; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh04G009870 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G009870
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionChlorophyll a-b binding proteinic
Genome locationCmo_Chr04:4982967..4983744
RNA-Seq ExpressionCmoCh04G009870
SyntenyCmoCh04G009870
Gene Ontology termsGO:0009987 - cellular process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016020 - membrane (cellular component)
GO:0032991 - protein-containing complex (cellular component)
GO:0043229 - intracellular organelle (cellular component)
GO:0000166 - nucleotide binding (molecular function)
GO:0005515 - protein binding (molecular function)
GO:0016829 - lyase activity (molecular function)
GO:0043167 - ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ACR36733.1 unknown [Zea mays]3.4e-1834.48Show/hide
Query:  MVQKVLEGAFPSHDGLDKEPEHGEHGQPPVLDLLHLQLGEGDGVVGQSEWVEVLTP-----RSSPPSEKIWAPALNQT----------------------
        +V++VLEG     DGLD+E EHGEHG+  VLDLL L+LGEGDGVVG+++ VEVL         +   E + A AL++                       
Subjt:  MVQKVLEGAFPSHDGLDKEPEHGEHGQPPVLDLLHLQLGEGDGVVGQSEWVEVLTP-----RSSPPSEKIWAPALNQT----------------------

Query:  ----GSLKSTFNHFSSTSGVMHPKA-PNIAHLPWITCNSVRPYDGDGNYLKSSVLGEGLGIGGQPSSVPSIIAGELSVQVGGSLSGKRPQVLDSVWSIPQ
             +L+          G++   A P + HL        +      ++L+  V  E L + GQP  VP+++AGEL+ QV G L G+  QVLD+V ++PQ
Subjt:  ----GSLKSTFNHFSSTSGVMHPKA-PNIAHLPWITCNSVRPYDGDGNYLKSSVLGEGLGIGGQPSSVPSIIAGELSVQVGGSLSGKRPQVLDSVWSIPQ

Query:  FIS
         ++
Subjt:  FIS

KAF6992250.1 hypothetical protein CFC21_009263 [Triticum aestivum]1.8e-1633.33Show/hide
Query:  MVQKVLEGAFPSHDGLDKEPEHGEHGQPPVLDLLHLQLGEGDGVVGQSEWVEVLTP-----RSSPPSEKIWAPALNQTGSLKSTFNHFSST---------
        +V++VL+ A    D LD+EP+HGEHG+  +LDLLHL+L EGD VVG++E VEVL         +   E I A   +Q         H             
Subjt:  MVQKVLEGAFPSHDGLDKEPEHGEHGQPPVLDLLHLQLGEGDGVVGQSEWVEVLTP-----RSSPPSEKIWAPALNQTGSLKSTFNHFSST---------

Query:  -----------------SGVMHPKA-PNIAHLPWITCNSVRPYDGDGNYLKSSVLGEGLGIGGQPSSVPSIIAGELSVQVGGSLSGKRPQVLDSVWSIPQ
                          G++   A P + HL      S        ++L+  V  E L +GG+P  VP+++A EL+VQVG  L  +  QVLD+V ++PQ
Subjt:  -----------------SGVMHPKA-PNIAHLPWITCNSVRPYDGDGNYLKSSVLGEGLGIGGQPSSVPSIIAGELSVQVGGSLSGKRPQVLDSVWSIPQ

Query:  FISL
         ++L
Subjt:  FISL

KAG6421321.1 hypothetical protein SASPL_117872 [Salvia splendens]2.2e-2245.45Show/hide
Query:  MVQKVLEGAFPSHDGLDKEPEHGEHGQPPVLDLLHLQLGEGDGVVGQSEWVEVLTPRSSPPSEKIWAPALNQTGSLKSTFNHFSSTSGVMHPKAPNIAHL
        M+QKVLE +    D L +E EHGEHGQP VLDLL LQLG+GD VVGQ+EWVEVL  R       +   AL+       +     S    + PK       
Subjt:  MVQKVLEGAFPSHDGLDKEPEHGEHGQPPVLDLLHLQLGEGDGVVGQSEWVEVLTPRSSPPSEKIWAPALNQTGSLKSTFNHFSSTSGVMHPKAPNIAHL

