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CmoCh04G012780 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G012780
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRNA-binding protein CP31B
Genome locationCmo_Chr04:6478369..6479246
RNA-Seq ExpressionCmoCh04G012780
SyntenyCmoCh04G012780
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR034361 - PHIP1, RNA recognition motif 1
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600066.1 Protein UPSTREAM OF FLC, partial [Cucurbita argyrosperma subsp. sororia]6.1e-2995.71Show/hide
Query:  VATKVYVGGIPYYSTEDDIFSFFESCGTITEVDCMKFPESGKFRGIAILIFKTEAAAKRALAMDGADMGG
        VATKVYVGGIPYYSTEDDI SFFESCGTITEVDCM FPESGKFRGIAIL FKTEAAAKRALAMDGADMGG
Subjt:  VATKVYVGGIPYYSTEDDIFSFFESCGTITEVDCMKFPESGKFRGIAILIFKTEAAAKRALAMDGADMGG

KAG6601013.1 RNA-binding protein 24, partial [Cucurbita argyrosperma subsp. sororia]7.2e-3098.55Show/hide
Query:  MVATKVYVGGIPYYSTEDDIFSFFESCGTITEVDCMKFPESGKFRGIAILIFKTEAAAKRALAMDGADM
        MVATKVYVGGIPYYSTEDDIFS FESCGTITEVDCMKFPESGKFRGIAILIFKTEAAAKRALAMDGADM
Subjt:  MVATKVYVGGIPYYSTEDDIFSFFESCGTITEVDCMKFPESGKFRGIAILIFKTEAAAKRALAMDGADM

KAG7030736.1 hypothetical protein SDJN02_04773, partial [Cucurbita argyrosperma subsp. argyrosperma]6.1e-2995.71Show/hide
Query:  VATKVYVGGIPYYSTEDDIFSFFESCGTITEVDCMKFPESGKFRGIAILIFKTEAAAKRALAMDGADMGG
        VATKVYVGGIPYYSTEDDI SFFESCGTITEVDCM FPESGKFRGIAIL FKTEAAAKRALAMDGADMGG
Subjt:  VATKVYVGGIPYYSTEDDIFSFFESCGTITEVDCMKFPESGKFRGIAILIFKTEAAAKRALAMDGADMGG

XP_022139342.1 protein gar2 [Momordica charantia]1.2e-2997.14Show/hide
Query:  VATKVYVGGIPYYSTEDDIFSFFESCGTITEVDCMKFPESGKFRGIAILIFKTEAAAKRALAMDGADMGG
        VATKVYVGGIPYYSTEDDI SFFESCGTITEVDCMKFPESGKFRGIAIL FKTEAAAKRALAMDGADMGG
Subjt:  VATKVYVGGIPYYSTEDDIFSFFESCGTITEVDCMKFPESGKFRGIAILIFKTEAAAKRALAMDGADMGG

XP_023517053.1 protein gar2 [Cucurbita pepo subsp. pepo]6.1e-2995.71Show/hide
Query:  VATKVYVGGIPYYSTEDDIFSFFESCGTITEVDCMKFPESGKFRGIAILIFKTEAAAKRALAMDGADMGG
        VATKVYVGGIPYYSTEDDI SFFESCGTITEVDCM FPESGKFRGIAIL FKTEAAAKRALAMDGADMGG
Subjt:  VATKVYVGGIPYYSTEDDIFSFFESCGTITEVDCMKFPESGKFRGIAILIFKTEAAAKRALAMDGADMGG

TrEMBL top hitse value%identityAlignment
A0A0A0KLT8 Uncharacterized protein8.6e-2992.86Show/hide
Query:  VATKVYVGGIPYYSTEDDIFSFFESCGTITEVDCMKFPESGKFRGIAILIFKTEAAAKRALAMDGADMGG
        +ATKVYVGGIPYYSTEDDI SFFESCGTITE+DCMKFPESGKFRGIAIL FKTEAAAKRALA DGADMGG
Subjt:  VATKVYVGGIPYYSTEDDIFSFFESCGTITEVDCMKFPESGKFRGIAILIFKTEAAAKRALAMDGADMGG

A0A5A7U7X8 RNA-binding protein CP31B8.6e-2992.86Show/hide
Query:  VATKVYVGGIPYYSTEDDIFSFFESCGTITEVDCMKFPESGKFRGIAILIFKTEAAAKRALAMDGADMGG
        +ATKVYVGGIPYYSTEDDI SFFESCGTITE+DCMKFPESGKFRGIAIL FKTEAAAKRALA DGADMGG
Subjt:  VATKVYVGGIPYYSTEDDIFSFFESCGTITEVDCMKFPESGKFRGIAILIFKTEAAAKRALAMDGADMGG

