CuGenDBv2

Gene ID	CmoCh04G009770
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Winged helix-turn-helix DNA-binding domain containing protein
Genome location	Cmo_Chr04:4959384..4959668
RNA-Seq Expression	CmoCh04G009770
Synteny	CmoCh04G009770
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component) GO:0003677 - DNA binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022142863.1 uncharacterized protein LOC111012874 [Momordica charantia]

7.5e-22

91.53

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Query:  MGGRGVIGDKWSMRVLWVCALGSAIGLYMVSQERQLQNRRRMLAESLKDVESGGSGENV
        MGGRGVIGDKWSMRVLWVCA+GSAIGLYMV+QERQLQNR+RMLAESL DVESGG+GENV
Subjt:  MGGRGVIGDKWSMRVLWVCALGSAIGLYMVSQERQLQNRRRMLAESLKDVESGGSGENV

XP_022929341.1 uncharacterized protein LOC111435944 [Cucurbita moschata]

1.2e-22

94.92

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Query:  MGGRGVIGDKWSMRVLWVCALGSAIGLYMVSQERQLQNRRRMLAESLKDVESGGSGENV
        MGGRGVIGDKWSMRVLWVCALGSA+GLYMV+QERQLQNR RMLAESLKDVESGGSGENV
Subjt:  MGGRGVIGDKWSMRVLWVCALGSAIGLYMVSQERQLQNRRRMLAESLKDVESGGSGENV

XP_022943152.1 uncharacterized protein LOC111447969 [Cucurbita moschata]

8.0e-24

100

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Query:  MGGRGVIGDKWSMRVLWVCALGSAIGLYMVSQERQLQNRRRMLAESLKDVESGGSGENV
        MGGRGVIGDKWSMRVLWVCALGSAIGLYMVSQERQLQNRRRMLAESLKDVESGGSGENV
Subjt:  MGGRGVIGDKWSMRVLWVCALGSAIGLYMVSQERQLQNRRRMLAESLKDVESGGSGENV

XP_022985081.1 uncharacterized protein LOC111483159 [Cucurbita maxima]

3.4e-22

93.22

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Query:  MGGRGVIGDKWSMRVLWVCALGSAIGLYMVSQERQLQNRRRMLAESLKDVESGGSGENV
        MGGRGVIGDKWSMRVLWVCALGSA+G YMV+QERQLQNR RMLAESLKDVESGGSGENV
Subjt:  MGGRGVIGDKWSMRVLWVCALGSAIGLYMVSQERQLQNRRRMLAESLKDVESGGSGENV

XP_038903238.1 uncharacterized protein LOC120089884 [Benincasa hispida]

1.5e-22

94.92

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Query:  MGGRGVIGDKWSMRVLWVCALGSAIGLYMVSQERQLQNRRRMLAESLKDVESGGSGENV
        MGGRGVIGDKWSMRVLWVCALGSAIGLYMV+QERQLQNR+RMLAESLKD ESGGSGENV
Subjt:  MGGRGVIGDKWSMRVLWVCALGSAIGLYMVSQERQLQNRRRMLAESLKDVESGGSGENV

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CPB9 uncharacterized protein LOC111012874

3.6e-22

91.53

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Query:  MGGRGVIGDKWSMRVLWVCALGSAIGLYMVSQERQLQNRRRMLAESLKDVESGGSGENV
        MGGRGVIGDKWSMRVLWVCA+GSAIGLYMV+QERQLQNR+RMLAESL DVESGG+GENV
Subjt:  MGGRGVIGDKWSMRVLWVCALGSAIGLYMVSQERQLQNRRRMLAESLKDVESGGSGENV

A0A6J1EMV3 uncharacterized protein LOC111435944

5.6e-23

94.92

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Query:  MGGRGVIGDKWSMRVLWVCALGSAIGLYMVSQERQLQNRRRMLAESLKDVESGGSGENV
        MGGRGVIGDKWSMRVLWVCALGSA+GLYMV+QERQLQNR RMLAESLKDVESGGSGENV
Subjt:  MGGRGVIGDKWSMRVLWVCALGSAIGLYMVSQERQLQNRRRMLAESLKDVESGGSGENV

A0A6J1FS83 uncharacterized protein LOC111447969

3.9e-24

100

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Query:  MGGRGVIGDKWSMRVLWVCALGSAIGLYMVSQERQLQNRRRMLAESLKDVESGGSGENV
        MGGRGVIGDKWSMRVLWVCALGSAIGLYMVSQERQLQNRRRMLAESLKDVESGGSGENV
Subjt:  MGGRGVIGDKWSMRVLWVCALGSAIGLYMVSQERQLQNRRRMLAESLKDVESGGSGENV

