CuGenDBv2

Gene ID	CmoCh04G007750
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Transcription initiation factor IIE subunit beta
Genome location	Cmo_Chr04:3876449..3877597
RNA-Seq Expression	CmoCh04G007750
Synteny	CmoCh04G007750
Gene Ontology terms	GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process) GO:0005673 - transcription factor TFIIE complex (cellular component)
InterPro domains	IPR003166 - Transcription factor TFIIE beta subunit, DNA-binding domain IPR016656 - Transcription initiation factor TFIIE, beta subunit

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6577183.1 General transcription factor IIE subunit 2, partial [Cucurbita argyrosperma subsp. sororia]

5.2e-31

60.45

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Query:  LQEKLDRFKKQQERCQTTFTGIAASKST--------------------------------------PNWGSVKRVIDLLLETRQALTPLQINEACYVDIN
        LQEKLDRFK+QQERCQTT +GIAASK+T                                      P    +KRVIDLLLETRQA TP QINE+CYVDIN
Subjt:  LQEKLDRFKKQQERCQTTFTGIAASKST--------------------------------------PNWGSVKRVIDLLLETRQALTPLQINEACYVDIN

Query:  SNNAVFYSLRNNLKVHYDGRRFSYKSKHDLKDKN
        SN AVF SLRNN KVHYDGRRFSYKSKHDLKDKN
Subjt:  SNNAVFYSLRNNLKVHYDGRRFSYKSKHDLKDKN

KAG6600555.1 hypothetical protein SDJN03_05788, partial [Cucurbita argyrosperma subsp. sororia]

1.6e-56

84.67

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Query:  MYTAGYQTSTPDPTVVFIHGGRFCGILVTPFFFCGHLQEKLDRFKKQQERCQTTFTGIAASKSTPNW-----GSVKRVIDLLLETRQALTPLQINEACYV
        MYTAGYQTSTPDPTVVFIHGGRFCGILVTPFFFCGHLQEKLDRFKKQQERC+TT TGIAASKSTP +      S+ R       TRQALTPLQINEACYV
Subjt:  MYTAGYQTSTPDPTVVFIHGGRFCGILVTPFFFCGHLQEKLDRFKKQQERCQTTFTGIAASKSTPNW-----GSVKRVIDLLLETRQALTPLQINEACYV

Query:  DINSNNAVFYSLRNNLKVHYDGRRFSYKSKHDLKDKN
        DINSN AVF SLRNNLKVHYDGRRFSYKSKHDLKDKN
Subjt:  DINSNNAVFYSLRNNLKVHYDGRRFSYKSKHDLKDKN

KAG7031194.1 hypothetical protein SDJN02_05234, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.2e-53

84.09

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Query:  YQTSTPDPTVVFIHGGRFCGILVTPFFFCGHLQEKLDRFKKQQERCQTTFTGIAASKSTPNW-----GSVKRVIDLLLETRQALTPLQINEACYVDINSN
        YQTSTPDPTVVFIHGGRFCGILVTPFFFCGHLQEKLDRFKKQQERC+TT TGIAASKSTP +      S+ R       TRQALTPLQINEACYVDINSN
Subjt:  YQTSTPDPTVVFIHGGRFCGILVTPFFFCGHLQEKLDRFKKQQERCQTTFTGIAASKSTPNW-----GSVKRVIDLLLETRQALTPLQINEACYVDINSN

Query:  NAVFYSLRNNLKVHYDGRRFSYKSKHDLKDKN
         AVF SLRNNLKVHYDGRRFSYKSKHDLKDKN
Subjt:  NAVFYSLRNNLKVHYDGRRFSYKSKHDLKDKN

XP_022931511.1 general transcription factor IIE subunit 2-like [Cucurbita moschata]

5.2e-31

60.45

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Query:  LQEKLDRFKKQQERCQTTFTGIAASKST--------------------------------------PNWGSVKRVIDLLLETRQALTPLQINEACYVDIN
        LQEKLDRFK+QQERCQTT +GIAASK+T                                      P    +KRVIDLLLETRQA TP QINE+CYVDIN
Subjt:  LQEKLDRFKKQQERCQTTFTGIAASKST--------------------------------------PNWGSVKRVIDLLLETRQALTPLQINEACYVDIN

