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CmoCh04G009350 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G009350
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationCmo_Chr04:4721310..4723562
RNA-Seq ExpressionCmoCh04G009350
SyntenyCmoCh04G009350
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046770.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.5e-0756.72Show/hide
Query:  DSSRTCRKMKLSALFR--DNQFHRSAGERLGGNYIHGSSGLNKSEEAIEHEDEDSPGGNAEDEIADV
        D+ RT    ++   FR  + QF  +AG+RLG NYIHG S LN+SEEA+EHE EDS GG+ ED+IADV
Subjt:  DSSRTCRKMKLSALFR--DNQFHRSAGERLGGNYIHGSSGLNKSEEAIEHEDEDSPGGNAEDEIADV
TrEMBL top hitse value%identityAlignment
A0A5A7TUF9 Ty3-gypsy retrotransposon protein1.2e-0756.72Show/hide
Query:  DSSRTCRKMKLSALFR--DNQFHRSAGERLGGNYIHGSSGLNKSEEAIEHEDEDSPGGNAEDEIADV
        D+ RT    ++   FR  + QF  +AG+RLG NYIHG S LN+SEEA+EHE EDS GG+ ED+IADV
Subjt:  DSSRTCRKMKLSALFR--DNQFHRSAGERLGGNYIHGSSGLNKSEEAIEHEDEDSPGGNAEDEIADV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGTGAAAATGGAAGATTGGATGATGGGCACGTCGTCTTACCATAAGTCCATCAAACTCACTAAGATCACGAGGCCAACTGTTGAGGAAATAACATACAGCCCTGA
CCACACATTGTCACCGGTTCCAACCAACACAGACATGTTGCAACCCTTTGACAGTGGACATATTGAAGTCACCTTTGAGGAAGAGATCTCTTTGGCTTTATCATTCAAGA
TCTTTCCCCGCAGCTTCTCTGTCCATTTCCCAAGCACTTTTATCAGAATCGCCAGCCGATCCTCCCCTTCCAATGGACTCGATGACACACTGAACGGATGCCATTGCAGC
AGCGACAGCTCTCGAACTTGCAGGAAGATGAAACTCAGCGCATTGTTTCGAGATAATCAATTCCACCGTTCCGCAGGGGAGCGCCTTGGCGGAAATTACATCCACGGTTC
TTCTGGATTGAATAAATCTGAGGAAGCGATCGAGCATGAAGATGAAGATTCCCCCGGCGGCAATGCTGAAGACGAAATCGCCGACGTGCAGGGCCAAGAACAAGACGAAC
ACGATGTATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGTGAAAATGGAAGATTGGATGATGGGCACGTCGTCTTACCATAAGTCCATCAAACTCACTAAGATCACGAGGCCAACTGTTGAGGAAATAACATACAGCCCTGA
CCACACATTGTCACCGGTTCCAACCAACACAGACATGTTGCAACCCTTTGACAGTGGACATATTGAAGTCACCTTTGAGGAAGAGATCTCTTTGGCTTTATCATTCAAGA
TCTTTCCCCGCAGCTTCTCTGTCCATTTCCCAAGCACTTTTATCAGAATCGCCAGCCGATCCTCCCCTTCCAATGGACTCGATGACACACTGAACGGATGCCATTGCAGC
AGCGACAGCTCTCGAACTTGCAGGAAGATGAAACTCAGCGCATTGTTTCGAGATAATCAATTCCACCGTTCCGCAGGGGAGCGCCTTGGCGGAAATTACATCCACGGTTC
TTCTGGATTGAATAAATCTGAGGAAGCGATCGAGCATGAAGATGAAGATTCCCCCGGCGGCAATGCTGAAGACGAAATCGCCGACGTGCAGGGCCAAGAACAAGACGAAC
ACGATGTATAA
Protein sequenceShow/hide protein sequence
MAVKMEDWMMGTSSYHKSIKLTKITRPTVEEITYSPDHTLSPVPTNTDMLQPFDSGHIEVTFEEEISLALSFKIFPRSFSVHFPSTFIRIASRSSPSNGLDDTLNGCHCS
SDSSRTCRKMKLSALFRDNQFHRSAGERLGGNYIHGSSGLNKSEEAIEHEDEDSPGGNAEDEIADVQGQEQDEHDV