A0A6J1CDP4 protein gar25.9e-3097.14Show/hide
Query:  VATKVYVGGIPYYSTEDDIFSFFESCGTITEVDCMKFPESGKFRGIAILIFKTEAAAKRALAMDGADMGG
        VATKVYVGGIPYYSTEDDI SFFESCGTITEVDCMKFPESGKFRGIAIL FKTEAAAKRALAMDGADMGG
Subjt:  VATKVYVGGIPYYSTEDDIFSFFESCGTITEVDCMKFPESGKFRGIAILIFKTEAAAKRALAMDGADMGG

A0A6J1FSC3 protein gar22.9e-2995.71Show/hide
Query:  VATKVYVGGIPYYSTEDDIFSFFESCGTITEVDCMKFPESGKFRGIAILIFKTEAAAKRALAMDGADMGG
        VATKVYVGGIPYYSTEDDI SFFESCGTITEVDCM FPESGKFRGIAIL FKTEAAAKRALAMDGADMGG
Subjt:  VATKVYVGGIPYYSTEDDIFSFFESCGTITEVDCMKFPESGKFRGIAILIFKTEAAAKRALAMDGADMGG

A0A6J1JA04 protein gar2-like2.9e-2995.71Show/hide
Query:  VATKVYVGGIPYYSTEDDIFSFFESCGTITEVDCMKFPESGKFRGIAILIFKTEAAAKRALAMDGADMGG
        VATKVYVGGIPYYSTEDDI SFFESCGTITEVDCM FPESGKFRGIAIL FKTEAAAKRALAMDGADMGG
Subjt:  VATKVYVGGIPYYSTEDDIFSFFESCGTITEVDCMKFPESGKFRGIAILIFKTEAAAKRALAMDGADMGG

SwissProt top hitse value%identityAlignment
Q5ZMA3 RNA-binding protein 242.9e-0537.93Show/hide
Query:  TKVYVGGIPYYSTEDDIFSFFESCGTITEVDCMKFPESGKFRGIAILIFKTEAAAKRA
        TK++VGG+PY++T+  +  +FE  G I E   +   ++GK RG   +     AAA+RA
Subjt:  TKVYVGGIPYYSTEDDIFSFFESCGTITEVDCMKFPESGKFRGIAILIFKTEAAAKRA

Q6GQD3 RNA-binding protein 24-A2.9e-0537.93Show/hide
Query:  TKVYVGGIPYYSTEDDIFSFFESCGTITEVDCMKFPESGKFRGIAILIFKTEAAAKRA
        TK++VGG+PY++T+  +  +FE  G I E   +   ++GK RG   +     AAA+RA
Subjt:  TKVYVGGIPYYSTEDDIFSFFESCGTITEVDCMKFPESGKFRGIAILIFKTEAAAKRA

Q6P8A7 RNA-binding protein 242.9e-0537.93Show/hide
Query:  TKVYVGGIPYYSTEDDIFSFFESCGTITEVDCMKFPESGKFRGIAILIFKTEAAAKRA
        TK++VGG+PY++T+  +  +FE  G I E   +   ++GK RG   +     AAA+RA
Subjt:  TKVYVGGIPYYSTEDDIFSFFESCGTITEVDCMKFPESGKFRGIAILIFKTEAAAKRA

Q9I8B3 RNA-binding protein 24-B2.9e-0537.93Show/hide
Query:  TKVYVGGIPYYSTEDDIFSFFESCGTITEVDCMKFPESGKFRGIAILIFKTEAAAKRA
        TK++VGG+PY++T+  +  +FE  G I E   +   ++GK RG   +     AAA+RA
Subjt:  TKVYVGGIPYYSTEDDIFSFFESCGTITEVDCMKFPESGKFRGIAILIFKTEAAAKRA

Q9M3B8 Phragmoplastin interacting protein 13.3e-1761.43Show/hide
Query:  MVATKVYVGGIPYYSTEDDIFSFFESCGTITEVDCMKFPESGKFRGIAILIFKTEAAAKRALAMDGADMG
        +V  K+YVGGIPY STED+I S+F SCG I +VDC   PE G F GIA + F TE  AKRALA D A MG
Subjt:  MVATKVYVGGIPYYSTEDDIFSFFESCGTITEVDCMKFPESGKFRGIAILIFKTEAAAKRALAMDGADMG

