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CmoCh04G009300 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G009300
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionVery-long-chain (3R)-3-hydroxyacyl-CoA dehydratase
Genome locationCmo_Chr04:4680510..4681035
RNA-Seq ExpressionCmoCh04G009300
SyntenyCmoCh04G009300
Gene Ontology termsGO:0006629 - lipid metabolic process (biological process)
GO:0016829 - lyase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600692.1 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2, partial [Cucurbita argyrosperma subsp. sororia]6.0e-0743.69Show/hide
Query:  YSFYGMNEEFGFAPSLLLWLRY--------------------------------------W-------------LSWSTIGSPHMYRYMLVQRSKALSKS
        YSFYGM E FGFAPSLLLWLRY                                      W             L+    GSPHMYRYMLVQRSKALSKS
Subjt:  YSFYGMNEEFGFAPSLLLWLRY--------------------------------------W-------------LSWSTIGSPHMYRYMLVQRSKALSKS

Query:  KKE
        KKE
Subjt:  KKE

XP_022942201.1 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like isoform X1 [Cucurbita moschata]6.0e-0743.69Show/hide
Query:  YSFYGMNEEFGFAPSLLLWLRY--------------------------------------W-------------LSWSTIGSPHMYRYMLVQRSKALSKS
        YSFYGM E FGFAPSLLLWLRY                                      W             L+    GSPHMYRYMLVQRSKALSKS
Subjt:  YSFYGMNEEFGFAPSLLLWLRY--------------------------------------W-------------LSWSTIGSPHMYRYMLVQRSKALSKS

Query:  KKE
        KKE
Subjt:  KKE

XP_022942204.1 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like isoform X2 [Cucurbita moschata]6.0e-0743.69Show/hide
Query:  YSFYGMNEEFGFAPSLLLWLRY--------------------------------------W-------------LSWSTIGSPHMYRYMLVQRSKALSKS
        YSFYGM E FGFAPSLLLWLRY                                      W             L+    GSPHMYRYMLVQRSKALSKS
Subjt:  YSFYGMNEEFGFAPSLLLWLRY--------------------------------------W-------------LSWSTIGSPHMYRYMLVQRSKALSKS

Query:  KKE
        KKE
Subjt:  KKE

XP_022942935.1 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like isoform X2 [Cucurbita moschata]6.0e-0743.69Show/hide
Query:  YSFYGMNEEFGFAPSLLLWLRY--------------------------------------W-------------LSWSTIGSPHMYRYMLVQRSKALSKS
        YSFYGM E FGFAPSLLLWLRY                                      W             L+    GSPHMYRYMLVQRSKALSKS
Subjt:  YSFYGMNEEFGFAPSLLLWLRY--------------------------------------W-------------LSWSTIGSPHMYRYMLVQRSKALSKS

Query:  KKE
        KKE
Subjt:  KKE

XP_022975511.1 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A isoform X1 [Cucurbita maxima]6.0e-0743.69Show/hide
Query:  YSFYGMNEEFGFAPSLLLWLRY--------------------------------------W-------------LSWSTIGSPHMYRYMLVQRSKALSKS
        YSFYGM E FGFAPSLLLWLRY                                      W             L+    GSPHMYRYMLVQRSKALSKS
Subjt:  YSFYGMNEEFGFAPSLLLWLRY--------------------------------------W-------------LSWSTIGSPHMYRYMLVQRSKALSKS

Query:  KKE
        KKE
Subjt:  KKE

TrEMBL top hitse value%identityAlignment
A0A6J1FPK4 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase2.9e-0743.69Show/hide
Query:  YSFYGMNEEFGFAPSLLLWLRY--------------------------------------W-------------LSWSTIGSPHMYRYMLVQRSKALSKS
        YSFYGM E FGFAPSLLLWLRY                                      W             L+    GSPHMYRYMLVQRSKALSKS
Subjt:  YSFYGMNEEFGFAPSLLLWLRY--------------------------------------W-------------LSWSTIGSPHMYRYMLVQRSKALSKS

Query:  KKE
        KKE
Subjt:  KKE

A0A6J1FQM5 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase2.9e-0743.69Show/hide
Query:  YSFYGMNEEFGFAPSLLLWLRY--------------------------------------W-------------LSWSTIGSPHMYRYMLVQRSKALSKS
        YSFYGM E FGFAPSLLLWLRY                                      W             L+    GSPHMYRYMLVQRSKALSKS
Subjt:  YSFYGMNEEFGFAPSLLLWLRY--------------------------------------W-------------LSWSTIGSPHMYRYMLVQRSKALSKS

Query:  KKE
        KKE
Subjt:  KKE

A0A6J1FST0 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase2.9e-0743.69Show/hide
Query:  YSFYGMNEEFGFAPSLLLWLRY--------------------------------------W-------------LSWSTIGSPHMYRYMLVQRSKALSKS
        YSFYGM E FGFAPSLLLWLRY                                      W             L+    GSPHMYRYMLVQRSKALSKS
Subjt:  YSFYGMNEEFGFAPSLLLWLRY--------------------------------------W-------------LSWSTIGSPHMYRYMLVQRSKALSKS

Query:  KKE
        KKE
Subjt:  KKE

A0A6J1IEF4 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase2.9e-0743.69Show/hide
Query:  YSFYGMNEEFGFAPSLLLWLRY--------------------------------------W-------------LSWSTIGSPHMYRYMLVQRSKALSKS
        YSFYGM E FGFAPSLLLWLRY                                      W             L+    GSPHMYRYMLVQRSKALSKS
Subjt:  YSFYGMNEEFGFAPSLLLWLRY--------------------------------------W-------------LSWSTIGSPHMYRYMLVQRSKALSKS