Query:  SNNAVFYSLRNNLKVHYDGRRFSYKSKHDLKDKN
        SN AVF SLRNN KVHYDGRRFSYKSKHDLKDKN
Subjt:  SNNAVFYSLRNNLKVHYDGRRFSYKSKHDLKDKN

XP_022984812.1 general transcription factor IIE subunit 2-like [Cucurbita maxima]

2.3e-31

61.19

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Query:  LQEKLDRFKKQQERCQTTFTGIAASKST--------------------------------------PNWGSVKRVIDLLLETRQALTPLQINEACYVDIN
        LQEKLDRFK+QQERCQTT +GIAASK+T                                      P    +KRVIDLLLETRQA TP QINEACYVDIN
Subjt:  LQEKLDRFKKQQERCQTTFTGIAASKST--------------------------------------PNWGSVKRVIDLLLETRQALTPLQINEACYVDIN

Query:  SNNAVFYSLRNNLKVHYDGRRFSYKSKHDLKDKN
        SN AVF SLRNN KVHYDGRRFSYKSKHDLKDKN
Subjt:  SNNAVFYSLRNNLKVHYDGRRFSYKSKHDLKDKN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KWU5 Transcription initiation factor IIE subunit beta

2.8e-30

58.39

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Query:  LQEKLDRFKKQQERCQTTFTGIAASKS-----------------------------------------TPNWGSVKRVIDLLLETRQALTPLQINEACYV
        LQE+LDRFKKQQERCQ+T +GIAASKS                                         +P    +KRVIDLLLETRQA TP QINEACYV
Subjt:  LQEKLDRFKKQQERCQTTFTGIAASKS-----------------------------------------TPNWGSVKRVIDLLLETRQALTPLQINEACYV

Query:  DINSNNAVFYSLRNNLKVHYDGRRFSYKSKHDLKDKN
        DINSN AV+ SLRNN KVHYDGRRFSYKSKHDLKDKN
Subjt:  DINSNNAVFYSLRNNLKVHYDGRRFSYKSKHDLKDKN

A0A1S3BS95 Transcription initiation factor IIE subunit beta

2.8e-30

58.39

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Query:  LQEKLDRFKKQQERCQTTFTGIAASKS-----------------------------------------TPNWGSVKRVIDLLLETRQALTPLQINEACYV
        LQE+LDRFKKQQERCQ+T +GIAASKS                                         +P    +KRVIDLLLETRQA TP QINEACYV
Subjt:  LQEKLDRFKKQQERCQTTFTGIAASKS-----------------------------------------TPNWGSVKRVIDLLLETRQALTPLQINEACYV

Query:  DINSNNAVFYSLRNNLKVHYDGRRFSYKSKHDLKDKN
        DINSN AV+ SLRNN KVHYDGRRFSYKSKHDLKDKN
Subjt:  DINSNNAVFYSLRNNLKVHYDGRRFSYKSKHDLKDKN

A0A5A7TNR4 Transcription initiation factor IIE subunit beta

2.8e-30

58.39

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Query:  LQEKLDRFKKQQERCQTTFTGIAASKS-----------------------------------------TPNWGSVKRVIDLLLETRQALTPLQINEACYV
        LQE+LDRFKKQQERCQ+T +GIAASKS                                         +P    +KRVIDLLLETRQA TP QINEACYV
Subjt:  LQEKLDRFKKQQERCQTTFTGIAASKS-----------------------------------------TPNWGSVKRVIDLLLETRQALTPLQINEACYV

Query:  DINSNNAVFYSLRNNLKVHYDGRRFSYKSKHDLKDKN
        DINSN AV+ SLRNN KVHYDGRRFSYKSKHDLKDKN
Subjt:  DINSNNAVFYSLRNNLKVHYDGRRFSYKSKHDLKDKN

A0A6J1ETU7 Transcription initiation factor IIE subunit beta

2.5e-31

60.45

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Query:  LQEKLDRFKKQQERCQTTFTGIAASKST--------------------------------------PNWGSVKRVIDLLLETRQALTPLQINEACYVDIN
        LQEKLDRFK+QQERCQTT +GIAASK+T                                      P    +KRVIDLLLETRQA TP QINE+CYVDIN
Subjt:  LQEKLDRFKKQQERCQTTFTGIAASKST--------------------------------------PNWGSVKRVIDLLLETRQALTPLQINEACYVDIN

