CuGenDBv2

Gene ID	CmoCh04G009100
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	cytochrome c oxidase subunit 6a, mitochondrial-like
Genome location	Cmo_Chr04:4577915..4580271
RNA-Seq Expression	CmoCh04G009100
Synteny	CmoCh04G009100
Gene Ontology terms	GO:0006123 - mitochondrial electron transport, cytochrome c to oxygen (biological process) GO:0050790 - regulation of catalytic activity (biological process) GO:1902600 - proton transmembrane transport (biological process) GO:0005751 - mitochondrial respiratory chain complex IV (cellular component) GO:0004129 - cytochrome-c oxidase activity (molecular function) GO:0030234 - enzyme regulator activity (molecular function)
InterPro domains	IPR001349 - Cytochrome c oxidase, subunit VIa IPR036418 - Cytochrome c oxidase, subunit VIa superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022929363.1 cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita moschata]

2.5e-46

93.88

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Query:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH
        MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDA ETAKWEKITYAGI +C+ LAFYNLSKGHPH+EEPPAYPYLHIRNKEFPWGPDGLFEVKHH
Subjt:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH

XP_022941809.1 cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita moschata]

1.1e-49

100

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Query:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH
        MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH
Subjt:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH

XP_023001309.1 cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita maxima]

5.4e-49

98.98

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Query:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH
        MAMATIRSNLLRAA RGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH
Subjt:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH

XP_023545456.1 cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita pepo subsp. pepo]

5.4e-49

97.96

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Query:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH
        M+MATIRSNLLRAAFRGASRNSAQPKRGF+SSAHDDALETAKWEKITYAGIAACTTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH
Subjt:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH

XP_038905594.1 cytochrome c oxidase subunit 6a, mitochondrial [Benincasa hispida]

1.5e-46

94.9

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Query:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH
        MAMA+IRSNLLRAA RGASRNSAQPKRGFASSAHDDA ETAKWEKITYAGIA CT LAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH
Subjt:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH

TrEMBL top hits

e value

%identity

Alignment

A0A6J1C3V4 cytochrome c oxidase subunit 6a, mitochondrial

2.1e-46

93.88

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Query:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH
        MAMATIRSNLLRAAFRGAS+NSAQPKRGFASSAHDD  ETAKWEKITYAGI ACTTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFE K H
Subjt:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH

A0A6J1ERW3 cytochrome c oxidase subunit 6a, mitochondrial-like

1.2e-46

93.88

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Query:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH
        MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDA ETAKWEKITYAGI +C+ LAFYNLSKGHPH+EEPPAYPYLHIRNKEFPWGPDGLFEVKHH
Subjt:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH

A0A6J1FPI8 cytochrome c oxidase subunit 6a, mitochondrial-like

5.2e-50

100

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Query:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH
        MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH
Subjt:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH

A0A6J1J8L1 cytochrome c oxidase subunit 6a, mitochondrial-like

2.3e-45

91.84

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Query:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH
        MAMA IRSNLLRAAFRGASRN AQPKRGFASSAHDDA ETAKWEKITYAGI +C+ LAFYNLSKGHPH+EEPPAYPYLHIRNKEFPWGPDGLFEVKHH
Subjt:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH

A0A6J1KMD3 cytochrome c oxidase subunit 6a, mitochondrial-like

2.6e-49

98.98

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Query:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH
        MAMATIRSNLLRAA RGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH
Subjt:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH

SwissProt top hits

e value

%identity

Alignment

Q9T070 Cytochrome c oxidase subunit 6a, mitochondrial

1.9e-33

70.71

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Query:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSA-HDDALETAKWEKITYAGIAACTTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH
        MA A +RS L RA  R A + S  PKR F+SSA HDDA E AKWEKITY GIA+CT LA Y LSKGH H E+PPAYP++HIRNKEFPWGPDGLFEVKH+
Subjt:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSA-HDDALETAKWEKITYAGIAACTTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH

Arabidopsis top hits

e value

%identity

Alignment

AT4G37830.1 cytochrome c oxidase-related

1.4e-34

70.71

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Query:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSA-HDDALETAKWEKITYAGIAACTTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH
        MA A +RS L RA  R A + S  PKR F+SSA HDDA E AKWEKITY GIA+CT LA Y LSKGH H E+PPAYP++HIRNKEFPWGPDGLFEVKH+
Subjt:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSA-HDDALETAKWEKITYAGIAACTTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH

AT4G37830.2 cytochrome c oxidase-related

2.3e-26

62.63

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Query:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSA-HDDALETAKWEKITYAGIAACTTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH
        MA A +RS L RA  R A + S  PKR F+SSA HDDA E AKWEKITY GIA+CT LA Y LSKGH H E+PP          EFPWGPDGLFEVKH+
Subjt:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSA-HDDALETAKWEKITYAGIAACTTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH

Sequences

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CDS sequence

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ATGGCAATGGCGACGATCCGATCCAATCTTCTTCGCGCTGCCTTCCGCGGTGCCTCTCGGAACTCCGCTCAGCCTAAACGCGGCTTTGCTTCCTCTGCTCACGACGATGC
TCTTGAAACGGCAAAATGGGAGAAGATTACTTATGCAGGCATTGCAGCCTGCACCACTTTAGCATTCTATAATCTATCAAAGGGCCACCCCCACCATGAAGAGCCCCCTG
CATACCCATATTTGCACATACGCAATAAGGAGTTCCCATGGGGTCCCGATGGTCTCTTTGAGGTGAAACATCACTGA

mRNA sequence

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CGCACGTGCCGAGATCACACGTTTGGGTAGTTTTGGTGAAAGGGCTCTCGATCGAGATTGCAAGGGTACGGTCATTTCAATTATAACTCGGGCATCGGCGATTTGTTAGA
GAAAGAGAGAGTCAAAAGAGAATGGCAATGGCGACGATCCGATCCAATCTTCTTCGCGCTGCCTTCCGCGGTGCCTCTCGGAACTCCGCTCAGCCTAAACGCGGCTTTGC
TTCCTCTGCTCACGACGATGCTCTTGAAACGGCAAAATGGGAGAAGATTACTTATGCAGGCATTGCAGCCTGCACCACTTTAGCATTCTATAATCTATCAAAGGGCCACC
CCCACCATGAAGAGCCCCCTGCATACCCATATTTGCACATACGCAATAAGGAGTTCCCATGGGGTCCCGATGGTCTCTTTGAGGTGAAACATCACTGAGGACTATTTTGG
TTCAAGGGGACATCGAGCATGGTAATTCTACTTCTCATTTGGTTCATATCAGAAAGACTTCGTTGACCCGTTTGGTTGGATTTTTCTTTTTAATGATGCGTGGGCCAT

Protein sequence

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MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH

CmoCh04G009100 (gene) of Cucurbita moschata (Rifu) v1 genome