Query:  PWITCNSVRPYDGDGNYLKSSVLGEGLGIGGQPSSVPSIIAGELSVQVGGSLSGKRPQVLDSVWS
             NS      D   ++  VLG+GLGIGGQ   VPS++ GE SV+VG SLS +  QVLD+V S
Subjt:  PWITCNSVRPYDGDGNYLKSSVLGEGLGIGGQPSSVPSIIAGELSVQVGGSLSGKRPQVLDSVWS

RLN33992.1 hypothetical protein C2845_PM03G05550 [Panicum miliaceum]1.6e-1534.34Show/hide
Query:  MVQKVLEGAFPSHDGLDKEPEHGEHGQPPVLDLLHLQLGEGDGVVGQSEWVEVL--TPRSSPPSEKIWAPALNQTGSLKSTFN----------HFSSTSG
        +V +VLE A    DGLD+E EHGEHG+  VL+LL L+LG+G GVVGQ+E VE      R    +E+    A+   G+ +                +  + 
Subjt:  MVQKVLEGAFPSHDGLDKEPEHGEHGQPPVLDLLHLQLGEGDGVVGQSEWVEVL--TPRSSPPSEKIWAPALNQTGSLKSTFN----------HFSSTSG

Query:  VMHP----------KAPNIAHLPWITCNSV------RPYDGDGNY--LKSSVLGEGLGIGGQPSSVPSIIAGELSVQVGGSLSGKRPQVLDSVWSIPQ
        V+ P          +   +A L  +    +      R   G      L+ +VLGEGLG+ GQP  VP+++AGEL+ QV   L+G+  +VLD+V ++P+
Subjt:  VMHP----------KAPNIAHLPWITCNSV------RPYDGDGNY--LKSSVLGEGLGIGGQPSSVPSIIAGELSVQVGGSLSGKRPQVLDSVWSIPQ

VVW58041.1 unnamed protein product, partial [Nymphaea colorata]4.5e-1531.98Show/hide
Query:  MVQKVLEGAFPSHDGLDKEPEHGEHGQPPVLDLLHLQLGEGDGVVGQSEWVEVLT-----------------PRSSPPSEKIWAP----ALNQTGSLKST
        +V +VL+G    H+GL KEPEHGEHG+  VLDLLHLQ  +  GV+GQ++W+E  T                 P +      + +P    AL+   +  + 
Subjt:  MVQKVLEGAFPSHDGLDKEPEHGEHGQPPVLDLLHLQLGEGDGVVGQSEWVEVLT-----------------PRSSPPSEKIWAP----ALNQTGSLKST

Query:  FNHFSSTSGVMHPKAP-NIAHLPWITCNSVR-------PYDGDG-NYLKSSVLGEGLGIGGQPSSVPSIIAGELSVQVGGSLSGKRPQVLDSVWSIP
            S T  +     P ++A L  +    +R        +   G ++L+  VLG+GL +  + S VP+I+  E + +VG S +G+  +VL++VW+IP
Subjt:  FNHFSSTSGVMHPKAP-NIAHLPWITCNSVR-------PYDGDG-NYLKSSVLGEGLGIGGQPSSVPSIIAGELSVQVGGSLSGKRPQVLDSVWSIP

TrEMBL top hitse value%identityAlignment
A0A2P2LQR3 Chlorophyll a-b binding proteinic9.9e-1629.9Show/hide
Query:  MVQKVLEGAFPSHDGLDKEPEHGEHGQPPVLDLLHLQLGEGDGVVGQSEWVEVLTPRSSPPSEKIWAPALNQTGSLKSTFNHFSSTSGVMHP--------
        +V ++L+ +  SH+GL+KE EH EHGQ  +LDLLHLQL +   V+ QS+WV+  T          W   L++  +  +   H S    +  P        
Subjt:  MVQKVLEGAFPSHDGLDKEPEHGEHGQPPVLDLLHLQLGEGDGVVGQSEWVEVLTPRSSPPSEKIWAPALNQTGSLKSTFNHFSSTSGVMHP--------

Query:  ---------------------KAPNIAHLPWITCNSVRPYDGDG--------NYLKSSVLGEGLGIGGQPSSVPSIIAGELSVQVGGSLSGKRPQVLDSV
                             +  ++  L  IT   +R    +G        ++L+  + G+GL +  +PS VP+++ GEL+ QVG  L+ + PQVLD+V
Subjt:  ---------------------KAPNIAHLPWITCNSVRPYDGDG--------NYLKSSVLGEGLGIGGQPSSVPSIIAGELSVQVGGSLSGKRPQVLDSV

