; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh04G009640 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G009640
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPMD domain-containing protein
Genome locationCmo_Chr04:4903172..4904211
RNA-Seq ExpressionCmoCh04G009640
SyntenyCmoCh04G009640
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600722.1 hypothetical protein SDJN03_05955, partial [Cucurbita argyrosperma subsp. sororia]1.7e-7598.62Show/hide
Query:  MSEIGSERSKSWNIYTTPDQSPSSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVP
        MSEIGSERSKSWNIYTTPDQSPSSQTGIGQ+APWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVP
Subjt:  MSEIGSERSKSWNIYTTPDQSPSSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVP

Query:  TSYAADFSVLMPGQHIPTFIAQPAPLPCQREGTYWPSHDHNFLGP
        TSYAADFSVLMPGQHIPTFIAQPAPLPCQREGTYWPSHDHNF GP
Subjt:  TSYAADFSVLMPGQHIPTFIAQPAPLPCQREGTYWPSHDHNFLGP

XP_004133716.1 uncharacterized protein LOC101206733 isoform X1 [Cucumis sativus]1.3e-6789.66Show/hide
Query:  MSEIGSERSKSWNIYTTPDQSPSSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVP
        MSEIGSERSKSWNIYTTPDQSPSSQTGIGQ+APWKNFGSSMNAISFGFVATAILISMFL+MAIFEHLFRP+S FSSS EVTNN ++S P EKFASPNTV 
Subjt:  MSEIGSERSKSWNIYTTPDQSPSSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVP

Query:  TSYAADFSVLMPGQHIPTFIAQPAPLPCQREGTYWPSHDHNFLGP
        TSYA+DFSVLMPGQHIPTFIAQPAPLPCQREG YWPSH HNF GP
Subjt:  TSYAADFSVLMPGQHIPTFIAQPAPLPCQREGTYWPSHDHNFLGP

XP_022942533.1 uncharacterized protein LOC111447541 [Cucurbita moschata]1.2e-76100Show/hide
Query:  MSEIGSERSKSWNIYTTPDQSPSSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVP
        MSEIGSERSKSWNIYTTPDQSPSSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVP
Subjt:  MSEIGSERSKSWNIYTTPDQSPSSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVP

Query:  TSYAADFSVLMPGQHIPTFIAQPAPLPCQREGTYWPSHDHNFLGP
        TSYAADFSVLMPGQHIPTFIAQPAPLPCQREGTYWPSHDHNFLGP
Subjt:  TSYAADFSVLMPGQHIPTFIAQPAPLPCQREGTYWPSHDHNFLGP

XP_022983836.1 uncharacterized protein LOC111482330 [Cucurbita maxima]1.7e-7598.62Show/hide
Query:  MSEIGSERSKSWNIYTTPDQSPSSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVP
        MSEIGSERSKSWNIYTTPDQSPSSQTGIGQ+APWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVP
Subjt:  MSEIGSERSKSWNIYTTPDQSPSSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVP

Query:  TSYAADFSVLMPGQHIPTFIAQPAPLPCQREGTYWPSHDHNFLGP
        TSYAADFSVLMPGQHIPTFIAQPAPLPCQREGTYWPSHDHNF GP
Subjt:  TSYAADFSVLMPGQHIPTFIAQPAPLPCQREGTYWPSHDHNFLGP

XP_023540824.1 uncharacterized protein LOC111801082 [Cucurbita pepo subsp. pepo]1.9e-7497.24Show/hide
Query:  MSEIGSERSKSWNIYTTPDQSPSSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVP
        MSEIGSERSKSWNIYTTPDQSPSSQ GIGQ+APWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKF+SPNTVP
Subjt:  MSEIGSERSKSWNIYTTPDQSPSSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVP

Query:  TSYAADFSVLMPGQHIPTFIAQPAPLPCQREGTYWPSHDHNFLGP
        TSYAADFSVLMPGQHIPTFIAQPAPLPCQREGTYWPSHDHNF GP
Subjt:  TSYAADFSVLMPGQHIPTFIAQPAPLPCQREGTYWPSHDHNFLGP

TrEMBL top hitse value%identityAlignment
A0A0A0L6N7 Uncharacterized protein6.3e-6889.66Show/hide
Query:  MSEIGSERSKSWNIYTTPDQSPSSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVP
        MSEIGSERSKSWNIYTTPDQSPSSQTGIGQ+APWKNFGSSMNAISFGFVATAILISMFL+MAIFEHLFRP+S FSSS EVTNN ++S P EKFASPNTV 
Subjt:  MSEIGSERSKSWNIYTTPDQSPSSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVP

Query:  TSYAADFSVLMPGQHIPTFIAQPAPLPCQREGTYWPSHDHNFLGP
        TSYA+DFSVLMPGQHIPTFIAQPAPLPCQREG YWPSH HNF GP
Subjt:  TSYAADFSVLMPGQHIPTFIAQPAPLPCQREGTYWPSHDHNFLGP

A0A1S4DZ08 uncharacterized protein LOC1034933227.0e-6789.66Show/hide
Query:  MSEIGSERSKSWNIYTTPDQSPSSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVP
        MSEIGSERSKSWNIYTTPDQSPSSQTGIGQ+APWKNFGSSMNAISFGFVATAILISMFL+MAIFEHLFRP+S FSSS EVTNN ++S P EKFASPNTV 
Subjt:  MSEIGSERSKSWNIYTTPDQSPSSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVP

Query:  TSYAADFSVLMPGQHIPTFIAQPAPLPCQREGTYWPSHDHNFLGP
        TSYA+DFSVLMPGQHIPTFIAQPAPLPCQREG YWPSH HNF GP
Subjt:  TSYAADFSVLMPGQHIPTFIAQPAPLPCQREGTYWPSHDHNFLGP

A0A5D3BTG7 Uncharacterized protein7.0e-6789.66Show/hide
Query:  MSEIGSERSKSWNIYTTPDQSPSSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVP
        MSEIGSERSKSWNIYTTPDQSPSSQTGIGQ+APWKNFGSSMNAISFGFVATAILISMFL+MAIFEHLFRP+S FSSS EVTNN ++S P EKFASPNTV 
Subjt:  MSEIGSERSKSWNIYTTPDQSPSSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVP

Query:  TSYAADFSVLMPGQHIPTFIAQPAPLPCQREGTYWPSHDHNFLGP
        TSYA+DFSVLMPGQHIPTFIAQPAPLPCQREG YWPSH HNF GP
Subjt:  TSYAADFSVLMPGQHIPTFIAQPAPLPCQREGTYWPSHDHNFLGP

A0A6J1FV27 uncharacterized protein LOC1114475415.7e-77100Show/hide
Query:  MSEIGSERSKSWNIYTTPDQSPSSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVP
        MSEIGSERSKSWNIYTTPDQSPSSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVP
Subjt:  MSEIGSERSKSWNIYTTPDQSPSSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVP

Query:  TSYAADFSVLMPGQHIPTFIAQPAPLPCQREGTYWPSHDHNFLGP
        TSYAADFSVLMPGQHIPTFIAQPAPLPCQREGTYWPSHDHNFLGP
Subjt:  TSYAADFSVLMPGQHIPTFIAQPAPLPCQREGTYWPSHDHNFLGP

A0A6J1J0H1 uncharacterized protein LOC1114823308.2e-7698.62Show/hide
Query:  MSEIGSERSKSWNIYTTPDQSPSSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVP
        MSEIGSERSKSWNIYTTPDQSPSSQTGIGQ+APWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVP
Subjt:  MSEIGSERSKSWNIYTTPDQSPSSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVP

Query:  TSYAADFSVLMPGQHIPTFIAQPAPLPCQREGTYWPSHDHNFLGP
        TSYAADFSVLMPGQHIPTFIAQPAPLPCQREGTYWPSHDHNF GP
Subjt:  TSYAADFSVLMPGQHIPTFIAQPAPLPCQREGTYWPSHDHNFLGP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G09812.1 unknown protein3.5e-2653.03Show/hide
Query:  RSKSWNIYTTPDQSPSSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRP-TSSFSSSGEVTNNFAQ-SGPVEKFA-SPNTVPTSYA
        +S SW+IY +P +  S       + PW++  +SMNAISFGFVATAILISMFLIMAIFEHLFRP  SSF S  ++       S   +K A   + VP S  
Subjt:  RSKSWNIYTTPDQSPSSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRP-TSSFSSSGEVTNNFAQ-SGPVEKFA-SPNTVPTSYA

Query:  ADFSVLMPGQHIPTFIAQPAPLPCQREGTYWP
         D SV+MPG+ +P+ IA PAPLPC+REG +WP
Subjt:  ADFSVLMPGQHIPTFIAQPAPLPCQREGTYWP

AT1G11120.1 unknown protein3.2e-1641.5Show/hide
Query:  QDAPWKN-FGSSMNAISFGFVATAILISMFLIMAIFEHLFR-----PTSSFSSSGEV----TNNFAQSGPVEKF------ASPNTV--------------
        ++ PWK+ F  S+NA+SFGFVATAILISMFL+MAIFE L R      T+S SSS  V     +    +G   K       AS N +              
Subjt:  QDAPWKN-FGSSMNAISFGFVATAILISMFLIMAIFEHLFR-----PTSSFSSSGEV----TNNFAQSGPVEKF------ASPNTV--------------