A0A6J1J744 uncharacterized protein LOC111483159

1.6e-22

93.22

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Query:  MGGRGVIGDKWSMRVLWVCALGSAIGLYMVSQERQLQNRRRMLAESLKDVESGGSGENV
        MGGRGVIGDKWSMRVLWVCALGSA+G YMV+QERQLQNR RMLAESLKDVESGGSGENV
Subjt:  MGGRGVIGDKWSMRVLWVCALGSAIGLYMVSQERQLQNRRRMLAESLKDVESGGSGENV

A0A6J1KQV7 uncharacterized protein LOC111496793

1.2e-20

89.83

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Query:  MGGRGVIGDKWSMRVLWVCALGSAIGLYMVSQERQLQNRRRMLAESLKDVESGGSGENV
        MGGRGVIG KW MRVLWVCALGSAIGLYMV+QERQLQNR+RMLAESLKDVESGG GE+V
Subjt:  MGGRGVIGDKWSMRVLWVCALGSAIGLYMVSQERQLQNRRRMLAESLKDVESGGSGENV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G15395.1 unknown protein

2.4e-18

69.49

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Query:  MGGRGVIGDKWSMRVLWVCALGSAIGLYMVSQERQLQNRRRMLAESLKDVESGGSGENV
        MG RG+I DKWSMR+LW CA+GSAIGLYMV+ ERQ QNR R +AESL+  ES G G+NV
Subjt:  MGGRGVIGDKWSMRVLWVCALGSAIGLYMVSQERQLQNRRRMLAESLKDVESGGSGENV

AT3G15395.2 unknown protein

2.4e-18

69.49

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Query:  MGGRGVIGDKWSMRVLWVCALGSAIGLYMVSQERQLQNRRRMLAESLKDVESGGSGENV
        MG RG+I DKWSMR+LW CA+GSAIGLYMV+ ERQ QNR R +AESL+  ES G G+NV
Subjt:  MGGRGVIGDKWSMRVLWVCALGSAIGLYMVSQERQLQNRRRMLAESLKDVESGGSGENV

AT3G15395.3 unknown protein

2.4e-18

69.49

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Query:  MGGRGVIGDKWSMRVLWVCALGSAIGLYMVSQERQLQNRRRMLAESLKDVESGGSGENV
        MG RG+I DKWSMR+LW CA+GSAIGLYMV+ ERQ QNR R +AESL+  ES G G+NV
Subjt:  MGGRGVIGDKWSMRVLWVCALGSAIGLYMVSQERQLQNRRRMLAESLKDVESGGSGENV

AT3G15395.4 unknown protein

2.4e-18

69.49

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Query:  MGGRGVIGDKWSMRVLWVCALGSAIGLYMVSQERQLQNRRRMLAESLKDVESGGSGENV
        MG RG+I DKWSMR+LW CA+GSAIGLYMV+ ERQ QNR R +AESL+  ES G G+NV
Subjt:  MGGRGVIGDKWSMRVLWVCALGSAIGLYMVSQERQLQNRRRMLAESLKDVESGGSGENV

Sequences

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CDS sequence

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ATGGGAGGCAGAGGAGTTATTGGTGATAAATGGTCCATGAGGGTTCTTTGGGTCTGTGCCCTCGGGAGTGCGATCGGTTTGTATATGGTTTCTCAAGAAAGACAATTGCA
GAACAGGCGAAGAATGTTGGCTGAGAGTCTGAAAGATGTGGAATCAGGAGGCAGTGGGGAAAATGTTTAG

mRNA sequence

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ATGGGAGGCAGAGGAGTTATTGGTGATAAATGGTCCATGAGGGTTCTTTGGGTCTGTGCCCTCGGGAGTGCGATCGGTTTGTATATGGTTTCTCAAGAAAGACAATTGCA
GAACAGGCGAAGAATGTTGGCTGAGAGTCTGAAAGATGTGGAATCAGGAGGCAGTGGGGAAAATGTTTAG

Protein sequence

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MGGRGVIGDKWSMRVLWVCALGSAIGLYMVSQERQLQNRRRMLAESLKDVESGGSGENV

CmoCh04G009770 (gene) of Cucurbita moschata (Rifu) v1 genome