Query:  WSIP
         +IP
Subjt:  WSIP

A0A3B5Z6C6 Uncharacterized protein8.9e-1733.33Show/hide
Query:  MVQKVLEGAFPSHDGLDKEPEHGEHGQPPVLDLLHLQLGEGDGVVGQSEWVEVLTP-----RSSPPSEKIWAPALNQTGSLKSTFNHFSST---------
        +V++VL+ A    D LD+EP+HGEHG+  +LDLLHL+L EGD VVG++E VEVL         +   E I A   +Q         H             
Subjt:  MVQKVLEGAFPSHDGLDKEPEHGEHGQPPVLDLLHLQLGEGDGVVGQSEWVEVLTP-----RSSPPSEKIWAPALNQTGSLKSTFNHFSST---------

Query:  -----------------SGVMHPKA-PNIAHLPWITCNSVRPYDGDGNYLKSSVLGEGLGIGGQPSSVPSIIAGELSVQVGGSLSGKRPQVLDSVWSIPQ
                          G++   A P + HL      S        ++L+  V  E L +GG+P  VP+++A EL+VQVG  L  +  QVLD+V ++PQ
Subjt:  -----------------SGVMHPKA-PNIAHLPWITCNSVRPYDGDGNYLKSSVLGEGLGIGGQPSSVPSIIAGELSVQVGGSLSGKRPQVLDSVWSIPQ

Query:  FISL
         ++L
Subjt:  FISL

A0A3L6T734 Uncharacterized protein7.5e-1634.34Show/hide
Query:  MVQKVLEGAFPSHDGLDKEPEHGEHGQPPVLDLLHLQLGEGDGVVGQSEWVEVL--TPRSSPPSEKIWAPALNQTGSLKSTFN----------HFSSTSG
        +V +VLE A    DGLD+E EHGEHG+  VL+LL L+LG+G GVVGQ+E VE      R    +E+    A+   G+ +                +  + 
Subjt:  MVQKVLEGAFPSHDGLDKEPEHGEHGQPPVLDLLHLQLGEGDGVVGQSEWVEVL--TPRSSPPSEKIWAPALNQTGSLKSTFN----------HFSSTSG

Query:  VMHP----------KAPNIAHLPWITCNSV------RPYDGDGNY--LKSSVLGEGLGIGGQPSSVPSIIAGELSVQVGGSLSGKRPQVLDSVWSIPQ
        V+ P          +   +A L  +    +      R   G      L+ +VLGEGLG+ GQP  VP+++AGEL+ QV   L+G+  +VLD+V ++P+
Subjt:  VMHP----------KAPNIAHLPWITCNSV------RPYDGDGNY--LKSSVLGEGLGIGGQPSSVPSIIAGELSVQVGGSLSGKRPQVLDSVWSIPQ

C4J6D3 Uncharacterized protein1.6e-1834.48Show/hide
Query:  MVQKVLEGAFPSHDGLDKEPEHGEHGQPPVLDLLHLQLGEGDGVVGQSEWVEVLTP-----RSSPPSEKIWAPALNQT----------------------
        +V++VLEG     DGLD+E EHGEHG+  VLDLL L+LGEGDGVVG+++ VEVL         +   E + A AL++                       
Subjt:  MVQKVLEGAFPSHDGLDKEPEHGEHGQPPVLDLLHLQLGEGDGVVGQSEWVEVLTP-----RSSPPSEKIWAPALNQT----------------------

Query:  ----GSLKSTFNHFSSTSGVMHPKA-PNIAHLPWITCNSVRPYDGDGNYLKSSVLGEGLGIGGQPSSVPSIIAGELSVQVGGSLSGKRPQVLDSVWSIPQ
             +L+          G++   A P + HL        +      ++L+  V  E L + GQP  VP+++AGEL+ QV G L G+  QVLD+V ++PQ
Subjt:  ----GSLKSTFNHFSSTSGVMHPKA-PNIAHLPWITCNSVRPYDGDGNYLKSSVLGEGLGIGGQPSSVPSIIAGELSVQVGGSLSGKRPQVLDSVWSIPQ

Query:  FIS
         ++
Subjt:  FIS

T1N1P0 Uncharacterized protein1.3e-1532.35Show/hide
Query:  MVQKVLEGAFPSHDGLDKEPEHGEHGQPPVLDLLHLQLGEGDGVVGQSEWVEVLTP-----RSSPPSEKIWAPALNQTGSLKSTFNHFSST---------
        +V++VL+ A    D LD+EP+H EHG+  + DLLHL+L EGD VVG++E VEVL         +   E + A   N+T        H             
Subjt:  MVQKVLEGAFPSHDGLDKEPEHGEHGQPPVLDLLHLQLGEGDGVVGQSEWVEVLTP-----RSSPPSEKIWAPALNQTGSLKSTFNHFSST---------

Query:  -----------------SGVMHPKA-PNIAHLPWITCNSVRPYDGDGNYLKSSVLGEGLGIGGQPSSVPSIIAGELSVQVGGSLSGKRPQVLDSVWSIPQ
                          G++   A P + HL      S +      ++L+  V  E L +G +P  VP+++AGEL+VQV   L G+  QVLD+V ++PQ
Subjt:  -----------------SGVMHPKA-PNIAHLPWITCNSVRPYDGDGNYLKSSVLGEGLGIGGQPSSVPSIIAGELSVQVGGSLSGKRPQVLDSVWSIPQ

Query:  FISL
         ++L
Subjt:  FISL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCCAGAAGGTTCTCGAGGGGGCCTTTCCCAGTCACGATGGCCTGGACAAAGAACCCGAACATGGAGAACATGGCCAGCCGCCCGTTCTTGATCTCCTTCACCTTCA
GCTCGGCGAAGGTGACGGGGTCGTCGGCCAGTCCGAGTGGGTCGAAGTACTGACCCCCCGGTCGAGCCCCCCTTCTGAGAAGATCTGGGCTCCGGCCTTGAACCAGACTG
GCTCCTTGAAGTCCACTTTCAACCATTTTTCTAGCACCTCTGGTGTTATGCACCCGAAGGCTCCCAACATCGCCCACCTCCCGTGGATTACCTGCAATTCCGTTCGACCA
TATGATGGGGATGGGAATTACCTCAAGAGCTCTGTTCTTGGCGAAGGCCTCGGGATCGGCGGACAACCCAGCAGTGTCCCATCCATAATCGCCGGGGAACTCTCCGTTCA
AGTAGGAGGGAGTCTGAGCGGAAAACGGCCCCAAGTACTTGACTCTGTCTGGTCCATACCACAGTTCATTTCCCTATTCAAAATTGAAAAAAAGAAGAAAACATCATCAA
TTTCAATACTCCATAAGACAAAAAGGAAGCAAAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTCCAGAAGGTTCTCGAGGGGGCCTTTCCCAGTCACGATGGCCTGGACAAAGAACCCGAACATGGAGAACATGGCCAGCCGCCCGTTCTTGATCTCCTTCACCTTCA
GCTCGGCGAAGGTGACGGGGTCGTCGGCCAGTCCGAGTGGGTCGAAGTACTGACCCCCCGGTCGAGCCCCCCTTCTGAGAAGATCTGGGCTCCGGCCTTGAACCAGACTG
GCTCCTTGAAGTCCACTTTCAACCATTTTTCTAGCACCTCTGGTGTTATGCACCCGAAGGCTCCCAACATCGCCCACCTCCCGTGGATTACCTGCAATTCCGTTCGACCA
TATGATGGGGATGGGAATTACCTCAAGAGCTCTGTTCTTGGCGAAGGCCTCGGGATCGGCGGACAACCCAGCAGTGTCCCATCCATAATCGCCGGGGAACTCTCCGTTCA
AGTAGGAGGGAGTCTGAGCGGAAAACGGCCCCAAGTACTTGACTCTGTCTGGTCCATACCACAGTTCATTTCCCTATTCAAAATTGAAAAAAAGAAGAAAACATCATCAA
TTTCAATACTCCATAAGACAAAAAGGAAGCAAAGATAG
Protein sequenceShow/hide protein sequence
MVQKVLEGAFPSHDGLDKEPEHGEHGQPPVLDLLHLQLGEGDGVVGQSEWVEVLTPRSSPPSEKIWAPALNQTGSLKSTFNHFSSTSGVMHPKAPNIAHLPWITCNSVRP
YDGDGNYLKSSVLGEGLGIGGQPSSVPSIIAGELSVQVGGSLSGKRPQVLDSVWSIPQFISLFKIEKKKKTSSISILHKTKRKQR