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CmoCh04G007830 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G007830
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionshort-chain dehydrogenase TIC 32, chloroplastic-like
Genome locationCmo_Chr04:3927134..3929658
RNA-Seq ExpressionCmoCh04G007830
SyntenyCmoCh04G007830
Gene Ontology termsGO:0016491 - oxidoreductase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146522.1 short-chain dehydrogenase TIC 32, chloroplastic [Cucumis sativus]1.3e-1071.7Show/hide
Query:  MAKVVLEDKEDDEYKMGAATQCYVALNPQVKGVSGEYFVDNNIAGPTNHAKNM
        +AK VL++      + GAATQCYVALNPQVKGVSGEYFVD+NIA PTNHAK+M
Subjt:  MAKVVLEDKEDDEYKMGAATQCYVALNPQVKGVSGEYFVDNNIAGPTNHAKNM

XP_022931508.1 short-chain dehydrogenase TIC 32, chloroplastic-like [Cucurbita moschata]1.8e-1087.18Show/hide
Query:  KMGAATQCYVALNPQVKGVSGEYFVDNNIAGPTNHAKNM
        + GAATQCYVALNPQVKGVSGEYFVD+NIA PTNHAK+M
Subjt:  KMGAATQCYVALNPQVKGVSGEYFVDNNIAGPTNHAKNM

XP_022984715.1 short-chain dehydrogenase TIC 32, chloroplastic-like [Cucurbita maxima]2.3e-1087.18Show/hide
Query:  KMGAATQCYVALNPQVKGVSGEYFVDNNIAGPTNHAKNM
        + GAATQCYVALNPQVKGVSGEYFVD+NIA PTNHAK+M
Subjt:  KMGAATQCYVALNPQVKGVSGEYFVDNNIAGPTNHAKNM

XP_023552364.1 short-chain dehydrogenase TIC 32, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo]2.3e-1087.18Show/hide
Query:  KMGAATQCYVALNPQVKGVSGEYFVDNNIAGPTNHAKNM
        + GAATQCYVALNPQVKGVSGEYFVD+NIA PTNHAK+M
Subjt:  KMGAATQCYVALNPQVKGVSGEYFVDNNIAGPTNHAKNM

XP_038884091.1 short-chain dehydrogenase TIC 32, chloroplastic-like [Benincasa hispida]1.3e-1071.7Show/hide
Query:  MAKVVLEDKEDDEYKMGAATQCYVALNPQVKGVSGEYFVDNNIAGPTNHAKNM
        +AK VL++      + GAATQCYVALNPQVKGVSGEYFVD+NIA PTNHAK+M
Subjt:  MAKVVLEDKEDDEYKMGAATQCYVALNPQVKGVSGEYFVDNNIAGPTNHAKNM

TrEMBL top hitse value%identityAlignment
A0A0A0KUV5 Short-chain dehydrogenase6.5e-1171.7Show/hide
Query:  MAKVVLEDKEDDEYKMGAATQCYVALNPQVKGVSGEYFVDNNIAGPTNHAKNM
        +AK VL++      + GAATQCYVALNPQVKGVSGEYFVD+NIA PTNHAK+M
Subjt:  MAKVVLEDKEDDEYKMGAATQCYVALNPQVKGVSGEYFVDNNIAGPTNHAKNM

A0A5A7TNQ8 Short-chain dehydrogenase TIC 323.2e-1069.81Show/hide
Query:  MAKVVLEDKEDDEYKMGAATQCYVALNPQVKGVSGEYFVDNNIAGPTNHAKNM
        +AK VL++      + GAATQCYVALNPQVKGVSGEYFVD+NIA PT HAK+M
Subjt:  MAKVVLEDKEDDEYKMGAATQCYVALNPQVKGVSGEYFVDNNIAGPTNHAKNM

A0A5D3D084 Short-chain dehydrogenase TIC 323.2e-1069.81Show/hide
Query:  MAKVVLEDKEDDEYKMGAATQCYVALNPQVKGVSGEYFVDNNIAGPTNHAKNM
        +AK VL++      + GAATQCYVALNPQVKGVSGEYFVD+NIA PT HAK+M
Subjt:  MAKVVLEDKEDDEYKMGAATQCYVALNPQVKGVSGEYFVDNNIAGPTNHAKNM

A0A6J1EYV4 short-chain dehydrogenase TIC 32, chloroplastic-like8.5e-1187.18Show/hide
Query:  KMGAATQCYVALNPQVKGVSGEYFVDNNIAGPTNHAKNM
        + GAATQCYVALNPQVKGVSGEYFVD+NIA PTNHAK+M
Subjt:  KMGAATQCYVALNPQVKGVSGEYFVDNNIAGPTNHAKNM

A0A6J1J9D0 short-chain dehydrogenase TIC 32, chloroplastic-like1.1e-1087.18Show/hide
Query:  KMGAATQCYVALNPQVKGVSGEYFVDNNIAGPTNHAKNM
        + GAATQCYVALNPQVKGVSGEYFVD+NIA PTNHAK+M
Subjt:  KMGAATQCYVALNPQVKGVSGEYFVDNNIAGPTNHAKNM

SwissProt top hitse value%identityAlignment
A0A078IS66 Short-chain dehydrogenase TIC 32 A, chloroplastic8.8e-0558.82Show/hide
Query:  GAATQCYVALNPQVKGVSGEYFVDNNIAGPTNHA
        GAAT CYVAL+P +K V+G+YF D N+  P+N A
Subjt:  GAATQCYVALNPQVKGVSGEYFVDNNIAGPTNHA

A0A078ISJ6 Short-chain dehydrogenase TIC 32 B, chloroplastic1.4e-0561.76Show/hide
Query:  GAATQCYVALNPQVKGVSGEYFVDNNIAGPTNHA
        GAAT CYVAL+P +KGV+G+YF D N+  P+N A
Subjt:  GAATQCYVALNPQVKGVSGEYFVDNNIAGPTNHA

A2RVM0 Short-chain dehydrogenase TIC 32, chloroplastic5.5e-0783.33Show/hide
Query:  GAATQCYVALNPQVKGVSGEYFVDNNIAGP
        GAAT CYVALNPQV GVSGEYF D+NIA P
Subjt:  GAATQCYVALNPQVKGVSGEYFVDNNIAGP

Q6RVV4 Short-chain dehydrogenase TIC 32, chloroplastic1.9e-0764.1Show/hide
Query:  KMGAATQCYVALNPQVKGVSGEYFVDNNIAGPTNHAKNM
        + GAAT CYVAL+PQVKGVSGEYF D+N+   T H K++
Subjt:  KMGAATQCYVALNPQVKGVSGEYFVDNNIAGPTNHAKNM

Arabidopsis top hitse value%identityAlignment
AT4G11410.1 NAD(P)-binding Rossmann-fold superfamily protein5.1e-0863.89Show/hide
Query:  GAATQCYVALNPQVKGVSGEYFVDNNIAGPTNHAKN
        GAAT CY AL+PQ KGVSGEY +DNNI+ P +  K+
Subjt:  GAATQCYVALNPQVKGVSGEYFVDNNIAGPTNHAKN

AT4G23420.1 NAD(P)-binding Rossmann-fold superfamily protein6.7e-0869.44Show/hide
Query:  GAATQCYVALNPQVKGVSGEYFVDNNIAGPTNHAKN
        GAAT CYVALNPQV GV+GEYF D+NIA P    K+
Subjt:  GAATQCYVALNPQVKGVSGEYFVDNNIAGPTNHAKN

AT4G23430.1 NAD(P)-binding Rossmann-fold superfamily protein3.9e-0883.33Show/hide
Query:  GAATQCYVALNPQVKGVSGEYFVDNNIAGP
        GAAT CYVALNPQV GVSGEYF D+NIA P
Subjt:  GAATQCYVALNPQVKGVSGEYFVDNNIAGP

AT4G23430.2 NAD(P)-binding Rossmann-fold superfamily protein3.9e-0883.33Show/hide
Query:  GAATQCYVALNPQVKGVSGEYFVDNNIAGP
        GAAT CYVALNPQV GVSGEYF D+NIA P
Subjt:  GAATQCYVALNPQVKGVSGEYFVDNNIAGP

AT4G23430.3 NAD(P)-binding Rossmann-fold superfamily protein3.9e-0883.33Show/hide
Query:  GAATQCYVALNPQVKGVSGEYFVDNNIAGP
        GAAT CYVALNPQV GVSGEYF D+NIA P
Subjt:  GAATQCYVALNPQVKGVSGEYFVDNNIAGP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAAGGTCGTGCTAGAGGACAAGGAGGACGATGAGTACAAGATGGGAGCGGCAACTCAGTGTTATGTGGCGTTGAACCCCCAAGTAAAAGGGGTAAGTGGAGAGTA
TTTTGTTGATAATAATATTGCCGGCCCAACCAATCATGCCAAGAATATGGCCCATTGTCGCCTACAGGTTTCTAATTATCATACTATTCAGACCTGCCTGTGTTTAGGAG
GTCAGATTGTTGAAAAGAATATGGCTTCTGGTTTTACTCTTTTCATGATTTGTCCTCTTTTTTACCTTCAAAGCTCACCAGTCCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGAAGGTCGTGCTAGAGGACAAGGAGGACGATGAGTACAAGATGGGAGCGGCAACTCAGTGTTATGTGGCGTTGAACCCCCAAGTAAAAGGGGTAAGTGGAGAGTA
TTTTGTTGATAATAATATTGCCGGCCCAACCAATCATGCCAAGAATATGGCCCATTGTCGCCTACAGGTTTCTAATTATCATACTATTCAGACCTGCCTGTGTTTAGGAG
GTCAGATTGTTGAAAAGAATATGGCTTCTGGTTTTACTCTTTTCATGATTTGTCCTCTTTTTTACCTTCAAAGCTCACCAGTCCTTTAG
Protein sequenceShow/hide protein sequence
MAKVVLEDKEDDEYKMGAATQCYVALNPQVKGVSGEYFVDNNIAGPTNHAKNMAHCRLQVSNYHTIQTCLCLGGQIVEKNMASGFTLFMICPLFYLQSSPVL