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CmoCh04G012970 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G012970
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionSerine/arginine-rich splicing factor RS2Z32
Genome locationCmo_Chr04:6591296..6593106
RNA-Seq ExpressionCmoCh04G012970
SyntenyCmoCh04G012970
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0055085 - transmembrane transport (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0016607 - nuclear speck (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0140359 - ABC-type transmembrane transporter activity (molecular function)
InterPro domainsIPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AGE46047.1 arginine/serine-rich splicing factor RS2Z39 transcript V [Zea mays]1.5e-1575Show/hide
Query:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRFFGLCQTWRSMVRGFPWWIW
        MPRYDDRYGGTRLYVGRL++RTRSRDL+ LF RYGRFFG  +  RS+V G PWW W
Subjt:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRFFGLCQTWRSMVRGFPWWIW
CBI32650.3 unnamed protein product, partial [Vitis vinifera]9.5e-1881.48Show/hide
Query:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRFFGLCQTWRSMVRGFPWW
        MPRYDDRYG TRLYVGRLSSRTR+RDL+ LFSRYGRF G C TWRSMV G+ WW
Subjt:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRFFGLCQTWRSMVRGFPWW
KAF3972588.1 hypothetical protein CMV_003911 [Castanea mollissima]1.5e-1589.13Show/hide
Query:  KMPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRFFGLCQTWR
        KMPRYDDRYGG+RLYVGRLSSRTRSRDLDD+FSRYGRF G C TWR
Subjt:  KMPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRFFGLCQTWR
KAF4372419.1 hypothetical protein F8388_027092 [Cannabis sativa]3.4e-2386.67Show/hide
Query:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRFFGLCQTWRSMVRGFPWWIWRVFL
        MPRYDDRYGGTRLYVGRL SR R RDL+DLFSRYGRFFG CQTWRS+VRG  WWIWRVFL
Subjt:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRFFGLCQTWRSMVRGFPWWIWRVFL
KAG6669979.1 hypothetical protein CIPAW_01G279300 [Carya illinoinensis]1.1e-1894Show/hide
Query:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRFFGLCQTWRSMVRG
        MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRF G C TWRSMVRG
Subjt:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRFFGLCQTWRSMVRG
TrEMBL top hitse value%identityAlignment
A0A061ERP0 RNA-binding family protein with retrovirus zinc finger-like domain, putative2.4e-1478Show/hide
Query:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRFFGLCQTWRSMVRG
        MPR+D RYG TRLYVGRLSSRTR+RDL+ +FSRYGRF G C TWR MVRG
Subjt:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRFFGLCQTWRSMVRG
A0A7G2EX24 (thale cress) hypothetical protein8.2e-1576.47Show/hide
Query:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRFFGLCQTWRSMVRGF
        MPRYDDRYG TRLYVGRLSSRTR+RDL+ LFSRYGRF G+C TWR ++ G+
Subjt:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRFFGLCQTWRSMVRGF
A0A7J6GY79 Uncharacterized protein1.6e-2386.67Show/hide
Query:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRFFGLCQTWRSMVRGFPWWIWRVFL
        MPRYDDRYGGTRLYVGRL SR R RDL+DLFSRYGRFFG CQTWRS+VRG  WWIWRVFL
Subjt:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRFFGLCQTWRSMVRGFPWWIWRVFL
D7TQD0 Uncharacterized protein4.6e-1881.48Show/hide
Query:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRFFGLCQTWRSMVRGFPWW
        MPRYDDRYG TRLYVGRLSSRTR+RDL+ LFSRYGRF G C TWRSMV G+ WW
Subjt:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRFFGLCQTWRSMVRGFPWW
M1HA94 Arginine/serine-rich splicing factor RS2Z39 transcript V7.4e-1675Show/hide
Query:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRFFGLCQTWRSMVRGFPWWIW
        MPRYDDRYGGTRLYVGRL++RTRSRDL+ LF RYGRFFG  +  RS+V G PWW W
Subjt:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRFFGLCQTWRSMVRGFPWWIW
SwissProt top hitse value%identityAlignment
Q8VYA5 Serine/arginine-rich splicing factor RS2Z331.8e-1188.89Show/hide
Query:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGR
        MPRYDDRYG TRLYVGRLSSRTR+RDL+ LFSRYGR
Subjt:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGR
Q9FYB7 Serine/arginine-rich splicing factor RS2Z321.8e-1188.89Show/hide
Query:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGR
        MPRYDDRYG TRLYVGRLSSRTR+RDL+ LFSRYGR
Subjt:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGR
Arabidopsis top hitse value%identityAlignment
AT2G37340.1 arginine/serine-rich zinc knuckle-containing protein 331.3e-1288.89Show/hide
Query:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGR
        MPRYDDRYG TRLYVGRLSSRTR+RDL+ LFSRYGR
Subjt:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGR
AT3G53500.2 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain1.3e-1288.89Show/hide
Query:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGR
        MPRYDDRYG TRLYVGRLSSRTR+RDL+ LFSRYGR
Subjt:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAATCGAACACTAAACGCACTAACTTTCTCACACCGGAATCAGCCGATCGGAAGTCGATTGAAGAAACCCGGGAACAAAAATTCGAGGAGATCAGAACGAAAAAA
AAAAAGAAAAAAACTAAAACAGCACAATAACAAAACAAACTATTTCCTAATTGCAAAACGATTAGAAAGTGCGCCTCCTTCGAATTCTCTAGATAAAATGCCAAGGTACG
ACGATCGTTACGGTGGTACTCGGCTCTACGTTGGGCGCCTGTCTTCACGGACGAGGTCCCGTGATCTGGATGACTTGTTCAGTCGTTATGGAAGGTTTTTTGGCTTATGC
CAAACCTGGAGGTCTATGGTGAGAGGGTTCCCTTGGTGGATTTGGCGAGTCTTTCTATTATGTTATTGCCTGTTTTTATGGAAATGCCAAGAATCTCAGAGTGGTGTTTA
G
mRNA sequenceShow/hide mRNA sequence
ATGAACAATCGAACACTAAACGCACTAACTTTCTCACACCGGAATCAGCCGATCGGAAGTCGATTGAAGAAACCCGGGAACAAAAATTCGAGGAGATCAGAACGAAAAAA
AAAAAGAAAAAAACTAAAACAGCACAATAACAAAACAAACTATTTCCTAATTGCAAAACGATTAGAAAGTGCGCCTCCTTCGAATTCTCTAGATAAAATGCCAAGGTACG
ACGATCGTTACGGTGGTACTCGGCTCTACGTTGGGCGCCTGTCTTCACGGACGAGGTCCCGTGATCTGGATGACTTGTTCAGTCGTTATGGAAGGTTTTTTGGCTTATGC
CAAACCTGGAGGTCTATGGTGAGAGGGTTCCCTTGGTGGATTTGGCGAGTCTTTCTATTATGTTATTGCCTGTTTTTATGGAAATGCCAAGAATCTCAGAGTGGTGTTTA
G
Protein sequenceShow/hide protein sequence
MNNRTLNALTFSHRNQPIGSRLKKPGNKNSRRSERKKKRKKLKQHNNKTNYFLIAKRLESAPPSNSLDKMPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRFFGLC
QTWRSMVRGFPWWIWRVFLLCYCLFLWKCQESQSGV