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CmoCh04G012420 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G012420
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPentatricopeptide repeat-containing protein, chloroplastic
Genome locationCmo_Chr04:6301718..6303872
RNA-Seq ExpressionCmoCh04G012420
SyntenyCmoCh04G012420
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OAY63926.1 Pentatricopeptide repeat-containing protein, chloroplastic [Ananas comosus]5.3e-3753.64Show/hide
Query:  EGVDQLDNVLIGDFVSAENTFADTDTVLSSRSPVEFLHTTVTNERSVESGEIVTSDDDWDSRVILLVVHSRELDVGRVVSDVHEGGVNHLIVDSVLSGAT
        EG+D+LD++L+G+ +S+E   A+T++VL  RSPVE LHT + NE  ++  E+++ D+D  +R++LLVVHSREL +  VV +VHE GV+HL+VD VL G T
Subjt:  EGVDQLDNVLIGDFVSAENTFADTDTVLSSRSPVEFLHTTVTNERSVESGEIVTSDDDWDSRVILLVVHSRELDVGRVVSDVHEGGVNHLIVDSVLSGAT

Query:  KTTCTSVQIIDEEARHFSLLDYVSRLTVPLTDQLSRLSGVATFQLSGAHHD
         ++ + ++IIDEE  H  LLD VS LTV L+DQL RLS +  FQLSGAHHD
Subjt:  KTTCTSVQIIDEEARHFSLLDYVSRLTVPLTDQLSRLSGVATFQLSGAHHD

OIF80114.1 hypothetical protein A7M47_17960 [Acinetobacter baumannii]9.1e-4563.46Show/hide
Query:  DGLAWEGVDQLDNVLIGDFVSAENTFADTDTVLSSRSPVEFLHTTVTNERSVESGEIVTSDDDWDSRVILLVVHSRELDVGRVVSDVHEGGVNHLIVDSV
        DGL  EGVD+L N L+GD V AE+T ADTD VL+  SPV+ LHTTVT+E  V+ GE+V  DDD  + V+LLVVH+ EL VG VV DVHEGGV+HL+VD V
Subjt:  DGLAWEGVDQLDNVLIGDFVSAENTFADTDTVLSSRSPVEFLHTTVTNERSVESGEIVTSDDDWDSRVILLVVHSRELDVGRVVSDVHEGGVNHLIVDSV

Query:  LSGATKTTCTSVQIIDEEARHFSLLDYVSRLTVPLTDQLSRLSGVATFQLSGAHHD
        L GA   T T V+I+DEEA H +LLD V  LTVPL D+L  LSGVA  QLSGAHHD
Subjt:  LSGATKTTCTSVQIIDEEARHFSLLDYVSRLTVPLTDQLSRLSGVATFQLSGAHHD

PON33615.1 hypothetical protein PanWU01x14_351400, partial [Parasponia andersonii]9.4e-3451.05Show/hide
Query:  VLIGDFVSAENTFADTDTVLSSRSPVEFLHTTVTNERSVESGEIVTSDDDWDSRVILLVVHSRELDVGRVVSDVHEGGVNHLIVDSVLSGATKTTCTSVQ
        VLI   VS+E++ ADT+ +   R PVE  HT +TNER VE GE++  D D  + +  LVVHSREL +G +VS+VHEG ++HL++D VL G++K T + ++
Subjt:  VLIGDFVSAENTFADTDTVLSSRSPVEFLHTTVTNERSVESGEIVTSDDDWDSRVILLVVHSRELDVGRVVSDVHEGGVNHLIVDSVLSGATKTTCTSVQ

Query:  IIDEEARHFSLLDYVSRLTVPLTDQLSRLSGVATFQLSGAHHD
        ++DE+A HF   DYV  LTVPL DQL  LSG++TFQ S  HH+
Subjt:  IIDEEARHFSLLDYVSRLTVPLTDQLSRLSGVATFQLSGAHHD

PON90828.1 hypothetical protein TorRG33x02_134660, partial [Trema orientale]3.1e-3754.17Show/hide
Query:  VLIGDFVSAENTFADTDTVLSSRSPVEFLHTTVTNERSVESGEIVTSDDDWDSRVILLVVHSRELDVGRVVSDVHEGGVNHLIVDSVLSGATKTTCTSVQ
        VL+   VS+E++ ADT+ +   R PVE  HT +TNER VE GE+++ D D D+ +  LVVHSREL +G +VS+VHEG ++HL++DSVL G++K T + ++
Subjt:  VLIGDFVSAENTFADTDTVLSSRSPVEFLHTTVTNERSVESGEIVTSDDDWDSRVILLVVHSRELDVGRVVSDVHEGGVNHLIVDSVLSGATKTTCTSVQ

Query:  IIDEEARHFSLLDYVSRLTVPLTDQLSRLSGVATFQLSGAHHDW
        IIDEEA HF   DYV  LTVPL DQL  LSG++TFQ S  HH+W
Subjt:  IIDEEARHFSLLDYVSRLTVPLTDQLSRLSGVATFQLSGAHHDW

WP_215809667.1 hypothetical protein, partial [Vibrio anguillarum]8.8e-2451.92Show/hide
Query:  DGLAWEGVDQLDNVLIGDFVSAENTFADTDTVLSSRSPVEFLHTTVTNERSVESGEIVTSDDDWDSRVILLVVHSRELDVGRVVSDVHEGGVNHLIVDSV
        D LAWEG+++LD+  +G+ V  E T A+T+TVLS   PVEF HTT+TNERS++SGE+++S+ + ++ ++LLVVH+RE+ +  ++SDVH+  ++HLIVD +
Subjt:  DGLAWEGVDQLDNVLIGDFVSAENTFADTDTVLSSRSPVEFLHTTVTNERSVESGEIVTSDDDWDSRVILLVVHSRELDVGRVVSDVHEGGVNHLIVDSV

Query:  LSGA
        LSGA
Subjt:  LSGA

TrEMBL top hitse value%identityAlignment
A0A103Y6F2 Uncharacterized protein5.6e-2450.86Show/hide
Query:  DFVSAENTFADTDTVLSSRSPVEFLHTTVTNERSVESGEIVTSDDDWDSRVILLVVHSRELDVGRVVSDVHEGGVNHLIVDSVLSGATKTTCTSVQIIDE
        + VS+ENT  +T++V +SR PVE LHTTVTN+R ++S ++VT D++  SRV+L +VH+R+L+VG V+S+VH+  VNHL+V SVLS +   T T ++I+DE
Subjt:  DFVSAENTFADTDTVLSSRSPVEFLHTTVTNERSVESGEIVTSDDDWDSRVILLVVHSRELDVGRVVSDVHEGGVNHLIVDSVLSGATKTTCTSVQIIDE

Query:  EARHFSLLDYVSRLTV
        +  HF L DY+  L V
Subjt:  EARHFSLLDYVSRLTV

A0A199UGU0 Pentatricopeptide repeat-containing protein, chloroplastic2.6e-3753.64Show/hide
Query:  EGVDQLDNVLIGDFVSAENTFADTDTVLSSRSPVEFLHTTVTNERSVESGEIVTSDDDWDSRVILLVVHSRELDVGRVVSDVHEGGVNHLIVDSVLSGAT
        EG+D+LD++L+G+ +S+E   A+T++VL  RSPVE LHT + NE  ++  E+++ D+D  +R++LLVVHSREL +  VV +VHE GV+HL+VD VL G T
Subjt:  EGVDQLDNVLIGDFVSAENTFADTDTVLSSRSPVEFLHTTVTNERSVESGEIVTSDDDWDSRVILLVVHSRELDVGRVVSDVHEGGVNHLIVDSVLSGAT

Query:  KTTCTSVQIIDEEARHFSLLDYVSRLTVPLTDQLSRLSGVATFQLSGAHHD
         ++ + ++IIDEE  H  LLD VS LTV L+DQL RLS +  FQLSGAHHD
Subjt:  KTTCTSVQIIDEEARHFSLLDYVSRLTVPLTDQLSRLSGVATFQLSGAHHD

A0A2P5AAQ3 Uncharacterized protein (Fragment)4.6e-3451.05Show/hide
Query:  VLIGDFVSAENTFADTDTVLSSRSPVEFLHTTVTNERSVESGEIVTSDDDWDSRVILLVVHSRELDVGRVVSDVHEGGVNHLIVDSVLSGATKTTCTSVQ
        VLI   VS+E++ ADT+ +   R PVE  HT +TNER VE GE++  D D  + +  LVVHSREL +G +VS+VHEG ++HL++D VL G++K T + ++
Subjt:  VLIGDFVSAENTFADTDTVLSSRSPVEFLHTTVTNERSVESGEIVTSDDDWDSRVILLVVHSRELDVGRVVSDVHEGGVNHLIVDSVLSGATKTTCTSVQ

Query:  IIDEEARHFSLLDYVSRLTVPLTDQLSRLSGVATFQLSGAHHD
        ++DE+A HF   DYV  LTVPL DQL  LSG++TFQ S  HH+
Subjt:  IIDEEARHFSLLDYVSRLTVPLTDQLSRLSGVATFQLSGAHHD

A0A2P5EZ62 Uncharacterized protein (Fragment)1.5e-3754.17Show/hide
Query:  VLIGDFVSAENTFADTDTVLSSRSPVEFLHTTVTNERSVESGEIVTSDDDWDSRVILLVVHSRELDVGRVVSDVHEGGVNHLIVDSVLSGATKTTCTSVQ
        VL+   VS+E++ ADT+ +   R PVE  HT +TNER VE GE+++ D D D+ +  LVVHSREL +G +VS+VHEG ++HL++DSVL G++K T + ++
Subjt:  VLIGDFVSAENTFADTDTVLSSRSPVEFLHTTVTNERSVESGEIVTSDDDWDSRVILLVVHSRELDVGRVVSDVHEGGVNHLIVDSVLSGATKTTCTSVQ

Query:  IIDEEARHFSLLDYVSRLTVPLTDQLSRLSGVATFQLSGAHHDW
        IIDEEA HF   DYV  LTVPL DQL  LSG++TFQ S  HH+W
Subjt:  IIDEEARHFSLLDYVSRLTVPLTDQLSRLSGVATFQLSGAHHDW

A0A7U5ECV3 Uncharacterized protein4.3e-2451.92Show/hide
Query:  DGLAWEGVDQLDNVLIGDFVSAENTFADTDTVLSSRSPVEFLHTTVTNERSVESGEIVTSDDDWDSRVILLVVHSRELDVGRVVSDVHEGGVNHLIVDSV
        D LAWEG+++LD+  +G+ V  E T A+T+TVLS   PVEF HTT+TNERS++SGE+++S+ + ++ ++LLVVH+RE+ +  ++SDVH+  ++HLIVD +
Subjt:  DGLAWEGVDQLDNVLIGDFVSAENTFADTDTVLSSRSPVEFLHTTVTNERSVESGEIVTSDDDWDSRVILLVVHSRELDVGRVVSDVHEGGVNHLIVDSV

Query:  LSGA
        LSGA
Subjt:  LSGA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAAAGCTGATGGCTCTGCCCCTAAAGAGAAAGAGATAAGAAAGTTTAGTTTTGTTTCTTCTGATGATAAACTGACCGATGGATTGGCCTGGGAAGGTGTCGACCA
ACTTGACAATGTCCTCATCGGCGACTTTGTCAGTGCGGAAAATACCTTTGCAGACACCGATACGGTCCTCTCTAGTAGGAGCCCAGTAGAATTTCTCCATACGACCGTCA
CGAATGAGAGGAGCGTAGAGAGTGGAGAAATCGTTACCAGTGACGATGATTGGGACTCGAGGGTTATCCTCCTTGTTGTACATTCCAGGGAGCTGGACGTTGGTCGGGTT
GTCAGCGATGTTCATGAGGGTGGCGTTAACCATCTGATTGTTGACAGTGTACTGAGTGGTGCCACCAAGACGACCTGCACCAGCGTCCAGATCATTGATGAAGAGGCAAG
ACATTTTTCCCTTCTTGATTATGTCAGCCGCCTCACGGTACCTTTGACGGATCAACTTAGCCGGCTCTCCGGCGTTGCCACTTTCCAGCTCTCCGGCGCTCATCATGATT
GGGCTGTGGCAACAAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGAACAAAGCTGATGGCTCTGCCCCTAAAGAGAAAGAGATAAGAAAGTTTAGTTTTGTTTCTTCTGATGATAAACTGACCGATGGATTGGCCTGGGAAGGTGTCGACCA
ACTTGACAATGTCCTCATCGGCGACTTTGTCAGTGCGGAAAATACCTTTGCAGACACCGATACGGTCCTCTCTAGTAGGAGCCCAGTAGAATTTCTCCATACGACCGTCA
CGAATGAGAGGAGCGTAGAGAGTGGAGAAATCGTTACCAGTGACGATGATTGGGACTCGAGGGTTATCCTCCTTGTTGTACATTCCAGGGAGCTGGACGTTGGTCGGGTT
GTCAGCGATGTTCATGAGGGTGGCGTTAACCATCTGATTGTTGACAGTGTACTGAGTGGTGCCACCAAGACGACCTGCACCAGCGTCCAGATCATTGATGAAGAGGCAAG
ACATTTTTCCCTTCTTGATTATGTCAGCCGCCTCACGGTACCTTTGACGGATCAACTTAGCCGGCTCTCCGGCGTTGCCACTTTCCAGCTCTCCGGCGCTCATCATGATT
GGGCTGTGGCAACAAAATAA
Protein sequenceShow/hide protein sequence
MNKADGSAPKEKEIRKFSFVSSDDKLTDGLAWEGVDQLDNVLIGDFVSAENTFADTDTVLSSRSPVEFLHTTVTNERSVESGEIVTSDDDWDSRVILLVVHSRELDVGRV
VSDVHEGGVNHLIVDSVLSGATKTTCTSVQIIDEEARHFSLLDYVSRLTVPLTDQLSRLSGVATFQLSGAHHDWAVATK