CuGenDBv2

Gene ID	CmoCh04G007660
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	WD_REPEATS_REGION domain-containing protein
Genome location	Cmo_Chr04:3841372..3843709
RNA-Seq Expression	CmoCh04G007660
Synteny	CmoCh04G007660
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6600548.1 WD repeat-containing protein 7, partial [Cucurbita argyrosperma subsp. sororia]

6.2e-17

95.83

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Query:  EDYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGSFQI
        +D VRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGSFQI
Subjt:  EDYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGSFQI

XP_022942318.1 uncharacterized protein LOC111447401 isoform X1 [Cucurbita moschata]

5.6e-18

97.92

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Query:  EDYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGSFQI
        +DYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGSFQI
Subjt:  EDYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGSFQI

XP_022942319.1 uncharacterized protein LOC111447401 isoform X2 [Cucurbita moschata]

5.6e-18

97.92

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Query:  EDYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGSFQI
        +DYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGSFQI
Subjt:  EDYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGSFQI

XP_023548773.1 uncharacterized protein LOC111807326 isoform X1 [Cucurbita pepo subsp. pepo]

6.2e-17

95.83

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Query:  EDYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGSFQI
        +D VRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGSFQI
Subjt:  EDYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGSFQI

XP_023548781.1 uncharacterized protein LOC111807326 isoform X2 [Cucurbita pepo subsp. pepo]

6.2e-17

95.83

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Query:  EDYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGSFQI
        +D VRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGSFQI
Subjt:  EDYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGSFQI

TrEMBL top hits

e value

%identity

Alignment

A0A6J1C5P3 uncharacterized protein LOC111008200 isoform X1

1.2e-13

83.33

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Query:  EDYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGSFQI
        +D VR LSHADILKILIHSLDLSYRLEWT ERK++L RHGNELG+FQI
Subjt:  EDYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGSFQI

A0A6J1FQY9 uncharacterized protein LOC111447401 isoform X2

2.7e-18

97.92

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Query:  EDYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGSFQI
        +DYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGSFQI
Subjt:  EDYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGSFQI

A0A6J1FUI1 uncharacterized protein LOC111447401 isoform X1

2.7e-18

97.92

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Query:  EDYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGSFQI
        +DYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGSFQI
Subjt:  EDYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGSFQI

A0A6J1IR27 uncharacterized protein LOC111478602 isoform X1

2.5e-16

91.67

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Query:  EDYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGSFQI
        +D  RDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELG+FQI
Subjt:  EDYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGSFQI

A0A6J1IUW3 uncharacterized protein LOC111478602 isoform X2

2.5e-16

91.67

Show/hide

Query:  EDYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGSFQI
        +D  RDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELG+FQI
Subjt:  EDYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGSFQI

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G11270.1 Transducin/WD40 repeat-like superfamily protein

2.5e-08

53.33

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Query:  EDYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGS
        ++  +++SH + LK L+  LDLSYRLEW  ERK+ LTRH  ELG+
Subjt:  EDYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGS

Sequences

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CDS sequence

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mRNA sequence

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ATGGTGGTCATTGGGATCTGTATGGTGGGAGAAACTAAGCCGCAACTTTGTTCCTGTTCAATGCACCAAAGTGATATTTGTTTCTCCATGGGAGGGATTCTCGCCCAATT
CTTCGAGGACTACGTAAGGGATTTGAGTCATGCAGACATTTTGAAGATTTTGATTCATAGTCTCGATCTTTCTTATCGGCTAGAATGGACTGGCGAACGGAAACTTCAAC
TCACACGGCATGGAAATGAGTTGGGATCTTTTCAAATATAAGCGTACTTTTGTGCAAACCAGTTGGCAAGGCCCTCAAGGAAACATCCTTGAACATTCAGACTAGGAAGT
CTCTTAAAAGTTAAAAACCATCATGAATTTCCTAGTTTCCATCCTCTTGCTTGCTTACCACTAGTTCAAGGCTTTCGGGCTGTGGTTCTGTATTTCCTGATTAAGTCGGC
CCACGCGCAACATGAAGAATTTAAAAGGCGTCTGTCTTCTTGTGGCCTTCCCAGGATATATCTTCAATTGTTGCTTCTTTGAGGGAGAAATGAAAGAAAAGAATCTGATA
TGCATTTTTCTGGTATGATCATGTTATCAATTCATCACTCTTAAAGATTTTCGATTTTTTCTCCTCATGTATTCCCAGTCTTCTCAAGATCGACTTTCTTCGAGTCTCCA
CGGGTAGTAATTGCTATTTTTGCATAGCTTTGGTTACAATATTGTATTTAATTTATATGTTTTAGCAGCTTGTTTATAAAAGTTGCATGTAATGTTGTCTTGTTTTTGTC
TGTGAAACCCAAACCTTATTATTTTAGAGAGGAAGTTACCATAGAGCTGTGTTGGGTAATCCATTCAATATGGAACTGATGTTGCTGCTTTATTTTTCCTTTCTACTTTT
TCTCCATTGGCTTACTTTTGGATTTGTATTATCAACGAATATGTTGAATGTTCATGTAGATTAAACAAAATGGAGCTAAACTCTAAGCACTGAAATATCTGAGTCAATTT
ATTGGAAAAAGAAAAACTGCAATTAAGGTAATTGTATATCTCATTTACCTATCTTATCATATAATTATCAATGAAAA

Protein sequence

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MVVIGICMVGETKPQLCSCSMHQSDICFSMGGILAQFFEDYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGSFQI

CmoCh04G007660 (gene) of Cucurbita moschata (Rifu) v1 genome