh04G006960
SyntenyCmoCh04G006960
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0046620 - regulation of organ growth (biological process)
GO:0080113 - regulation of seed growth (biological process)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsIPR039301 - Protein Sip5/DA2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600482.1 E3 ubiquitin-protein ligase DA2, partial [Cucurbita argyrosperma subsp. sororia]5.9e-5198.99Show/hide
Query:  MGNKLGRRRQIVDEKYTKPQGLYNHKEVDHKKLRKLILESKLAPCYPGDEESATDLEECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQYP
        MGNKLGRRRQIVDEKYTKPQGLYNHKEVDHKKLRKLILESKLAPCYPGDEESATDLEECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQ P
Subjt:  MGNKLGRRRQIVDEKYTKPQGLYNHKEVDHKKLRKLILESKLAPCYPGDEESATDLEECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQYP

XP_022942226.1 uncharacterized protein LOC111447344 isoform X1 [Cucurbita moschata]5.9e-5198.99Show/hide
Query:  MGNKLGRRRQIVDEKYTKPQGLYNHKEVDHKKLRKLILESKLAPCYPGDEESATDLEECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQYP
        MGNKLGRRRQIVDEKYTKPQGLYNHKEVDHKKLRKLILESKLAPCYPGDEESATDLEECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQ P
Subjt:  MGNKLGRRRQIVDEKYTKPQGLYNHKEVDHKKLRKLILESKLAPCYPGDEESATDLEECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQYP

XP_022942234.1 uncharacterized protein LOC111447344 isoform X2 [Cucurbita moschata]5.9e-5198.99Show/hide
Query:  MGNKLGRRRQIVDEKYTKPQGLYNHKEVDHKKLRKLILESKLAPCYPGDEESATDLEECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQYP
        MGNKLGRRRQIVDEKYTKPQGLYNHKEVDHKKLRKLILESKLAPCYPGDEESATDLEECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQ P
Subjt:  MGNKLGRRRQIVDEKYTKPQGLYNHKEVDHKKLRKLILESKLAPCYPGDEESATDLEECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQYP

XP_022980864.1 uncharacterized protein LOC111480127 isoform X1 [Cucurbita maxima]5.9e-5198.99Show/hide
Query:  MGNKLGRRRQIVDEKYTKPQGLYNHKEVDHKKLRKLILESKLAPCYPGDEESATDLEECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQYP
        MGNKLGRRRQIVDEKYTKPQGLYNHKEVDHKKLRKLILESKLAPCYPGDEESATDLEECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQ P
Subjt:  MGNKLGRRRQIVDEKYTKPQGLYNHKEVDHKKLRKLILESKLAPCYPGDEESATDLEECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQYP

XP_022980888.1 uncharacterized protein LOC111480127 isoform X2 [Cucurbita maxima]5.9e-5198.99Show/hide
Query:  MGNKLGRRRQIVDEKYTKPQGLYNHKEVDHKKLRKLILESKLAPCYPGDEESATDLEECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQYP
        MGNKLGRRRQIVDEKYTKPQGLYNHKEVDHKKLRKLILESKLAPCYPGDEESATDLEECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQ P
Subjt:  MGNKLGRRRQIVDEKYTKPQGLYNHKEVDHKKLRKLILESKLAPCYPGDEESATDLEECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQYP

TrEMBL top hitse value%identityAlignment
A0A0A0KYU8 RING-type domain-containing protein1.9e-5096.97Show/hide
Query:  MGNKLGRRRQIVDEKYTKPQGLYNHKEVDHKKLRKLILESKLAPCYPGDEESATDLEECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQYP
        MGNKLGRRRQIVDEKYT+PQGLYNHKEVDHKKLRKLILESKLAPCYPGDEESA+DLEECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQ P
Subjt:  MGNKLGRRRQIVDEKYTKPQGLYNHKEVDHKKLRKLILESKLAPCYPGDEESATDLEECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQYP

A0A6J1FPN0 uncharacterized protein LOC111447344 isoform X12.9e-5198.99Show/hide
Query:  MGNKLGRRRQIVDEKYTKPQGLYNHKEVDHKKLRKLILESKLAPCYPGDEESATDLEECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQYP
        MGNKLGRRRQIVDEKYTKPQGLYNHKEVDHKKLRKLILESKLAPCYPGDEESATDLEECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQ P
Subjt:  MGNKLGRRRQIVDEKYTKPQGLYNHKEVDHKKLRKLILESKLAPCYPGDEESATDLEECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQYP

