CuGenDBv2

Gene ID	CmoCh04G008810
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	50S ribosomal protein L23
Genome location	Cmo_Chr04:4429273..4433839
RNA-Seq Expression	CmoCh04G008810
Synteny	CmoCh04G008810
Gene Ontology terms	GO:0010584 - pollen exine formation (biological process) GO:0015789 - UDP-N-acetylgalactosamine transmembrane transport (biological process) GO:0032543 - mitochondrial translation (biological process) GO:1902183 - regulation of shoot apical meristem development (biological process) GO:1903070 - negative regulation of ER-associated ubiquitin-dependent protein catabolic process (biological process) GO:1903857 - negative regulation of cytokinin dehydrogenase activity (biological process) GO:1990569 - UDP-N-acetylglucosamine transmembrane transport (biological process) GO:0000139 - Golgi membrane (cellular component) GO:0005762 - mitochondrial large ribosomal subunit (cellular component) GO:0005783 - endoplasmic reticulum (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005463 - UDP-N-acetylgalactosamine transmembrane transporter activity (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0003729 - mRNA binding (molecular function)
InterPro domains	IPR013025 - Ribosomal protein L25/L23 IPR012678 - Ribosomal protein L23/L15e core domain superfamily IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

TYK15876.1 Nucleotide-binding, alpha-beta plait [Cucumis melo var. makuwa]

3.1e-82

94.19

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Query:  MVSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        M SRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKVRTLNM+GKKKKRGG+LIAKPDYKKAYVTLRNPLSIS D+YP
Subjt:  MVSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRI-GGAEAVEPSTKFPWSSMRS
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKE VG+KTYKGFADRGRRRI GGAE VEPSTKFPWSSMRS
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRI-GGAEAVEPSTKFPWSSMRS

XP_008455593.1 PREDICTED: uncharacterized protein LOC103495731 isoform X1 [Cucumis melo]

3.1e-82

94.19

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Query:  MVSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        M SRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKVRTLNM+GKKKKRGG+LIAKPDYKKAYVTLRNPLSIS D+YP
Subjt:  MVSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRI-GGAEAVEPSTKFPWSSMRS
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKE VG+KTYKGFADRGRRRI GGAE VEPSTKFPWSSMRS
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRI-GGAEAVEPSTKFPWSSMRS

XP_022943267.1 uncharacterized protein LOC111448049 [Cucurbita moschata]

5.0e-88

100

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Query:  MVSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        MVSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
Subjt:  MVSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRS
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRS
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRS

XP_023531609.1 uncharacterized protein LOC111793793 [Cucurbita pepo subsp. pepo]

3.2e-87

99.42

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Query:  MVSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        M SRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
Subjt:  MVSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRS
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRS
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRS

XP_038905477.1 uncharacterized protein LOC120091488 [Benincasa hispida]

2.2e-83

95.91

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Query:  MVSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        M SRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNM+GKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
Subjt:  MVSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRS
        IRIIEEDK+NMNKQSKSSIVEEGEAKRHWLHEKE VGLKTYKGFADRGRR IGGAE VE STKFPWSSMRS
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L0J2 Uncharacterized protein

2.6e-82

93.6

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Query:  MVSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        M SRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKV+TLNM+GKKKKRGG+LIAKPDYKKAYVTLRNPLSISPD+YP
Subjt:  MVSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRI-GGAEAVEPSTKFPWSSMRS
        IRIIEEDKRNMNKQSKSSIVEEGEAK+HWLHEKE VG+KTYKGFADRGRRR  GGAE VEPSTKFPWSSMRS
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRI-GGAEAVEPSTKFPWSSMRS

A0A1S3C191 uncharacterized protein LOC103495731 isoform X1

1.5e-82

94.19

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Query:  MVSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        M SRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKVRTLNM+GKKKKRGG+LIAKPDYKKAYVTLRNPLSIS D+YP
Subjt:  MVSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRI-GGAEAVEPSTKFPWSSMRS
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKE VG+KTYKGFADRGRRRI GGAE VEPSTKFPWSSMRS
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRI-GGAEAVEPSTKFPWSSMRS

A0A1S4E0P8 uncharacterized protein LOC103495731 isoform X2

1.5e-82

94.19

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Query:  MVSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        M SRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKVRTLNM+GKKKKRGG+LIAKPDYKKAYVTLRNPLSIS D+YP
Subjt:  MVSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRI-GGAEAVEPSTKFPWSSMRS
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKE VG+KTYKGFADRGRRRI GGAE VEPSTKFPWSSMRS
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRI-GGAEAVEPSTKFPWSSMRS

A0A5D3CZJ7 Nucleotide-binding, alpha-beta plait

1.5e-82

94.19

Show/hide

Query:  MVSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        M SRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKVRTLNM+GKKKKRGG+LIAKPDYKKAYVTLRNPLSIS D+YP
Subjt:  MVSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRI-GGAEAVEPSTKFPWSSMRS
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKE VG+KTYKGFADRGRRRI GGAE VEPSTKFPWSSMRS
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRI-GGAEAVEPSTKFPWSSMRS