Query:  KKE
        KKE
Subjt:  KKE

A0A6J1IKY7 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase2.9e-0743.69Show/hide
Query:  YSFYGMNEEFGFAPSLLLWLRY--------------------------------------W-------------LSWSTIGSPHMYRYMLVQRSKALSKS
        YSFYGM E FGFAPSLLLWLRY                                      W             L+    GSPHMYRYMLVQRSKALSKS
Subjt:  YSFYGMNEEFGFAPSLLLWLRY--------------------------------------W-------------LSWSTIGSPHMYRYMLVQRSKALSKS

Query:  KKE
        KKE
Subjt:  KKE

SwissProt top hitse value%identityAlignment
Q5ZEJ0 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2B2.6e-0535.64Show/hide
Query:  YSFYGMNEEFGFAPSLLLWLRY--------------------------------------W-----LSWSTI--------GSPHMYRYMLVQRSKALSKS
        YSF+GM E FGFAPS LLWLRY                                      W      S+++I        GSPHM+ YML QR KAL+K+
Subjt:  YSFYGMNEEFGFAPSLLLWLRY--------------------------------------W-----LSWSTI--------GSPHMYRYMLVQRSKALSKS

Query:  K
        K
Subjt:  K

Q7XSZ4 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A7.6e-0534.65Show/hide
Query:  YSFYGMNEEFGFAPSLLLWLRY--------------------------------------W-------------LSWSTIGSPHMYRYMLVQRSKALSKS
        YSF+GM E FGFAPS LLWLRY                                      W             L+    GSPHM+ YML QR KAL+K+
Subjt:  YSFYGMNEEFGFAPSLLLWLRY--------------------------------------W-------------LSWSTIGSPHMYRYMLVQRSKALSKS

Query:  K
        K
Subjt:  K

Q8VZB2 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 21.3e-0435.92Show/hide
Query:  YSFYGMNEEFGFAPSLLLWLRY------------------WLS-------------------------WSTI--------GSPHMYRYMLVQRSKALSKS
        YSF+G  E  GFAPS  LWLRY                  +L+                         ++TI        GSPHMYRYML QR +ALSKS
Subjt:  YSFYGMNEEFGFAPSLLLWLRY------------------WLS-------------------------WSTI--------GSPHMYRYMLVQRSKALSKS

Query:  KKE
        K+E
Subjt:  KKE

Arabidopsis top hitse value%identityAlignment
AT5G10480.1 Protein-tyrosine phosphatase-like, PTPLA9.2e-0635.92Show/hide
Query:  YSFYGMNEEFGFAPSLLLWLRY------------------WLS-------------------------WSTI--------GSPHMYRYMLVQRSKALSKS
        YSF+G  E  GFAPS  LWLRY                  +L+                         ++TI        GSPHMYRYML QR +ALSKS
Subjt:  YSFYGMNEEFGFAPSLLLWLRY------------------WLS-------------------------WSTI--------GSPHMYRYMLVQRSKALSKS

Query:  KKE
        K+E
Subjt:  KKE

AT5G10480.2 Protein-tyrosine phosphatase-like, PTPLA9.2e-0635.92Show/hide
Query:  YSFYGMNEEFGFAPSLLLWLRY------------------WLS-------------------------WSTI--------GSPHMYRYMLVQRSKALSKS
        YSF+G  E  GFAPS  LWLRY                  +L+                         ++TI        GSPHMYRYML QR +ALSKS
Subjt:  YSFYGMNEEFGFAPSLLLWLRY------------------WLS-------------------------WSTI--------GSPHMYRYMLVQRSKALSKS

Query:  KKE
        K+E
Subjt:  KKE

AT5G10480.3 Protein-tyrosine phosphatase-like, PTPLA9.2e-0635.92Show/hide
Query:  YSFYGMNEEFGFAPSLLLWLRY------------------WLS-------------------------WSTI--------GSPHMYRYMLVQRSKALSKS
        YSF+G  E  GFAPS  LWLRY                  +L+                         ++TI        GSPHMYRYML QR +ALSKS
Subjt:  YSFYGMNEEFGFAPSLLLWLRY------------------WLS-------------------------WSTI--------GSPHMYRYMLVQRSKALSKS

Query:  KKE
        K+E
Subjt:  KKE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAACTTCTGTCAGGAGAGAGAAAGGAGAATATGGTTATAACCATAAGCCGGAGGAGAGAGCACAACTTTTGATTCAGCAAGGGTATTCATTTTATGGCATGAATGA
GGAGTTTGGTTTTGCACCTTCATTGCTCCTATGGCTAAGGTACTGGCTCTCCTGGAGCACAATTGGAAGTCCTCATATGTACCGCTACATGCTTGTCCAGAGGTCAAAAG
CTCTCTCAAAATCCAAAAAAGAACAGAAAAAAATGAAGTATTGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGACAACTTCTGTCAGGAGAGAGAAAGGAGAATATGGTTATAACCATAAGCCGGAGGAGAGAGCACAACTTTTGATTCAGCAAGGGTATTCATTTTATGGCATGAATGA
GGAGTTTGGTTTTGCACCTTCATTGCTCCTATGGCTAAGGTACTGGCTCTCCTGGAGCACAATTGGAAGTCCTCATATGTACCGCTACATGCTTGTCCAGAGGTCAAAAG
CTCTCTCAAAATCCAAAAAAGAACAGAAAAAAATGAAGTATTGTTAA
Protein sequenceShow/hide protein sequence
MTTSVRREKGEYGYNHKPEERAQLLIQQGYSFYGMNEEFGFAPSLLLWLRYWLSWSTIGSPHMYRYMLVQRSKALSKSKKEQKKMKYC