CuGenDBv2

Gene ID	CmoCh04G009850
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Genome location	Cmo_Chr04:4980276..4982364
RNA-Seq Expression	CmoCh04G009850
Synteny	CmoCh04G009850
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6577394.1 Chlorophyll a-b binding protein 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

5.3e-33

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Query:  MAKNRNKKKGSGAISMDITQNSVHELPQAMDVSESAVHKPASGALNLKLKKGGRPMKRSKNVRKT----KAISKTEQSAEKILKNQGKTTRIHSAKTLYE
        MAKN+NKKK SGAISMDIT+N+  ELPQAMDVSESAVHKPASGALNLKLKK GRPMKRSKNVRKT    KAISK EQSAEKILKNQ KTTRIHSAKTLYE
Subjt:  MAKNRNKKKGSGAISMDITQNSVHELPQAMDVSESAVHKPASGALNLKLKKGGRPMKRSKNVRKT----KAISKTEQSAEKILKNQGKTTRIHSAKTLYE

XP_008452291.1 PREDICTED: uncharacterized protein LOC103493362 [Cucumis melo]

2.9e-31

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Query:  MAKNRNKKKGSGAISMDITQNSVHELPQAMDVSESAVHKPASGALNLKLKKGGRPMKRSKNVRKT----KAISKTEQSAEKILKNQGKTTRIHSAKTLYE
        MAKNRNKKK  GA+SMD+T+NSVHELPQAMDVS S VHKPASGAL+LKLKK GRPMKRSKNVRKT    KAISK+EQS EKILKNQ KTTRI SAKTLYE
Subjt:  MAKNRNKKKGSGAISMDITQNSVHELPQAMDVSESAVHKPASGALNLKLKKGGRPMKRSKNVRKT----KAISKTEQSAEKILKNQGKTTRIHSAKTLYE

XP_022929206.1 uncharacterized protein LOC111435867 [Cucurbita moschata]

5.3e-33

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Query:  MAKNRNKKKGSGAISMDITQNSVHELPQAMDVSESAVHKPASGALNLKLKKGGRPMKRSKNVRKT----KAISKTEQSAEKILKNQGKTTRIHSAKTLYE
        MAKN+NKKK SGAISMDIT+N+  ELPQAMDVSESAVHKPASGALNLKLKK GRPMKRSKNVRKT    KAISK EQSAEKILKNQ KTTRIHSAKTLYE
Subjt:  MAKNRNKKKGSGAISMDITQNSVHELPQAMDVSESAVHKPASGALNLKLKKGGRPMKRSKNVRKT----KAISKTEQSAEKILKNQGKTTRIHSAKTLYE

XP_022985277.1 uncharacterized protein LOC111483316 [Cucurbita maxima]

2.0e-32

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Query:  MAKNRNKKKGSGAISMDITQNSVHELPQAMDVSESAVHKPASGALNLKLKKGGRPMKRSKNVRKT----KAISKTEQSAEKILKNQGKTTRIHSAKTLYE
        MAKN+NKK+ SGAISMDIT+N+ HELPQAMDVSESAVHKPASGALNLKLKK GRPMKRSKNVRKT    KAISK EQSAEKILKNQ KTTRIHSAKTLYE
Subjt:  MAKNRNKKKGSGAISMDITQNSVHELPQAMDVSESAVHKPASGALNLKLKKGGRPMKRSKNVRKT----KAISKTEQSAEKILKNQGKTTRIHSAKTLYE

XP_023538255.1 uncharacterized protein LOC111799087 [Cucurbita pepo subsp. pepo]

2.3e-36

92.08

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Query:  MAKNRN-KKKGSGAISMDITQNSVHELPQAMDVSESAVHKPASGALNLKLKKGGRPMKRSKNVRKT----KAISKTEQSAEKILKNQGKTTRIHSAKTLY
        MAKNRN KKKGSGAISMDIT+NSVHELPQAMDVSESAVHKPASGALNLKLKKGGR MKRSKNVRKT    KAISK+EQSAEKILKNQGKTTRIHSAKTLY
Subjt:  MAKNRN-KKKGSGAISMDITQNSVHELPQAMDVSESAVHKPASGALNLKLKKGGRPMKRSKNVRKT----KAISKTEQSAEKILKNQGKTTRIHSAKTLY

Query:  E
        E
Subjt:  E

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BUB2 uncharacterized protein LOC103493362