Arabidopsis top hitse value%identityAlignment
AT1G74230.1 glycine-rich RNA-binding protein 51.0e-0530.99Show/hide
Query:  MVATKVYVGGIPYYSTEDDIFSFFESCGTITEVDCMKFPESGKFRGIAILIFKTEAAAKRALAMDGADMGG
        M ++K++VGGI Y + E  +   F   G + +   +   E+G+ RG A + F +   A  A+ +DG D+ G
Subjt:  MVATKVYVGGIPYYSTEDDIFSFFESCGTITEVDCMKFPESGKFRGIAILIFKTEAAAKRALAMDGADMGG

AT3G52660.1 RNA-binding (RRM/RBD/RNP motifs) family protein5.9e-0636.23Show/hide
Query:  TKVYVGGIPYYSTEDDIFSFFESCGTITEVDCMKFPESGKFRGIAILIFKTEAAAKRAL-AMDGADMGG
        ++VY+GGIP  +TE D+  F  S G +TEV  M+  +SG  +G A + F+++  A  A+  ++  D  G
Subjt:  TKVYVGGIPYYSTEDDIFSFFESCGTITEVDCMKFPESGKFRGIAILIFKTEAAAKRAL-AMDGADMGG

AT3G52660.2 RNA-binding (RRM/RBD/RNP motifs) family protein5.9e-0636.23Show/hide
Query:  TKVYVGGIPYYSTEDDIFSFFESCGTITEVDCMKFPESGKFRGIAILIFKTEAAAKRAL-AMDGADMGG
        ++VY+GGIP  +TE D+  F  S G +TEV  M+  +SG  +G A + F+++  A  A+  ++  D  G
Subjt:  TKVYVGGIPYYSTEDDIFSFFESCGTITEVDCMKFPESGKFRGIAILIFKTEAAAKRAL-AMDGADMGG

AT3G55340.1 phragmoplastin interacting protein 12.3e-1861.43Show/hide
Query:  MVATKVYVGGIPYYSTEDDIFSFFESCGTITEVDCMKFPESGKFRGIAILIFKTEAAAKRALAMDGADMG
        +V  K+YVGGIPY STED+I S+F SCG I +VDC   PE G F GIA + F TE  AKRALA D A MG
Subjt:  MVATKVYVGGIPYYSTEDDIFSFFESCGTITEVDCMKFPESGKFRGIAILIFKTEAAAKRALAMDGADMG

AT4G00830.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.2e-0537.29Show/hide
Query:  TKVYVGGIPYYSTEDDIFSFFESCGTITEVDCMKFPESGKFRGIAILIFKTEAAAKRAL
        ++V++GG+P    E+D+    E  G I EV  MK  +SG  +G A + FKT+  A++A+
Subjt:  TKVYVGGIPYYSTEDDIFSFFESCGTITEVDCMKFPESGKFRGIAILIFKTEAAAKRAL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGCTACAAAAGTGTATGTTGGAGGCATTCCATATTATTCAACTGAGGACGATATTTTTAGCTTTTTTGAAAGCTGTGGCACTATAACCGAAGTTGATTGTATGAA
GTTTCCAGAGAGTGGCAAATTCAGAGGCATTGCAATATTAATTTTCAAGACCGAAGCTGCAGCAAAACGAGCACTAGCCATGGATGGAGCTGACATGGGGGGGCCTCTTC
CTTAA
mRNA sequenceShow/hide mRNA sequence
CCAATCCCAATAATCCTCAACACTTGCAATATTCCCGAGTGAAGTAAGTGAAAATGGTGGCTACAAAAGTGTATGTTGGAGGCATTCCATATTATTCAACTGAGGACGAT
ATTTTTAGCTTTTTTGAAAGCTGTGGCACTATAACCGAAGTTGATTGTATGAAGTTTCCAGAGAGTGGCAAATTCAGAGGCATTGCAATATTAATTTTCAAGACCGAAGC
TGCAGCAAAACGAGCACTAGCCATGGATGGAGCTGACATGGGGGGGCCTCTTCCTTAA
Protein sequenceShow/hide protein sequence
MVATKVYVGGIPYYSTEDDIFSFFESCGTITEVDCMKFPESGKFRGIAILIFKTEAAAKRALAMDGADMGGPLP