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CmoCh04G012770 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G012770
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionprotein gar2
Genome locationCmo_Chr04:6477834..6478202
RNA-Seq ExpressionCmoCh04G012770
SyntenyCmoCh04G012770
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601012.1 hypothetical protein SDJN03_06245, partial [Cucurbita argyrosperma subsp. sororia]2.6e-61100Show/hide
Query:  MDKETTGEFRGYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAVPKKGTERGGGEAAAAAEIETETHPETQAKPVPEMKEAETGLSSISGKIRRRTCYE
        MDKETTGEFRGYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAVPKKGTERGGGEAAAAAEIETETHPETQAKPVPEMKEAETGLSSISGKIRRRTCYE
Subjt:  MDKETTGEFRGYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAVPKKGTERGGGEAAAAAEIETETHPETQAKPVPEMKEAETGLSSISGKIRRRTCYE

Query:  CGEKGHLSSNCPKKLLADSIAS
        CGEKGHLSSNCPKKLLADSIAS
Subjt:  CGEKGHLSSNCPKKLLADSIAS

KAG7031626.1 hypothetical protein SDJN02_05667, partial [Cucurbita argyrosperma subsp. argyrosperma]2.6e-61100Show/hide
Query:  MDKETTGEFRGYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAVPKKGTERGGGEAAAAAEIETETHPETQAKPVPEMKEAETGLSSISGKIRRRTCYE
        MDKETTGEFRGYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAVPKKGTERGGGEAAAAAEIETETHPETQAKPVPEMKEAETGLSSISGKIRRRTCYE
Subjt:  MDKETTGEFRGYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAVPKKGTERGGGEAAAAAEIETETHPETQAKPVPEMKEAETGLSSISGKIRRRTCYE

Query:  CGEKGHLSSNCPKKLLADSIAS
        CGEKGHLSSNCPKKLLADSIAS
Subjt:  CGEKGHLSSNCPKKLLADSIAS

XP_022139342.1 protein gar2 [Momordica charantia]1.1e-4375.38Show/hide
Query:  MDKETTGEFRGYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAVPKKGTERGGGEAAAAAEIETETHP--------ETQAKPVPEMKEAETGLSSISGK
        MDKE TGEFRGYAHVDF+DSV LKTALKLDQETIHGRPVK+RCAVPKKGTERG G  AAAAE  ++  P        ET  KP P MKEA++GLSS+SGK
Subjt:  MDKETTGEFRGYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAVPKKGTERGGGEAAAAAEIETETHP--------ETQAKPVPEMKEAETGLSSISGK

Query:  IRRRTCYECGEKGHLSSNCPKKLLADSIAS
        IRRRTCYECGEKGHLSSNCPKK L +S+AS
Subjt:  IRRRTCYECGEKGHLSSNCPKKLLADSIAS

XP_022943192.1 protein gar2 [Cucurbita moschata]2.3e-4168.57Show/hide
Query:  MDKETTGEFRGYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAVPKKGTERGGGEAAAAA------------------EIETETHPETQAKPVPEMKEA
        MDKE TGEFRGYAHVDF+DSV LKTALKLDQETIHGRPVK+RCAVPK+GT RGGG AAAAA                     T    ET  KPVPEM  A
Subjt:  MDKETTGEFRGYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAVPKKGTERGGGEAAAAA------------------EIETETHPETQAKPVPEMKEA

Query:  ETGLSSISGKIRRRTCYECGEKGHLSSNCPKKLLADSIAS
        ++GLS++SGKIRRRTCYECGEKGHLSSNCP K +ADS+AS
Subjt:  ETGLSSISGKIRRRTCYECGEKGHLSSNCPKKLLADSIAS

XP_038891335.1 protein gar2 [Benincasa hispida]4.6e-4276.61Show/hide
Query:  MDKETTGEFRGYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAVPKKGTERGGGEAAAAAEIETETHPETQAKPVPEMKEA--ETGLSSISGKIRRRTC
        MDKE TGEFRGYAHVDF+D+V LKTALKLDQ  IHGRPVK+RCAVPKKGTER GGEAAAAA +  ETH E    P+PE KEA   T +SS+SGKIRRRTC
Subjt:  MDKETTGEFRGYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAVPKKGTERGGGEAAAAAEIETETHPETQAKPVPEMKEA--ETGLSSISGKIRRRTC

