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CmoCh04G011080 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G011080
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionTryptophanyl-tRNA synthetase
Genome locationCmo_Chr04:5647317..5650640
RNA-Seq ExpressionCmoCh04G011080
SyntenyCmoCh04G011080
Gene Ontology termsGO:0006436 - tryptophanyl-tRNA aminoacylation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0004830 - tryptophan-tRNA ligase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022942418.1 tryptophan--tRNA ligase, cytoplasmic-like [Cucurbita moschata]5.9e-4997.12Show/hide
Query:  LANLINKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPLP
        + N INKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPLP
Subjt:  LANLINKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPLP

Query:  NMFD
        NMFD
Subjt:  NMFD

XP_022942706.1 tryptophan--tRNA ligase, cytoplasmic [Cucurbita moschata]1.9e-4792.31Show/hide
Query:  LANLINKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPLP
        + N +N+YAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFL+DDAELEHITKEYGAGRMLTGEVKQRLIQVLTE+VERHRRARA+VTDEMVDAFMAVRPLP
Subjt:  LANLINKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPLP

Query:  NMFD
        NMFD
Subjt:  NMFD

XP_022990236.1 tryptophan--tRNA ligase, cytoplasmic-like [Cucurbita maxima]1.3e-4896.15Show/hide
Query:  LANLINKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPLP
        + N INKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFL+DDAELEHITKEYGAGRMLTGEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPLP
Subjt:  LANLINKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPLP

Query:  NMFD
        NMFD
Subjt:  NMFD

XP_023537341.1 tryptophan--tRNA ligase, cytoplasmic-like [Cucurbita pepo subsp. pepo]1.3e-4896.15Show/hide
Query:  LANLINKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPLP
        + N INKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFL+DDAELEHITKEYGAGRMLTGEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPLP
Subjt:  LANLINKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPLP

Query:  NMFD
        NMFD
Subjt:  NMFD

XP_038892706.1 tryptophan--tRNA ligase, cytoplasmic [Benincasa hispida]2.9e-4895.19Show/hide
Query:  LANLINKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPLP
        + N INKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFL+DDAELEHITKEYGAGRMLTGEVKQRLIQVLTE+VERHRRARAAVTDEMVDAFMAVRPLP
Subjt:  LANLINKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPLP

Query:  NMFD
        NMFD
Subjt:  NMFD

TrEMBL top hitse value%identityAlignment
A0A0A0KJ91 Tryptophanyl-tRNA synthetase5.4e-4894.23Show/hide
Query:  LANLINKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPLP
        + N INKYAFSGGQDSIEKHRLYGANLEVDIP KYLNFFL+DDAELEHITKEYGAGRMLTGEVKQRLIQVLTE+VERHRRARAAVTDEMVDAFMAVRPLP
Subjt:  LANLINKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPLP

Query:  NMFD
        NMFD
Subjt:  NMFD

A0A6J1FPN8 Tryptophanyl-tRNA synthetase9.1e-4892.31Show/hide
Query:  LANLINKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPLP
        + N +N+YAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFL+DDAELEHITKEYGAGRMLTGEVKQRLIQVLTE+VERHRRARA+VTDEMVDAFMAVRPLP
Subjt:  LANLINKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPLP

Query:  NMFD
        NMFD
Subjt:  NMFD

A0A6J1FUS5 Tryptophanyl-tRNA synthetase2.8e-4997.12Show/hide
Query:  LANLINKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPLP
        + N INKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPLP
Subjt:  LANLINKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPLP

Query:  NMFD
        NMFD
Subjt:  NMFD

A0A6J1JME0 Tryptophanyl-tRNA synthetase6.3e-4996.15Show/hide
Query:  LANLINKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPLP
        + N INKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFL+DDAELEHITKEYGAGRMLTGEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPLP
Subjt:  LANLINKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPLP

Query:  NMFD
        NMFD
Subjt:  NMFD

A0A6J1K994 Tryptophanyl-tRNA synthetase9.1e-4892.31Show/hide
Query:  LANLINKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPLP
        + N +N+YAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFL+DDAELEHITKEYGAGRMLTGEVKQRLIQVLTE+VERHRRARA+VTDEMVDAFMAVRPLP
Subjt:  LANLINKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPLP

Query:  NMFD
        NMFD
Subjt:  NMFD

SwissProt top hitse value%identityAlignment
P23381 Tryptophan--tRNA ligase, cytoplasmic2.0e-2353.68Show/hide
Query:  INKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPL
        +NK+AFSGG+D+IE+HR +G N +VD+   YL FFLEDD +LE I K+Y +G MLTGE+K+ LI+VL  ++  H+  R  VTDE+V  FM  R L
Subjt:  INKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPL

P23612 Tryptophan--tRNA ligase, cytoplasmic4.0e-2455.79Show/hide
Query:  INKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPL
        +NK+AFSGG+D+IE+HR +G N +VD+   YL FFLEDD +LE I K+Y +G MLTGE+K+ LI VL  +V  H+  R  VTDEMV  FM  R L
Subjt:  INKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPL

Q5R4J1 Tryptophan--tRNA ligase, cytoplasmic2.0e-2353.68Show/hide
Query:  INKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPL
        +NK+AFSGG+D+IE+HR +G N +VD+   YL FFLEDD +LE I K+Y +G MLTGE+K+ LI+VL  ++  H+  R  VTDE+V  FM  R L
Subjt:  INKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPL

Q6P7B0 Tryptophan--tRNA ligase, cytoplasmic1.2e-2354.74Show/hide
Query:  INKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPL
        +NK+AFSGG+D++E+HR +G N EVD+   YL FFLEDD  LE I K+Y +G MLTGE+K+ LI VL  ++  H+  R AVT+E V  FMA R L
Subjt:  INKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPL

Q9SR15 Tryptophan--tRNA ligase, cytoplasmic5.3e-4584.62Show/hide
Query:  LANLINKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPLP
        + N IN+YAFSGGQDSIEKHR  GANLEVDIP+KYL+FFLEDD+ELEHI KEYG GRMLTGEVK+RL +VLTEIVERHRRARAAVTDEMVDAFMAVRPLP
Subjt:  LANLINKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPLP

Query:  NMFD
        +MF+
Subjt:  NMFD

Arabidopsis top hitse value%identityAlignment
AT3G04600.1 Nucleotidylyl transferase superfamily protein3.8e-4684.62Show/hide
Query:  LANLINKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPLP
        + N IN+YAFSGGQDSIEKHR  GANLEVDIP+KYL+FFLEDD+ELEHI KEYG GRMLTGEVK+RL +VLTEIVERHRRARAAVTDEMVDAFMAVRPLP
Subjt:  LANLINKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPLP

Query:  NMFD
        +MF+
Subjt:  NMFD

AT3G04600.2 Nucleotidylyl transferase superfamily protein3.8e-4684.62Show/hide
Query:  LANLINKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPLP
        + N IN+YAFSGGQDSIEKHR  GANLEVDIP+KYL+FFLEDD+ELEHI KEYG GRMLTGEVK+RL +VLTEIVERHRRARAAVTDEMVDAFMAVRPLP
Subjt:  LANLINKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPLP

Query:  NMFD
        +MF+
Subjt:  NMFD

AT3G04600.3 Nucleotidylyl transferase superfamily protein3.8e-4684.62Show/hide
Query:  LANLINKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPLP
        + N IN+YAFSGGQDSIEKHR  GANLEVDIP+KYL+FFLEDD+ELEHI KEYG GRMLTGEVK+RL +VLTEIVERHRRARAAVTDEMVDAFMAVRPLP
Subjt:  LANLINKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPLP

Query:  NMFD
        +MF+
Subjt:  NMFD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATATGCTTGCCAATCTTATAAACAAATATGCGTTCTCTGGTGGGCAAGATTCCATAGAAAAGCACAGATTATATGGTGCTAATCTCGAGGTGGATATACCCATCAA
ATATTTGAACTTTTTCCTGGAAGACGATGCTGAACTTGAACATATAACAAAGGAGTATGGTGCTGGACGCATGCTAACAGGTGAAGTGAAACAGCGCCTTATACAAGTAT
TAACTGAAATTGTAGAAAGACATCGTAGAGCTCGGGCTGCTGTGACAGATGAGATGGTTGATGCGTTTATGGCAGTCAGACCCCTTCCTAACATGTTCGACTGA
mRNA sequenceShow/hide mRNA sequence
ATGTATATGCTTGCCAATCTTATAAACAAATATGCGTTCTCTGGTGGGCAAGATTCCATAGAAAAGCACAGATTATATGGTGCTAATCTCGAGGTGGATATACCCATCAA
ATATTTGAACTTTTTCCTGGAAGACGATGCTGAACTTGAACATATAACAAAGGAGTATGGTGCTGGACGCATGCTAACAGGTGAAGTGAAACAGCGCCTTATACAAGTAT
TAACTGAAATTGTAGAAAGACATCGTAGAGCTCGGGCTGCTGTGACAGATGAGATGGTTGATGCGTTTATGGCAGTCAGACCCCTTCCTAACATGTTCGACTGAAGAAGT
CATTCTTTGAACCACTATTTATCATTGAATTCAGGGGCCTACATTGGATACAACCAATGGGGCAGGGCGGGGCGGGGGCTCGTGCCATGACTCTCTACTCAGATTATTTA
TCAGTCAATCCCCCAAATGTATCTGAACTTAAAAAAACCAAGAAAACTATGTTTTGTAGAACGCTGTTAGGTTAGAGATTTTCAAGTCCAAAGCTTGATGAGTGAAGATG
GTCAAATTGAGATGACTTGTAGTAGGTGATATTTGTAGGTCTTTGTTTTGTTTTGTCTTGTTTTTTCTTTTTTAAAATTAAAATTTTGACTATTCCTACGGTTTTTATTC
AAACAAGAAACTACCTACTCTGGTATTCAAATTTTGTCTTATTTTCTCACTTCATTTATTTTATGTTAAGTTTTAATAATTGTATTAAAAAAAGTCGTAAATAG
Protein sequenceShow/hide protein sequence
MYMLANLINKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPLPNMFD