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CmoCh04G007510 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G007510
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionarabinogalactan peptide 22-like
Genome locationCmo_Chr04:3740521..3741887
RNA-Seq ExpressionCmoCh04G007510
SyntenyCmoCh04G007510
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600532.1 Arabinogalactan protein 20, partial [Cucurbita argyrosperma subsp. sororia]1.2e-09100Show/hide
Query:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSD
        MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSD
Subjt:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSD
KAG7031172.1 Arabinogalactan peptide 20 [Cucurbita argyrosperma subsp. argyrosperma]1.2e-09100Show/hide
Query:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSD
        MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSD
Subjt:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSD
XP_022931316.1 arabinogalactan peptide 22-like [Cucurbita moschata]1.7e-0892.31Show/hide
Query:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSD
        MAVSR SFGFVAAAAL+F IFLPVAQPQSLAPAPAPTSD
Subjt:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSD
XP_022941572.1 arabinogalactan peptide 22-like [Cucurbita moschata]1.2e-09100Show/hide
Query:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSD
        MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSD
Subjt:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSD
XP_023522233.1 arabinogalactan peptide 22-like [Cucurbita pepo subsp. pepo]1.2e-09100Show/hide
Query:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSD
        MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSD
Subjt:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSD
TrEMBL top hitse value%identityAlignment
A0A0A0KZS8 Uncharacterized protein2.9e-0679.49Show/hide
Query:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSD
        MAVSR+SFG +AA AL+F IFLPVA P SLAPAPAPTSD
Subjt:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSD
A0A6J1C4C2 arabinogalactan peptide 22-like4.4e-0784.62Show/hide
Query:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSD
        MAVSRASFGFVAAAAL+F IFLPVA P SL PAPAP+SD
Subjt:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSD
A0A6J1ETC6 arabinogalactan peptide 22-like8.1e-0992.31Show/hide
Query:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSD
        MAVSR SFGFVAAAAL+F IFLPVAQPQSLAPAPAPTSD
Subjt:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSD
A0A6J1FMT5 arabinogalactan peptide 22-like5.6e-10100Show/hide
Query:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSD
        MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSD
Subjt:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSD
A0A6J1J4V7 arabinogalactan peptide 208.1e-0992.31Show/hide
Query:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSD
        MAVSR SFGFVAAAAL+F IFLPVAQPQSLAPAPAPTSD
Subjt:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSD
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G24105.1 arabinogalactan protein 417.7e-0453.85Show/hide
Query:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSD
        M+ SR  FG     +++F I LP+A  QS APAPAPTSD
Subjt:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSD

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGTTTCTAGGGCATCTTTTGGATTCGTGGCTGCCGCTGCGCTCGTCTTCACCATCTTCTTGCCGGTTGCTCAGCCTCAGTCTTTGGCTCCGGCTCCCGCTCCCAC
CAGCGACGAAGGAAATCAACTAATTGGAATGCGTGCAATGGGAATTGACAGGGACATCCATAGATCAAGGGATAGCTTATATCTTAATGGGGGTGGCATTGGCGCTCACA
TATCTCATCCACAGTGCTGA
mRNA sequenceShow/hide mRNA sequence
CCCGTCGCGAGACTGCCTCTGTTTCCGTCTAGAGATTTCGTCTTCTTCTTCATTTCGCCCTTCGAGAAGAGAAAGGGAGATTCCTTTCCTTCTCTCTCTCTCTCTGCGAG
CCTCTTTGAAGCTATTGGAGAAGAAGCCTTTTGAAGCTTCTTTACCTGAGAGTCGCATCGCAGAGAGAGATCTAACCTACTGTACAACATTTCTTGCGATTCTTCGCCTA
CAGAAAGGAGAGGGGAAATTACCGCACGATTCGGACTCATATGGCGGTTTCTAGGGCATCTTTTGGATTCGTGGCTGCCGCTGCGCTCGTCTTCACCATCTTCTTGCCGG
TTGCTCAGCCTCAGTCTTTGGCTCCGGCTCCCGCTCCCACCAGCGACGAAGGAAATCAACTAATTGGAATGCGTGCAATGGGAATTGACAGGGACATCCATAGATCAAGG
GATAGCTTATATCTTAATGGGGGTGGCATTGGCGCTCACATATCTCATCCACAGTGCTGA
Protein sequenceShow/hide protein sequence
MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDEGNQLIGMRAMGIDRDIHRSRDSLYLNGGGIGAHISHPQC