Query:  YECGEKGHLSSNCPKKLLADSIAS
        YECGEKGHLSS+CPKK L DS+AS
Subjt:  YECGEKGHLSSNCPKKLLADSIAS

TrEMBL top hitse value%identityAlignment
A0A1S3CF29 RNA-binding protein CP31B, chloroplastic1.5e-4173.6Show/hide
Query:  MDKETTGEFRGYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAVPKKGTERGGGEAAAAAEIETETHPETQAKPVPEMKE---AETGLSSISGKIRRRT
        MDKE TGEFRGYAHVDF+DS+ LKTALKLDQE IHGRPVK+RCAVPKKGTE+GGG AAA A    E HPE   +P+PE KE   AE+ ++S+SGKIRRRT
Subjt:  MDKETTGEFRGYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAVPKKGTERGGGEAAAAAEIETETHPETQAKPVPEMKE---AETGLSSISGKIRRRT

Query:  CYECGEKGHLSSNCPKKLLADSIAS
        CYECGEKGHLSSNCP K  ADS+ S
Subjt:  CYECGEKGHLSSNCPKKLLADSIAS

A0A5A7U7X8 RNA-binding protein CP31B1.5e-4173.6Show/hide
Query:  MDKETTGEFRGYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAVPKKGTERGGGEAAAAAEIETETHPETQAKPVPEMKE---AETGLSSISGKIRRRT
        MDKE TGEFRGYAHVDF+DS+ LKTALKLDQE IHGRPVK+RCAVPKKGTE+GGG AAA A    E HPE   +P+PE KE   AE+ ++S+SGKIRRRT
Subjt:  MDKETTGEFRGYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAVPKKGTERGGGEAAAAAEIETETHPETQAKPVPEMKE---AETGLSSISGKIRRRT

Query:  CYECGEKGHLSSNCPKKLLADSIAS
        CYECGEKGHLSSNCP K  ADS+ S
Subjt:  CYECGEKGHLSSNCPKKLLADSIAS

A0A5D3CX25 RNA-binding protein CP31B1.5e-4173.6Show/hide
Query:  MDKETTGEFRGYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAVPKKGTERGGGEAAAAAEIETETHPETQAKPVPEMKE---AETGLSSISGKIRRRT
        MDKE TGEFRGYAHVDF+DS+ LKTALKLDQE IHGRPVK+RCAVPKKGTE+GGG AAA A    E HPE   +P+PE KE   AE+ ++S+SGKIRRRT
Subjt:  MDKETTGEFRGYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAVPKKGTERGGGEAAAAAEIETETHPETQAKPVPEMKE---AETGLSSISGKIRRRT

Query:  CYECGEKGHLSSNCPKKLLADSIAS
        CYECGEKGHLSSNCP K  ADS+ S
Subjt:  CYECGEKGHLSSNCPKKLLADSIAS

A0A6J1CDP4 protein gar25.3e-4475.38Show/hide
Query:  MDKETTGEFRGYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAVPKKGTERGGGEAAAAAEIETETHP--------ETQAKPVPEMKEAETGLSSISGK
        MDKE TGEFRGYAHVDF+DSV LKTALKLDQETIHGRPVK+RCAVPKKGTERG G  AAAAE  ++  P        ET  KP P MKEA++GLSS+SGK
Subjt:  MDKETTGEFRGYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAVPKKGTERGGGEAAAAAEIETETHP--------ETQAKPVPEMKEAETGLSSISGK

Query:  IRRRTCYECGEKGHLSSNCPKKLLADSIAS
        IRRRTCYECGEKGHLSSNCPKK L +S+AS
Subjt:  IRRRTCYECGEKGHLSSNCPKKLLADSIAS

A0A6J1FSC3 protein gar21.1e-4168.57Show/hide
Query:  MDKETTGEFRGYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAVPKKGTERGGGEAAAAA------------------EIETETHPETQAKPVPEMKEA
        MDKE TGEFRGYAHVDF+DSV LKTALKLDQETIHGRPVK+RCAVPK+GT RGGG AAAAA                     T    ET  KPVPEM  A
Subjt:  MDKETTGEFRGYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAVPKKGTERGGGEAAAAA------------------EIETETHPETQAKPVPEMKEA

