CuGenDBv2

Gene ID	CmoCh04G013490
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	ferredoxin-thioredoxin reductase, variable chain
Genome location	Cmo_Chr04:6882910..6883443
RNA-Seq Expression	CmoCh04G013490
Synteny	CmoCh04G013490
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0016310 - phosphorylation (biological process) GO:0030148 - sphingolipid biosynthetic process (biological process) GO:0003951 - NAD+ kinase activity (molecular function) GO:0017050 - D-erythro-sphingosine kinase activity (molecular function)
InterPro domains	IPR004207 - Ferredoxin thioredoxin reductase, alpha chain IPR008990 - Electron transport accessory-like domain superfamily IPR044166 - Ferredoxin-thioredoxin reductase, variable chain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6601079.1 hypothetical protein SDJN03_06312, partial [Cucurbita argyrosperma subsp. sororia]

2.0e-86

98.31

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Query:  MITMANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAATTSLSEDETDEAAAAR
        MITMANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNCS+TRGRRFFSEVTVKSDSGTLSSAAAVSAATTSLSEDETDEAAAAR
Subjt:  MITMANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAATTSLSEDETDEAAAAR

Query:  IGARVRVKVPLKVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        IGARVRVKVPLK+YHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKF+AHLKEEEFEYV
Subjt:  IGARVRVKVPLKVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

KAG7031885.1 hypothetical protein SDJN02_05926, partial [Cucurbita argyrosperma subsp. argyrosperma]

9.0e-87

98.87

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Query:  MITMANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAATTSLSEDETDEAAAAR
        MITMANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNCS+TRGRRFFSEVTVKSDSGTLSSAAAVSAATTSLSEDETDEAAAAR
Subjt:  MITMANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAATTSLSEDETDEAAAAR

Query:  IGARVRVKVPLKVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        IGARVRVKVPLKVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKF+AHLKEEEFEYV
Subjt:  IGARVRVKVPLKVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

XP_022957590.1 ferredoxin-thioredoxin reductase, variable chain, chloroplastic-like [Cucurbita moschata]

3.1e-87

100

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Query:  MITMANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAATTSLSEDETDEAAAAR
        MITMANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAATTSLSEDETDEAAAAR
Subjt:  MITMANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAATTSLSEDETDEAAAAR

Query:  IGARVRVKVPLKVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        IGARVRVKVPLKVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
Subjt:  IGARVRVKVPLKVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

XP_022999561.1 ferredoxin-thioredoxin reductase, variable chain, chloroplastic-like [Cucurbita maxima]

4.9e-85

98.31

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Query:  MITMANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAATTSLSEDETDEAAAAR
        MITMANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYS SVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAA TSLSEDETDEAAAAR
Subjt:  MITMANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAATTSLSEDETDEAAAAR

Query:  IGARVRVKVPLKVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        IGARVRVKVPL VYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
Subjt:  IGARVRVKVPLKVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

XP_023549490.1 ferredoxin-thioredoxin reductase, variable chain, chloroplastic-like [Cucurbita pepo subsp. pepo]

1.5e-86

99.44

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Query:  MITMANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAATTSLSEDETDEAAAAR
        MITMANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNCSI RGRRFFSEVTVKSDSGTLSSAAAVSAATTSLSEDETDEAAAAR
Subjt:  MITMANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAATTSLSEDETDEAAAAR

Query:  IGARVRVKVPLKVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        IGARVRVKVPLKVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
Subjt:  IGARVRVKVPLKVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KV36 FeThRed_A domain-containing protein

2.7e-73

85.64

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Query:  MITMANSIGVIPTPAPT----AARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAATTSLSEDETDEA
        MI++ANSIGVIP+PAP+    AAR ACSMTVFS+ D KSS+S SV SLSS+VVNPFNCSI RGRR FSEV V+SDSGT SSA AVSAATTSLSE+ETDEA
Subjt:  MITMANSIGVIPTPAPT----AARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAATTSLSEDETDEA

Query:  AAARIGARVRVKVPLKVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        AAARIGARVRVKVPLKVYHVAKLP+A+LEGMEGV+KDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
Subjt:  AAARIGARVRVKVPLKVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

A0A1S3BEI2 ferredoxin-thioredoxin reductase, variable chain

1.8e-72

84.53

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Query:  MITMANSIGVIPTPAPT----AARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAATTSLSEDETDEA
        MI +ANSIG++P P P+    AAR ACSMTVFS++D +SS+S SV SLSSVVVNPFNCSI RGRR FSEV+V+SDSGT SSA AVSAATTSLSE+ETDEA
Subjt:  MITMANSIGVIPTPAPT----AARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAATTSLSEDETDEA

Query:  AAARIGARVRVKVPLKVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        AAARIGARVRVKVPLKVYHVAKLPEA+LEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPP+KFVAHLKEEEFEYV
Subjt:  AAARIGARVRVKVPLKVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

A0A5D3D039 Sphingoid long-chain bases kinase 1

1.8e-72

84.53

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Query:  MITMANSIGVIPTPAPT----AARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAATTSLSEDETDEA
        MI +ANSIG++P P P+    AAR ACSMTVFS++D +SS+S SV SLSSVVVNPFNCSI RGRR FSEV+V+SDSGT SSA AVSAATTSLSE+ETDEA
Subjt:  MITMANSIGVIPTPAPT----AARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAATTSLSEDETDEA

Query:  AAARIGARVRVKVPLKVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        AAARIGARVRVKVPLKVYHVAKLPEA+LEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPP+KFVAHLKEEEFEYV
Subjt:  AAARIGARVRVKVPLKVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