1.4e-31

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Query:  MAKNRNKKKGSGAISMDITQNSVHELPQAMDVSESAVHKPASGALNLKLKKGGRPMKRSKNVRKT----KAISKTEQSAEKILKNQGKTTRIHSAKTLYE
        MAKNRNKKK  GA+SMD+T+NSVHELPQAMDVS S VHKPASGAL+LKLKK GRPMKRSKNVRKT    KAISK+EQS EKILKNQ KTTRI SAKTLYE
Subjt:  MAKNRNKKKGSGAISMDITQNSVHELPQAMDVSESAVHKPASGALNLKLKKGGRPMKRSKNVRKT----KAISKTEQSAEKILKNQGKTTRIHSAKTLYE

A0A6A6MLZ5 Uncharacterized protein

2.2e-21

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Query:  MAKNRNKKKGSGAISMDITQNSVHELPQAMDVSESAVHKPASGALNLKLKKGGRPMKRSKNVRK----TKAISKTEQSAEKILKNQGKTTRIHSAKTLYE
        MAKNRNKKK +GA+SMDIT+ +V ++PQAMD SES V K ASG  N K+K  GRPMKRSKNVRK     KAISK EQS EK+LKN+ KT R  SAK LY+
Subjt:  MAKNRNKKKGSGAISMDITQNSVHELPQAMDVSESAVHKPASGALNLKLKKGGRPMKRSKNVRK----TKAISKTEQSAEKILKNQGKTTRIHSAKTLYE

A0A6J1CP23 uncharacterized protein LOC111012789

8.5e-21

75.9

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Query:  MDITQNSVHELPQAMDVSESAVHKPASGALNLKLKKGGRPMKRSKNVRKT----KAISKTEQSAEKILKNQGKTTRIHSAKTL
        MD+T+N+V +LPQAMDVSES VHKP SG LNLKL+K GRPMKRS+NVRKT    KAI K+EQSAEKI+KNQ KTTRI SAKTL
Subjt:  MDITQNSVHELPQAMDVSESAVHKPASGALNLKLKKGGRPMKRSKNVRKT----KAISKTEQSAEKILKNQGKTTRIHSAKTL

A0A6J1EMH0 uncharacterized protein LOC111435867

2.6e-33

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Query:  MAKNRNKKKGSGAISMDITQNSVHELPQAMDVSESAVHKPASGALNLKLKKGGRPMKRSKNVRKT----KAISKTEQSAEKILKNQGKTTRIHSAKTLYE
        MAKN+NKKK SGAISMDIT+N+  ELPQAMDVSESAVHKPASGALNLKLKK GRPMKRSKNVRKT    KAISK EQSAEKILKNQ KTTRIHSAKTLYE
Subjt:  MAKNRNKKKGSGAISMDITQNSVHELPQAMDVSESAVHKPASGALNLKLKKGGRPMKRSKNVRKT----KAISKTEQSAEKILKNQGKTTRIHSAKTLYE

A0A6J1J4F8 uncharacterized protein LOC111483316

9.7e-33

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Query:  MAKNRNKKKGSGAISMDITQNSVHELPQAMDVSESAVHKPASGALNLKLKKGGRPMKRSKNVRKT----KAISKTEQSAEKILKNQGKTTRIHSAKTLYE
        MAKN+NKK+ SGAISMDIT+N+ HELPQAMDVSESAVHKPASGALNLKLKK GRPMKRSKNVRKT    KAISK EQSAEKILKNQ KTTRIHSAKTLYE
Subjt:  MAKNRNKKKGSGAISMDITQNSVHELPQAMDVSESAVHKPASGALNLKLKKGGRPMKRSKNVRKT----KAISKTEQSAEKILKNQGKTTRIHSAKTLYE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G27380.1 unknown protein

3.2e-04

39.74

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Query:  MAKNRNKKKGSGAISMDITQN-SVHE-LPQAMDVSESAVHKPASGALNLKLKKGGRPMKRSKNVRKTKAISKTEQSAE
        M K RNKK      SMD++++ SV E  PQ MD +E+   K AS A +L   + G+PMKR+K     KA++    + E
Subjt:  MAKNRNKKKGSGAISMDITQN-SVHE-LPQAMDVSESAVHKPASGALNLKLKKGGRPMKRSKNVRKTKAISKTEQSAE