Query:  ------PTSYAADFSVLMPGQHIPTFIAQPAPLPCQREGTYWPSHDH
               T Y+   SVLMPG  IPTFIA PAP+PC  +      H H
Subjt:  ------PTSYAADFSVLMPGQHIPTFIAQPAPLPCQREGTYWPSHDH

AT1G11120.2 unknown protein1.4e-1947.93Show/hide
Query:  QDAPWKN-FGSSMNAISFGFVATAILISMFLIMAIFEHLFR-----PTSSFSSSGEV----TNNFAQSGPVEKFASPNTVPTSYAADFSVLMPGQHIPTF
        ++ PWK+ F  S+NA+SFGFVATAILISMFL+MAIFE L R      T+S SSS  V     +    +G   K    +   T Y+   SVLMPG  IPTF
Subjt:  QDAPWKN-FGSSMNAISFGFVATAILISMFLIMAIFEHLFR-----PTSSFSSSGEV----TNNFAQSGPVEKFASPNTVPTSYAADFSVLMPGQHIPTF

Query:  IAQPAPLPCQREGTYWPSHDH
        IA PAP+PC  +      H H
Subjt:  IAQPAPLPCQREGTYWPSHDH

AT1G58007.1 unknown protein8.0e-2348.12Show/hide
Query:  SERSKSWNIYTTPDQSPSSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVPTSYAA
        S   ++W+IY T D S                GSSMNAISFGFVATAILI MF+IMAI EHLFR  S  SSS +V +    S   +K A   ++     +
Subjt:  SERSKSWNIYTTPDQSPSSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVPTSYAA

Query:  DFSVLMPGQHIPTFIAQPAPLPCQREGTYWPSH
        D SV+MPG  +P+++A PAP PC+REG  WPSH
Subjt:  DFSVLMPGQHIPTFIAQPAPLPCQREGTYWPSH

AT1G58007.2 unknown protein8.0e-2348.12Show/hide
Query:  SERSKSWNIYTTPDQSPSSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVPTSYAA
        S   ++W+IY T D S                GSSMNAISFGFVATAILI MF+IMAI EHLFR  S  SSS +V +    S   +K A   ++     +
Subjt:  SERSKSWNIYTTPDQSPSSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVPTSYAA

Query:  DFSVLMPGQHIPTFIAQPAPLPCQREGTYWPSH
        D SV+MPG  +P+++A PAP PC+REG  WPSH
Subjt:  DFSVLMPGQHIPTFIAQPAPLPCQREGTYWPSH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGAGATTGGTTCTGAAAGATCAAAGTCATGGAACATATACACAACTCCAGACCAGAGCCCATCATCTCAAACAGGCATTGGTCAAGACGCTCCTTGGAAGAACTT
TGGATCCTCCATGAATGCCATTTCCTTTGGCTTTGTTGCTACTGCAATCTTGATATCCATGTTCCTTATCATGGCCATCTTTGAGCATCTTTTTAGACCAACTTCTTCTT
TCTCCTCCTCTGGTGAAGTGACCAACAACTTTGCACAATCGGGTCCGGTCGAGAAATTCGCTAGTCCAAATACGGTGCCAACATCATATGCAGCTGATTTCTCGGTGTTG
ATGCCAGGTCAGCACATCCCCACCTTCATTGCCCAGCCAGCCCCTCTGCCATGCCAAAGAGAGGGGACTTATTGGCCATCTCACGACCATAATTTTTTAGGCCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGAGATTGGTTCTGAAAGATCAAAGTCATGGAACATATACACAACTCCAGACCAGAGCCCATCATCTCAAACAGGCATTGGTCAAGACGCTCCTTGGAAGAACTT
TGGATCCTCCATGAATGCCATTTCCTTTGGCTTTGTTGCTACTGCAATCTTGATATCCATGTTCCTTATCATGGCCATCTTTGAGCATCTTTTTAGACCAACTTCTTCTT
TCTCCTCCTCTGGTGAAGTGACCAACAACTTTGCACAATCGGGTCCGGTCGAGAAATTCGCTAGTCCAAATACGGTGCCAACATCATATGCAGCTGATTTCTCGGTGTTG
ATGCCAGGTCAGCACATCCCCACCTTCATTGCCCAGCCAGCCCCTCTGCCATGCCAAAGAGAGGGGACTTATTGGCCATCTCACGACCATAATTTTTTAGGCCCTTGA
Protein sequenceShow/hide protein sequence
MSEIGSERSKSWNIYTTPDQSPSSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVPTSYAADFSVL
MPGQHIPTFIAQPAPLPCQREGTYWPSHDHNFLGP