Query:  SNNAVFYSLRNNLKVHYDGRRFSYKSKHDLKDKN
        SN AVF SLRNN KVHYDGRRFSYKSKHDLKDKN
Subjt:  SNNAVFYSLRNNLKVHYDGRRFSYKSKHDLKDKN

A0A6J1J372 Transcription initiation factor IIE subunit beta

1.1e-31

61.19

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Query:  LQEKLDRFKKQQERCQTTFTGIAASKST--------------------------------------PNWGSVKRVIDLLLETRQALTPLQINEACYVDIN
        LQEKLDRFK+QQERCQTT +GIAASK+T                                      P    +KRVIDLLLETRQA TP QINEACYVDIN
Subjt:  LQEKLDRFKKQQERCQTTFTGIAASKST--------------------------------------PNWGSVKRVIDLLLETRQALTPLQINEACYVDIN

Query:  SNNAVFYSLRNNLKVHYDGRRFSYKSKHDLKDKN
        SN AVF SLRNN KVHYDGRRFSYKSKHDLKDKN
Subjt:  SNNAVFYSLRNNLKVHYDGRRFSYKSKHDLKDKN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G20330.1 Transcription initiation factor TFIIE, beta subunit

2.8e-22

42.75

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Query:  LQEKLDRFKKQQERCQTTFTGIAAS------------------------------------------KSTPNWGSVKRVIDLLLETRQALTPLQINEACY
        L+E+LD+F KQQ +CQ+T + IA+S                                          +  P    +KRVIDLL E R ALTP QINE C+
Subjt:  LQEKLDRFKKQQERCQTTFTGIAAS------------------------------------------KSTPNWGSVKRVIDLLLETRQALTPLQINEACY

Query:  VDINSNNAVFYSLRNNLKVHYDGRRFSYKSKHDLKDKN
        VD+++N AVF SLR N K HYDGRRFSYK+ HD+ DKN
Subjt:  VDINSNNAVFYSLRNNLKVHYDGRRFSYKSKHDLKDKN

AT4G21010.1 Transcription initiation factor TFIIE, beta subunit

3.6e-22

44.36

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Query:  LQEKLDRFKKQQERCQTTFTGIAASKST--------------PN------------------------WGSVKRVIDLLLETRQALTPLQINEACYVDIN
        L+E+LD+F KQQE+CQ+T + I++S++               PN                           +K VIDLL +TR A T  QINEACYVD++
Subjt:  LQEKLDRFKKQQERCQTTFTGIAASKST--------------PN------------------------WGSVKRVIDLLLETRQALTPLQINEACYVDIN

Query:  SNNAVFYSLRNNLKVHYDGRRFSYKSKHDLKDK
        +N AVF SLR N KVHYDGRRFSYK+ H++KDK
Subjt:  SNNAVFYSLRNNLKVHYDGRRFSYKSKHDLKDK

Sequences

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CDS sequence

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ATGTATACTGCAGGTTATCAAACGTCGACCCCCGACCCCACCGTCGTCTTTATCCACGGCGGTCGATTTTGTGGTATTCTAGTTACTCCCTTCTTCTTTTGTGGGCATTT
GCAAGAAAAACTAGATAGGTTTAAGAAACAGCAAGAGAGGTGTCAGACTACCTTCACTGGCATTGCTGCATCCAAGTCTACTCCTAATTGGGGCTCAGTCAAGAGGGTTA
TCGACCTGCTGCTGGAGACAAGGCAAGCCCTTACCCCACTGCAAATCAATGAAGCATGTTATGTTGATATTAATTCAAACAATGCCGTTTTTTATAGTCTACGGAATAAC
CTAAAGGTGCACTATGATGGGAGGCGTTTCTCATACAAGTCCAAGCACGATCTGAAGGATAAGAATTAA

mRNA sequence

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Protein sequence

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MYTAGYQTSTPDPTVVFIHGGRFCGILVTPFFFCGHLQEKLDRFKKQQERCQTTFTGIAASKSTPNWGSVKRVIDLLLETRQALTPLQINEACYVDINSNNAVFYSLRNN
LKVHYDGRRFSYKSKHDLKDKN

CmoCh04G007750 (gene) of Cucurbita moschata (Rifu) v1 genome