Sequences

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CDS sequence

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ATGGCGAAGAACAGGAATAAGAAGAAGGGAAGTGGAGCTATTTCAATGGACATAACCCAAAATTCTGTTCACGAGCTCCCTCAAGCGATGGACGTGTCTGAGTCTGCAGT
TCATAAACCAGCTTCTGGCGCTCTCAATCTAAAGTTGAAGAAGGGGGGAAGACCAATGAAGCGATCAAAGAATGTTAGGAAAACAAAAGCCATATCCAAGACCGAGCAAT
CCGCCGAGAAAATATTGAAAAATCAGGGGAAAACTACCAGGATACACTCTGCAAAAACATTGTATGAATGA

mRNA sequence

Show/hide mRNA sequence

TAGGGTTTTCATTGTCAATCTTCGCGGCTTTATTTATCGGCGATGGCGAAGAACAGGAATAAGAAGAAGGGAAGTGGAGCTATTTCAATGGACATAACCCAAAATTCTGT
TCACGAGCTCCCTCAAGCGATGGACGTGTCTGAGTCTGCAGTTCATAAACCAGCTTCTGGCGCTCTCAATCTAAAGTTGAAGAAGGGGGGAAGACCAATGAAGCGATCAA
AGAATGTTAGGAAAACAAAAGCCATATCCAAGACCGAGCAATCCGCCGAGAAAATATTGAAAAATCAGGGGAAAACTACCAGGATACACTCTGCAAAAACATTGTATGAA
TGATACAGCCTTTAACTTAGAAAATTGATTTATTTCTGTTCCCTTCATAGGTTTTTATGTTATTTACTTCGTCCCACAAAGTGTGTCAACCCTGCAAATTCCGAGTCCTA
GTCACTTGAGAAATCCATGTCTGAAAACCGGCCTAATTCCAGCGAGCTTCAAGAAAGATCCATAGGAGTCCAAAGGCCCAACCAGACCCATCCAAGCTTTTAGTTCTCGA
TCAAAGATGACTCTTTCCATTACTGCTACTGTATCTTTTCTAAGAGAAAGGTTGTAAATTTCAGGAAACGCGAGAGTTCCCACTCCACACGCTCTTCCAAAAACTAATCC
TCTGTCTATCTCCAGCTTCGGTAAATCTATGAATACCTTCCATGCTTATTGAAGATTTGGATTTACCTTTGGACTTGAGGGATTTCAAGGCCTTCTCTCTGCCCTCTGCC
GTAAAACAAATGTGAAAGATGTTGACTATTTACTCTTTTGCATCAAAGATGTGCTCCCCTTTAGCACAAAGAGCTTCAATATTATCCTCAATCGATCTCATAGAAACGTC
GCTTTGGCCTGTTATGTATTGTCCCAGCCTCTCAATTTTAAAATTGCTTTCGCCGGTTACATATTAGTGTTACTTATGGTTATTATGGACCTCACAATCCACCCTTTTGA
GGTGTGAGAGAAGTTTCCACACCTTAAAAGAATGTTTCGATGTTCCTCTCTAATCGATGTGGGACTTCACAATCTTGGGGGCTAGCGTCCATTTTGTCTAACTTTGATAT
CATTTGTAACAATCCAAGTCTACCACTAGCATATATTGTCCACTTTGGCCCGTTACATATCATCATTAGTCTTGCCGTACTAAAACTTATCCACAAATGAATTTTTCCTC
CATTTTTCCATTGGGAGGTAAGATCTCACACCTTCAAATGTAGAGATTATGAATGCAAACTAAGATAACTCACATAATTGATGATAAGGCTATGTGTCTCTCCTTCAAAT
CTAATCCTTTTCCATATTTTTGTGTGTTTTATTTGGCCTCACTCTCTTTATTTTCATCCGGATAACCTCCACCGCCTTAAATCTCACCATAGCTTAGCTGCTACCGACTA
GGCTTTGCGTTTCCATTTCTCATTTAAAACTCTCTCTCCTGGCCATTTTAAATTTTTA

Protein sequence

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MAKNRNKKKGSGAISMDITQNSVHELPQAMDVSESAVHKPASGALNLKLKKGGRPMKRSKNVRKTKAISKTEQSAEKILKNQGKTTRIHSAKTLYE

CmoCh04G009850 (gene) of Cucurbita moschata (Rifu) v1 genome