A0A6J1FQQ3 uncharacterized protein LOC111447344 isoform X22.9e-5198.99Show/hide
Query:  MGNKLGRRRQIVDEKYTKPQGLYNHKEVDHKKLRKLILESKLAPCYPGDEESATDLEECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQYP
        MGNKLGRRRQIVDEKYTKPQGLYNHKEVDHKKLRKLILESKLAPCYPGDEESATDLEECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQ P
Subjt:  MGNKLGRRRQIVDEKYTKPQGLYNHKEVDHKKLRKLILESKLAPCYPGDEESATDLEECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQYP

A0A6J1IXT2 uncharacterized protein LOC111480127 isoform X12.9e-5198.99Show/hide
Query:  MGNKLGRRRQIVDEKYTKPQGLYNHKEVDHKKLRKLILESKLAPCYPGDEESATDLEECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQYP
        MGNKLGRRRQIVDEKYTKPQGLYNHKEVDHKKLRKLILESKLAPCYPGDEESATDLEECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQ P
Subjt:  MGNKLGRRRQIVDEKYTKPQGLYNHKEVDHKKLRKLILESKLAPCYPGDEESATDLEECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQYP

A0A6J1J0L3 uncharacterized protein LOC111480127 isoform X22.9e-5198.99Show/hide
Query:  MGNKLGRRRQIVDEKYTKPQGLYNHKEVDHKKLRKLILESKLAPCYPGDEESATDLEECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQYP
        MGNKLGRRRQIVDEKYTKPQGLYNHKEVDHKKLRKLILESKLAPCYPGDEESATDLEECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQ P
Subjt:  MGNKLGRRRQIVDEKYTKPQGLYNHKEVDHKKLRKLILESKLAPCYPGDEESATDLEECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQYP

SwissProt top hitse value%identityAlignment
A4GWX9 E3 ubiquitin-protein ligase GW24.3e-3668.63Show/hide
Query:  MGNKLGRRRQI-VDEKYTKPQGLYNHKEVDHKKLRKLILESKLAPCYPG--DEESATDLEECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQ
        MGN++G RR+  V+E+YT+PQGLY H+++D KKLRKLILE+KLAPCY G  D  +A DLEECPICFLYYPSLNRS+CC K ICTECFLQMK  ++ +PTQ
Subjt:  MGNKLGRRRQI-VDEKYTKPQGLYNHKEVDHKKLRKLILESKLAPCYPG--DEESATDLEECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQ

Query:  YP
         P
Subjt:  YP

A5DQJ8 Protein SIP55.8e-0972.22Show/hide
Query:  TDLEECPICFLYYPS-LNRSRCCMKSICTECFLQMK
        +D  ECPICFLYYPS LN SRCC++ ICTECF+Q+K
Subjt:  TDLEECPICFLYYPS-LNRSRCCMKSICTECFLQMK

B9F4Q9 E3 ubiquitin-protein ligase GW24.3e-3668.63Show/hide
Query:  MGNKLGRRRQI-VDEKYTKPQGLYNHKEVDHKKLRKLILESKLAPCYPG--DEESATDLEECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQ
        MGN++G RR+  V+E+YT+PQGLY H+++D KKLRKLILE+KLAPCY G  D  +A DLEECPICFLYYPSLNRS+CC K ICTECFLQMK  ++ +PTQ
Subjt:  MGNKLGRRRQI-VDEKYTKPQGLYNHKEVDHKKLRKLILESKLAPCYPG--DEESATDLEECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQ

Query:  YP
         P
Subjt:  YP

Q93YV5 E3 ubiquitin-protein ligase DA21.0e-4584.85Show/hide
Query:  MGNKLGRRRQIVDEKYTKPQGLYNHKEVDHKKLRKLILESKLAPCYPGDEESATDLEECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQYP
        MGNKLGR+RQ+V+E+YTKPQGLY +K+VD KKLRKLI+ESKLAPCYPGD+ES  DLEECPICFLYYPSLNRSRCCMKSICTECFLQMK PNS RPTQ P
Subjt:  MGNKLGRRRQIVDEKYTKPQGLYNHKEVDHKKLRKLILESKLAPCYPGDEESATDLEECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQYP

Q940G8 E3 ubiquitin-protein ligase DA2L2.0e-4180.58Show/hide
Query:  MGNKLGRRRQIVDEKYTKP-QGLYNHKEVDHKKLRKLILESKLAPCYPGDEESAT---DLEECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPT
        MGNKLGR+RQIVDE+YTKP QGLY  K+VD KKL+KLILESKLAPCYPG EE+ +   DLEECPICFLYYPSLNRSRCCMKSICTECFL+MK PNS +PT
Subjt:  MGNKLGRRRQIVDEKYTKP-QGLYNHKEVDHKKLRKLILESKLAPCYPGDEESAT---DLEECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPT

Query:  QYP
        Q P
Subjt:  QYP

Arabidopsis top hitse value%identityAlignment
AT1G17145.1 RING/U-box superfamily protein1.4e-4280.58Show/hide
Query:  MGNKLGRRRQIVDEKYTKP-QGLYNHKEVDHKKLRKLILESKLAPCYPGDEESAT---DLEECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPT
        MGNKLGR+RQIVDE+YTKP QGLY  K+VD KKL+KLILESKLAPCYPG EE+ +   DLEECPICFLYYPSLNRSRCCMKSICTECFL+MK PNS +PT
Subjt:  MGNKLGRRRQIVDEKYTKP-QGLYNHKEVDHKKLRKLILESKLAPCYPGDEESAT---DLEECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPT

Query:  QYP
        Q P
Subjt:  QYP

AT1G78420.1 RING/U-box superfamily protein7.2e-4784.85Show/hide
Query:  MGNKLGRRRQIVDEKYTKPQGLYNHKEVDHKKLRKLILESKLAPCYPGDEESATDLEECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQYP
        MGNKLGR+RQ+V+E+YTKPQGLY +K+VD KKLRKLI+ESKLAPCYPGD+ES  DLEECPICFLYYPSLNRSRCCMKSICTECFLQMK PNS RPTQ P
Subjt:  MGNKLGRRRQIVDEKYTKPQGLYNHKEVDHKKLRKLILESKLAPCYPGDEESATDLEECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQYP

AT1G78420.2 RING/U-box superfamily protein7.2e-4784.85Show/hide
Query:  MGNKLGRRRQIVDEKYTKPQGLYNHKEVDHKKLRKLILESKLAPCYPGDEESATDLEECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQYP
        MGNKLGR+RQ+V+E+YTKPQGLY +K+VD KKLRKLI+ESKLAPCYPGD+ES  DLEECPICFLYYPSLNRSRCCMKSICTECFLQMK PNS RPTQ P
Subjt:  MGNKLGRRRQIVDEKYTKPQGLYNHKEVDHKKLRKLILESKLAPCYPGDEESATDLEECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQYP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTAATAAGCTAGGAAGGAGGAGACAAATAGTTGATGAGAAGTACACAAAGCCTCAGGGGCTTTACAATCATAAAGAAGTGGATCATAAGAAACTTAGGAAACTCAT
ACTCGAATCAAAGCTAGCTCCATGTTATCCTGGAGATGAAGAATCTGCCACTGATCTTGAAGAATGCCCCATATGCTTTCTGTATTATCCGAGTCTCAATCGATCAAGAT
GTTGCATGAAAAGCATTTGTACAGAGTGTTTTCTACAGATGAAAGTTCCAAATTCTACCCGGCCTACACAGTATCCTTCACCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTAATAAGCTAGGAAGGAGGAGACAAATAGTTGATGAGAAGTACACAAAGCCTCAGGGGCTTTACAATCATAAAGAAGTGGATCATAAGAAACTTAGGAAACTCAT
ACTCGAATCAAAGCTAGCTCCATGTTATCCTGGAGATGAAGAATCTGCCACTGATCTTGAAGAATGCCCCATATGCTTTCTGTATTATCCGAGTCTCAATCGATCAAGAT
GTTGCATGAAAAGCATTTGTACAGAGTGTTTTCTACAGATGAAAGTTCCAAATTCTACCCGGCCTACACAGTATCCTTCACCATGA
Protein sequenceShow/hide protein sequence
MGNKLGRRRQIVDEKYTKPQGLYNHKEVDHKKLRKLILESKLAPCYPGDEESATDLEECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQYPSP