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CmoCh04G011860 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G011860
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionElf4 domain-containing protein
Genome locationCmo_Chr04:6065953..6066342
RNA-Seq ExpressionCmoCh04G011860
SyntenyCmoCh04G011860
Gene Ontology termsGO:0000122 - negative regulation of transcription by RNA polymerase II (biological process)
GO:0009649 - entrainment of circadian clock (biological process)
GO:0009909 - regulation of flower development (biological process)
GO:0010017 - red or far-red light signaling pathway (biological process)
GO:0010114 - response to red light (biological process)
GO:0042753 - positive regulation of circadian rhythm (biological process)
GO:0048573 - photoperiodism, flowering (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005667 - transcription factor complex (cellular component)
GO:0042803 - protein homodimerization activity (molecular function)
InterPro domainsIPR009741 - Protein EARLY FLOWERING 4 domain
IPR040462 - Protein EARLY FLOWERING 4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031907.1 protein EARLY FLOWERING 4 [Cucumis melo var. makuwa]2.0e-5187.6Show/hide
Query:  MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
        MAD NPRRKSK KPSATTTTTTTTTTSDD  HD FPDE DA+VWASFDQTFRQVQSVLDRNR LIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
Subjt:  MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSSGFNNNKSRNGKRGSSNPDA
        YSDFSSDFS+ F+N+K R+GKRG++NPDA
Subjt:  YSDFSSDFSSGFNNNKSRNGKRGSSNPDA

KAG6600929.1 Protein EARLY FLOWERING 4, partial [Cucurbita argyrosperma subsp. sororia]6.2e-6199.22Show/hide
Query:  MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
        MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
Subjt:  MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSSGFNNNKSRNGKRGSSNPDA
        YSDFSSDFSSGFNN+KSRNGKRGSSNPDA
Subjt:  YSDFSSDFSSGFNNNKSRNGKRGSSNPDA

XP_008463236.2 PREDICTED: uncharacterized protein LOC103501440 [Cucumis melo]2.0e-5187.6Show/hide
Query:  MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
        MAD NPRRKSK KPSATTTTTTTTTTSDD  HD FPDE DA+VWASFDQTFRQVQSVLDRNR LIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
Subjt:  MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSSGFNNNKSRNGKRGSSNPDA
        YSDFSSDFS+ F+N+K R+GKRG++NPDA
Subjt:  YSDFSSDFSSGFNNNKSRNGKRGSSNPDA

XP_022956860.1 protein EARLY FLOWERING 4-like [Cucurbita moschata]1.6e-61100Show/hide
Query:  MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
        MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
Subjt:  MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSSGFNNNKSRNGKRGSSNPDA
        YSDFSSDFSSGFNNNKSRNGKRGSSNPDA
Subjt:  YSDFSSDFSSGFNNNKSRNGKRGSSNPDA

XP_022976942.1 protein EARLY FLOWERING 4-like [Cucurbita maxima]7.5e-5996.9Show/hide
Query:  MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
        MA+IN RRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECD QVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
Subjt:  MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSSGFNNNKSRNGKRGSSNPDA
        YSDFSSDFSSGFNN+KSRNGKRGSSNPDA
Subjt:  YSDFSSDFSSGFNNNKSRNGKRGSSNPDA

TrEMBL top hitse value%identityAlignment
A0A0A0KM35 Elf4 domain-containing protein1.8e-5086.05Show/hide
Query:  MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
        MAD NPRRKSK KPSATTTTTTTTTTSDD  H  FPDE D +VWASFDQTFRQVQSVLDRNR LIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
Subjt:  MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSSGFNNNKSRNGKRGSSNPDA
        YSDFSSDFS+ F+N+K R GKRG++NPDA
Subjt:  YSDFSSDFSSGFNNNKSRNGKRGSSNPDA

A0A1S3CIT1 uncharacterized protein LOC1035014409.6e-5287.6Show/hide
Query:  MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
        MAD NPRRKSK KPSATTTTTTTTTTSDD  HD FPDE DA+VWASFDQTFRQVQSVLDRNR LIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
Subjt:  MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSSGFNNNKSRNGKRGSSNPDA
        YSDFSSDFS+ F+N+K R+GKRG++NPDA
Subjt:  YSDFSSDFSSGFNNNKSRNGKRGSSNPDA

A0A5A7SR92 Protein EARLY FLOWERING 49.6e-5287.6Show/hide
Query:  MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
        MAD NPRRKSK KPSATTTTTTTTTTSDD  HD FPDE DA+VWASFDQTFRQVQSVLDRNR LIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
Subjt:  MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSSGFNNNKSRNGKRGSSNPDA
        YSDFSSDFS+ F+N+K R+GKRG++NPDA
Subjt:  YSDFSSDFSSGFNNNKSRNGKRGSSNPDA

A0A6J1GYX8 protein EARLY FLOWERING 4-like7.9e-62100Show/hide
Query:  MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
        MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
Subjt:  MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSSGFNNNKSRNGKRGSSNPDA
        YSDFSSDFSSGFNNNKSRNGKRGSSNPDA
Subjt:  YSDFSSDFSSGFNNNKSRNGKRGSSNPDA

A0A6J1IH33 protein EARLY FLOWERING 4-like3.6e-5996.9Show/hide
Query:  MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
        MA+IN RRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECD QVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
Subjt:  MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSSGFNNNKSRNGKRGSSNPDA
        YSDFSSDFSSGFNN+KSRNGKRGSSNPDA
Subjt:  YSDFSSDFSSGFNNNKSRNGKRGSSNPDA

SwissProt top hitse value%identityAlignment
O04211 Protein EARLY FLOWERING 47.7e-2262.22Show/hide
Query:  DAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGFNNNKSRNGKRGSSNPDA
        D  +W + D+ FRQVQSVLDRNR LIQQVN+NHQSR+  NM  NVALIQELNGNISKVV+MYSD ++ FSSGF+  K+ +   G++   A
Subjt:  DAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGFNNNKSRNGKRGSSNPDA

O80877 Protein ELF4-LIKE 11.3e-1348.84Show/hide
Query:  DAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGFNNNKSRNGKRGSS
        D +VW +    F++ Q  LD+NR LIQ+VNENH SRIP N+  NV LI E+NGNIS+V+ +YSD S +F+  F+  + R  K G +
Subjt:  DAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGFNNNKSRNGKRGSS

Q570U6 Protein ELF4-LIKE 43.2e-1246.15Show/hide
Query:  GFPD--ECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS
        GF D    D ++  SF ++F  VQ +LD+NR+LI ++N+NH+S+ P N+  NV LI+ELN NI +V S+Y D S  F+
Subjt:  GFPD--ECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS

Q8S8F5 Protein ELF4-LIKE 38.5e-1339.33Show/hide
Query:  ECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGFNNNKSRNGKRGSSN
        + D ++  +F+++F QVQ++LD NR+LI ++N+NH+S+IP N+  NV LI+ELN N+ +V  +Y D S++FS     +   +   G  N
Subjt:  ECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGFNNNKSRNGKRGSSN

Q94BS8 Protein ELF4-LIKE 21.8e-1041.25Show/hide
Query:  HDGFPD--ECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS
        + GF +  + D ++  +F ++F QVQ +LD+NR+LI ++N+NH+S+   ++  NV LI+ELN NI  V S+Y D S  F+
Subjt:  HDGFPD--ECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS

Arabidopsis top hitse value%identityAlignment
AT1G17455.1 ELF4-like 42.3e-1346.15Show/hide
Query:  GFPD--ECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS
        GF D    D ++  SF ++F  VQ +LD+NR+LI ++N+NH+S+ P N+  NV LI+ELN NI +V S+Y D S  F+
Subjt:  GFPD--ECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS

AT1G17455.2 ELF4-like 42.3e-1346.15Show/hide
Query:  GFPD--ECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS
        GF D    D ++  SF ++F  VQ +LD+NR+LI ++N+NH+S+ P N+  NV LI+ELN NI +V S+Y D S  F+
Subjt:  GFPD--ECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS

AT2G06255.1 ELF4-like 36.0e-1439.33Show/hide
Query:  ECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGFNNNKSRNGKRGSSN
        + D ++  +F+++F QVQ++LD NR+LI ++N+NH+S+IP N+  NV LI+ELN N+ +V  +Y D S++FS     +   +   G  N
Subjt:  ECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGFNNNKSRNGKRGSSN

AT2G29950.1 ELF4-like 19.3e-1548.84Show/hide
Query:  DAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGFNNNKSRNGKRGSS
        D +VW +    F++ Q  LD+NR LIQ+VNENH SRIP N+  NV LI E+NGNIS+V+ +YSD S +F+  F+  + R  K G +
Subjt:  DAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGFNNNKSRNGKRGSS

AT2G40080.1 Protein of unknown function (DUF1313)5.4e-2362.22Show/hide
Query:  DAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGFNNNKSRNGKRGSSNPDA
        D  +W + D+ FRQVQSVLDRNR LIQQVN+NHQSR+  NM  NVALIQELNGNISKVV+MYSD ++ FSSGF+  K+ +   G++   A
Subjt:  DAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGFNNNKSRNGKRGSSNPDA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGATATCAACCCCCGCCGCAAATCCAAAACCAAGCCTTCAGCCACCACCACCACCACAACCACAACCACCACCAGCGACGACGGCCGACACGACGGCTTCCCTGA
CGAATGCGACGCCCAGGTGTGGGCCTCCTTCGACCAGACCTTCCGCCAGGTCCAGTCAGTGCTGGACCGTAACAGAGTGCTGATTCAACAGGTGAACGAGAACCACCAGT
CTCGAATTCCCAGCAACATGGTGGACAACGTGGCTCTCATCCAAGAACTCAATGGGAACATCTCTAAAGTTGTCTCCATGTACTCCGATTTCTCCTCTGACTTCTCCTCT
GGGTTCAATAACAACAAATCCAGAAATGGCAAAAGAGGAAGCAGCAACCCAGATGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGATATCAACCCCCGCCGCAAATCCAAAACCAAGCCTTCAGCCACCACCACCACCACAACCACAACCACCACCAGCGACGACGGCCGACACGACGGCTTCCCTGA
CGAATGCGACGCCCAGGTGTGGGCCTCCTTCGACCAGACCTTCCGCCAGGTCCAGTCAGTGCTGGACCGTAACAGAGTGCTGATTCAACAGGTGAACGAGAACCACCAGT
CTCGAATTCCCAGCAACATGGTGGACAACGTGGCTCTCATCCAAGAACTCAATGGGAACATCTCTAAAGTTGTCTCCATGTACTCCGATTTCTCCTCTGACTTCTCCTCT
GGGTTCAATAACAACAAATCCAGAAATGGCAAAAGAGGAAGCAGCAACCCAGATGCTTGA
Protein sequenceShow/hide protein sequence
MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSS
GFNNNKSRNGKRGSSNPDA