Query:  ETGLSSISGKIRRRTCYECGEKGHLSSNCPKKLLADSIAS
        ++GLS++SGKIRRRTCYECGEKGHLSSNCP K +ADS+AS
Subjt:  ETGLSSISGKIRRRTCYECGEKGHLSSNCPKKLLADSIAS

SwissProt top hitse value%identityAlignment
Q9M3B8 Phragmoplastin interacting protein 11.5e-1949.15Show/hide
Query:  TGEFRGYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAV-PKKGTERGGGEAAAAAEIETETHPETQAKPVPEM---KEAETG----LSSISGKIRRRT
        TGEF+GYAHVDF DSV +  ALKLDQ+ I GRPVK+ CA+  +  T+   GE   A     E      A PVP +    E + G     +  S K++RR 
Subjt:  TGEFRGYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAV-PKKGTERGGGEAAAAAEIETETHPETQAKPVPEM---KEAETG----LSSISGKIRRRT

Query:  CYECGEKGHLSSNCPKKL
        CYECGEKGHLS+ CP KL
Subjt:  CYECGEKGHLSSNCPKKL

Arabidopsis top hitse value%identityAlignment
AT3G55340.1 phragmoplastin interacting protein 11.1e-2049.15Show/hide
Query:  TGEFRGYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAV-PKKGTERGGGEAAAAAEIETETHPETQAKPVPEM---KEAETG----LSSISGKIRRRT
        TGEF+GYAHVDF DSV +  ALKLDQ+ I GRPVK+ CA+  +  T+   GE   A     E      A PVP +    E + G     +  S K++RR 
Subjt:  TGEFRGYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAV-PKKGTERGGGEAAAAAEIETETHPETQAKPVPEM---KEAETG----LSSISGKIRRRT

Query:  CYECGEKGHLSSNCPKKL
        CYECGEKGHLS+ CP KL
Subjt:  CYECGEKGHLSSNCPKKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAAGGAGACGACAGGGGAGTTTCGTGGCTATGCCCACGTGGATTTCGCTGACAGCGTCTTGTTAAAAACGGCTCTCAAGTTAGACCAGGAAACAATTCATGGCAG
GCCTGTCAAGGTAAGATGTGCAGTTCCAAAGAAAGGAACAGAAAGAGGAGGAGGAGAAGCAGCAGCAGCAGCAGAAATAGAAACAGAAACACATCCAGAAACGCAAGCAA
AACCTGTGCCTGAAATGAAGGAAGCTGAAACTGGATTAAGCTCTATAAGTGGTAAGATAAGAAGAAGAACATGCTACGAATGTGGTGAAAAAGGCCATCTTTCTTCCAAC
TGCCCAAAGAAGCTGCTTGCGGATTCAATTGCAAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGACAAGGAGACGACAGGGGAGTTTCGTGGCTATGCCCACGTGGATTTCGCTGACAGCGTCTTGTTAAAAACGGCTCTCAAGTTAGACCAGGAAACAATTCATGGCAG
GCCTGTCAAGGTAAGATGTGCAGTTCCAAAGAAAGGAACAGAAAGAGGAGGAGGAGAAGCAGCAGCAGCAGCAGAAATAGAAACAGAAACACATCCAGAAACGCAAGCAA
AACCTGTGCCTGAAATGAAGGAAGCTGAAACTGGATTAAGCTCTATAAGTGGTAAGATAAGAAGAAGAACATGCTACGAATGTGGTGAAAAAGGCCATCTTTCTTCCAAC
TGCCCAAAGAAGCTGCTTGCGGATTCAATTGCAAGTTAG
Protein sequenceShow/hide protein sequence
MDKETTGEFRGYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAVPKKGTERGGGEAAAAAEIETETHPETQAKPVPEMKEAETGLSSISGKIRRRTCYECGEKGHLSSN
CPKKLLADSIAS