A0A6J1FSK6 uncharacterized protein LOC111448049

2.4e-88

100

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Query:  MVSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        MVSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
Subjt:  MVSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRS
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRS
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRS

SwissProt top hits

e value

%identity

Alignment

A0KF23 50S ribosomal protein L23

3.8e-06

45.76

Show/hide

Query:  IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLR
        I  K    A+K E+K  +  L+  EV+ VRTLNM GK K+ G  +  + D+KKAYVTL+
Subjt:  IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLR

A4ST04 50S ribosomal protein L23

4.9e-06

45.76

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Query:  IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLR
        I  K    A+K E+K  +  L+  EV+ VRTLNM GK K+ G  +  + D+KKAYVTL+
Subjt:  IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLR

Q0ABH3 50S ribosomal protein L23

4.9e-06

45.76

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Query:  EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTL
        E+  K    A K EI++ +E L+  +V  VRT+ M GK+K+ G L   +PD+KKAYVTL
Subjt:  EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTL

Q0I161 50S ribosomal protein L23

2.9e-06

42.47

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Query:  TNITE----IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSI
        TN TE    I  K    A+K+EI   +E L+  +VD VRT+ + GK K+RG  +  + D+KKAYVTL+   S+
Subjt:  TNITE----IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSI

Q605B4 50S ribosomal protein L23

2.2e-06

41.67

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Query:  EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLR
        +   +  P+ASK++IK  +E ++G +VD VR LN+ GK K+ G  +  + D+KKAYV L+
Subjt:  EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLR

Arabidopsis top hits

e value

%identity

Alignment

AT4G39880.1 Ribosomal protein L23/L15e family protein

9.4e-53

65.71

Show/hide

Query:  MVSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        M SRLG RVVHFANLPIKLLMP   TNI E ALKTIPSASKIEIKRVLESLYGF+V+KV TLNMDGKKKKRGGLLIAK DYKKAYVTLR+PLSIS D++P
Subjt:  MVSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTY-KGFADRGRRRIG----GAEAVEPSTKFPWSSMR
        ++ IEED+++  K S S + EE + K HWL  KE   +  Y KG   RG  R      G  A   + KFPWS+MR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTY-KGFADRGRRRIG----GAEAVEPSTKFPWSSMR

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGTAAGCAGACTCGGAAGAAGAGTTGTTCACTTCGCAAATCTTCCAATCAAACTTCTTATGCCAACTTCCTTCACCAACATCACTGAAATTGCTCTCAAAACCATTCC
TTCTGCTTCCAAAATCGAAATCAAGCGCGTTCTCGAGAGCCTCTACGGCTTTGAGGTCGATAAAGTTCGAACTCTCAACATGGATGGTAAGAAGAAGAAGCGCGGAGGGC
TTTTGATTGCAAAGCCTGATTACAAGAAGGCCTATGTTACTCTCAGGAATCCCTTGTCAATTTCTCCGGACGTCTACCCCATCCGGATTATAGAGGAGGACAAGAGGAAT
ATGAATAAACAGTCTAAGTCCAGCATTGTTGAAGAGGGAGAGGCCAAGCGGCATTGGCTGCATGAAAAGGAAGCAGTGGGACTCAAAACTTACAAGGGTTTTGCTGATAG
AGGCCGCCGACGAATTGGCGGCGCTGAAGCTGTTGAACCATCAACTAAGTTTCCTTGGAGTAGCATGAGGTCCGAGGATTCTCTTATTCCAAGGCTTCAGGTCATTGATA
ATCTATCTCTTAAGCTCACTCGAGAACTAAGCCTGCTGGATCTACGCTGGGCAGGTTCATCTCCATCAACTCTTCTCCGAGTAGTCACGTTGCAACCCTGCCATCTGTGT
CTTCACGCTCTGAAGTTCTTCCTTGAGGGTTTCCATCCTCAACTGAATTATCACTACTGGGTGCTTTCTCCTTCTCTTGCATGGCTGACCTCATCTTCACTTGCTCTGAA
AACAGAACCTGCATATTCACTCAGAAGTATTAGCCTTCTCCGATCATGCTCAGATAATAAAGGACGGGGACTGTGGTGGGAGATTGATATTATGAGGGAGATGAGGAATG
TTGGTAATGATATGACCATACTTATTTCATCTACGTCTACAATGACTCAACCAATGGATGTATGA

mRNA sequence

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Protein sequence

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MVSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRN
MNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRSEDSLIPRLQVIDNLSLKLTRELSLLDLRWAGSSPSTLLRVVTLQPCHLC
LHALKFFLEGFHPQLNYHYWVLSPSLAWLTSSSLALKTEPAYSLRSISLLRSCSDNKGRGLWWEIDIMREMRNVGNDMTILISSTSTMTQPMDV

CmoCh04G008810 (gene) of Cucurbita moschata (Rifu) v1 genome