A0A6J1H0Z6 ferredoxin-thioredoxin reductase, variable chain, chloroplastic-like

1.5e-87

100

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Query:  MITMANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAATTSLSEDETDEAAAAR
        MITMANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAATTSLSEDETDEAAAAR
Subjt:  MITMANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAATTSLSEDETDEAAAAR

Query:  IGARVRVKVPLKVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        IGARVRVKVPLKVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
Subjt:  IGARVRVKVPLKVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

A0A6J1KDF2 ferredoxin-thioredoxin reductase, variable chain, chloroplastic-like

2.4e-85

98.31

Show/hide

Query:  MITMANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAATTSLSEDETDEAAAAR
        MITMANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYS SVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAA TSLSEDETDEAAAAR
Subjt:  MITMANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAATTSLSEDETDEAAAAR

Query:  IGARVRVKVPLKVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        IGARVRVKVPL VYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
Subjt:  IGARVRVKVPLKVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

SwissProt top hits

e value

%identity

Alignment

P38365 Ferredoxin-thioredoxin reductase, variable chain, chloroplastic

1.9e-18

39.88

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Query:  TAARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNC-SITRGR-----RFFSEVTVKSDSGTLSSAAAVSAATTSLSEDETDEAAAARIGARVRVKVP
        ++A  A + T  ++   +     S ++ S+ V +   C +ITR R         EV +KSDS T       S++++   EDE  +    ++G +V+VK P
Subjt:  TAARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNC-SITRGR-----RFFSEVTVKSDSGTLSSAAAVSAATTSLSEDETDEAAAARIGARVRVKVP

Query:  LKVYHVAKLPEADL-EGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        LKVYHV KLPE +L   M GV+K YV  WKGK +S N P+KVE+ + V  R  VK V HLKEEEFE +
Subjt:  LKVYHVAKLPEADL-EGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

P80680 Ferredoxin-thioredoxin reductase, variable chain

6.0e-25

64.71

Show/hide

Query:  DEAAAARIGARVRVKVPLKVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRP-PVKFVAHLKEEEFEYV
        + AAA +IG RVRV  PL+VYHV K P+ D++GMEGV+K YV VWKGKRV+AN P+KVEF + VEG+P PV+F AHL+E+EFE+V
Subjt:  DEAAAARIGARVRVKVPLKVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRP-PVKFVAHLKEEEFEYV

Q55781 Ferredoxin-thioredoxin reductase, variable chain

7.6e-04

37.33

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Query:  IGARVRVKVPLKVYH--VAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEE
        +G RVRV   + VYH    K    DL+GMEG +   +  W+G+ +SANLP  V+F          +F AH + +E
Subjt:  IGARVRVKVPLKVYH--VAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEE

Arabidopsis top hits

e value

%identity

Alignment

AT5G08410.1 ferredoxin/thioredoxin reductase subunit A (variable subunit) 2

5.3e-29

44.86

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Query:  MANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNCSITRGR--------RFFSEVTVKSDSGTLSSAAAVSAATTSLS---EDE
        M NS  + P     A RP  S     +     S   S++S SS +  P + S + GR        R   + T++ D    S+A+  + A  S S   E E
Subjt:  MANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNCSITRGR--------RFFSEVTVKSDSGTLSSAAAVSAATTSLS---EDE

Query:  TDEAAAARIGARVRVKVPLKVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
         DE A  +IGARVRV VPLKVYHV ++PE +L GMEG +KDYV +WKGK++SANLP+KV+FV  +EGR PVKF  HLKE+EFE +
Subjt:  TDEAAAARIGARVRVKVPLKVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

AT5G23440.1 ferredoxin/thioredoxin reductase subunit A (variable subunit) 1

1.4e-29

44.02

Show/hide

Query:  MANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNCSITRGR------RFFSEVTVKSDSGTLSSAAAVSA----ATTSLSEDET
        M++ I + P  A    RP+ S    S++   ++ +P   +L S +V P +   ++ +      R  S  T++ D   + SA +++A    +++  SE+E 
Subjt:  MANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNCSITRGR------RFFSEVTVKSDSGTLSSAAAVSA----ATTSLSEDET

Query:  DEAAAARIGARVRVKVPLKVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        +  A A+IG+RVRV  PLKVYHV ++PE DLEGMEG LKDYV VWKGKR+SANLPYK+EF   +EGR  VKFV+HLKE+EFE++
Subjt:  DEAAAARIGARVRVKVPLKVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

Sequences

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CDS sequence

Show/hide CDS sequence

ATGATCACTATGGCGAACAGTATCGGCGTGATACCAACGCCGGCGCCCACGGCCGCTCGTCCTGCCTGTTCTATGACGGTATTCTCTAGTACTGATTTCAAATCGTCCTA
TTCCCCGTCCGTGAGTTCTCTATCGTCAGTTGTTGTTAATCCTTTCAACTGCTCGATTACAAGAGGGAGAAGATTCTTCAGCGAAGTTACTGTCAAATCAGATTCCGGTA
CTTTGTCTTCAGCTGCTGCTGTTTCGGCGGCGACGACGTCATTGTCGGAGGATGAGACGGATGAAGCGGCTGCCGCTAGAATTGGAGCCAGAGTTAGGGTTAAGGTGCCT
TTGAAGGTGTATCATGTTGCTAAGTTACCGGAGGCGGATCTTGAGGGGATGGAAGGAGTGCTGAAGGATTATGTACGTGTTTGGAAGGGGAAGCGTGTATCTGCTAATCT
TCCGTATAAGGTGGAGTTTGTTGTTCCAGTCGAAGGCCGTCCACCGGTCAAATTCGTAGCTCATCTTAAGGAGGAAGAATTTGAATACGTTTAA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MITMANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAATTSLSEDETDEAAAARIGARVRVKVP
LKVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

CmoCh04G013490 (gene) of Cucurbita moschata (Rifu) v1 genome