; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh04G013590 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G013590
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationCmo_Chr04:6928043..6929529
RNA-Seq ExpressionCmoCh04G013590
SyntenyCmoCh04G013590
Gene Ontology termsGO:0005515 - protein binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily
IPR032867 - DYW domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CBI40653.3 unnamed protein product, partial [Vitis vinifera]6.8e-3634.72Show/hide
Query:  MTGVVNLCAKCRQIDDAYKVFDRMPQRDLVFWGAIMA---------------------GPRPDLITFVTVLPAVADVRSF----VRHGYAIRAGFAKLVN
        MTGVVN+ AKCR +++AYK+FDRMP+RDLV W  I++                     G RPD IT V++LPAVADV S       HGY++RAGF   VN
Subjt:  MTGVVNLCAKCRQIDDAYKVFDRMPQRDLVFWGAIMA---------------------GPRPDLITFVTVLPAVADVRSF----VRHGYAIRAGFAKLVN

Query:  ISTALRTVVSWNSMI----VGYVQSGEPEMAIAGGRDRDKLSNVILVEALNAYADLGDRKR---------------------------------------
        +STAL  + S    +    + + +    E+      ++ +++NV ++ AL+A ADLGD ++                                       
Subjt:  ISTALRTVVSWNSMI----VGYVQSGEPEMAIAGGRDRDKLSNVILVEALNAYADLGDRKR---------------------------------------

Query:  ---------------------------------------------------------------STTHLQSKSIYAFFEELRDEIKVADYVPDTNSIQDVE
                                                                       +T+H Q+K IYAF E L + IK A Y+PDTNS+ DVE
Subjt:  ---------------------------------------------------------------STTHLQSKSIYAFFEELRDEIKVADYVPDTNSIQDVE

Query:  DDVQEQLLNSHSEKLAITFGLLNTSPDTTIHVRKNLR
        D V+EQLLNSHSEKLAI F LLNTSP TTIH+RKNLR
Subjt:  DDVQEQLLNSHSEKLAITFGLLNTSPDTTIHVRKNLR

GAU16441.1 hypothetical protein TSUD_117900 [Trifolium subterraneum]4.1e-4144.67Show/hide
Query:  MTGVVNLCAKCRQIDDAYKVFDRMPQRDLVFWGAIMAG---------------------PRPDLITFVTVLPAVADVRSF----VRHGYAIRAGF---AK
        M GV+N   KC +IDDAYK+F+RM ++DLV W +++AG                      +PD +  V+VLPAVAD++ F      HGYA+R GF    K
Subjt:  MTGVVNLCAKCRQIDDAYKVFDRMPQRDLVFWGAIMAG---------------------PRPDLITFVTVLPAVADVRSF----VRHGYAIRAGF---AK

Query:  LVNISTAL------RTVVSWNSMIVGYVQSGEPEMAIA---GGRDRDKLSNVI-LVEALNAYADLGDRKRSTTHLQSKSIYAFFEELRDEIKVADYVPDT
         V+++ ++      +T V+WN+MI+GY Q+G    A++     + +D  S+   LV  + A A+L    ++        IYAF E L D+I+ A YVPDT
Subjt:  LVNISTAL------RTVVSWNSMIVGYVQSGEPEMAIA---GGRDRDKLSNVI-LVEALNAYADLGDRKRSTTHLQSKSIYAFFEELRDEIKVADYVPDT

Query:  NSIQDVEDDVQEQLLNSHSEKLAITFGLLNTSPDTTIHVRKNLR
        +SI DVE+DV+EQLL+SHSE+LAI FGLLNTSP TTIHVRKNLR
Subjt:  NSIQDVEDDVQEQLLNSHSEKLAITFGLLNTSPDTTIHVRKNLR

KAG7031895.1 Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-8472.69Show/hide
Query:  MTGVVNLCAKCRQIDDAYKVFDRMPQRDLVFWGAIMAG------------PRPDLITFVTVLPAVADVRSFVRHGYAIRAGFAKLVNISTALRTVVSWNS
        MTGVVNLC KCRQIDDAYKVFDRMPQRDL+FWGAIMAG            PRPDLITFVTVLPAVADVRSFVRHGYAIRAGFAK       LRTVVSWNS
Subjt:  MTGVVNLCAKCRQIDDAYKVFDRMPQRDLVFWGAIMAG------------PRPDLITFVTVLPAVADVRSFVRHGYAIRAGFAKLVNISTALRTVVSWNS

Query:  MIVGYVQSGEPEMAIAGGRDRDKLSNVILVEALNAYADLGDRKRS--------------------TTHLQSKSIYAF-----------FEELRDEIKVAD
        MIVGYVQSGEPEMAIAGGRDRDKLSNVILVEAL+AYADLGDRKR                      + +  K I AF             ++RDEIKVAD
Subjt:  MIVGYVQSGEPEMAIAGGRDRDKLSNVILVEALNAYADLGDRKRS--------------------TTHLQSKSIYAF-----------FEELRDEIKVAD

Query:  YVPDTNSIQDVEDDVQEQLLNSHSEKLAITFGLLNTSPDTTIHVRKNLR
        YVPDTNSIQDVEDDVQEQLLNSHSEKLAITFGLLNTSPDTTI  RKNLR
Subjt:  YVPDTNSIQDVEDDVQEQLLNSHSEKLAITFGLLNTSPDTTIHVRKNLR

XP_008445930.1 PREDICTED: pentatricopeptide repeat-containing protein At1g11290, chloroplastic [Cucumis melo]5.4e-3348.77Show/hide
Query:  MTGVVNLCAKCRQIDDAYKVFDRMPQRDLVFWGAIMA---------------------GPRPDLITFVTVLPAVADVRSFV----RHGYAIRAGFAKLVN
        MTGVVN+ AKCRQIDDAYK+FDRMP+RDLV W  I+A                     G RPD IT VTVLPA ADV S +     HGYAIRAGFAKLVN
Subjt:  MTGVVNLCAKCRQIDDAYKVFDRMPQRDLVFWGAIMA---------------------GPRPDLITFVTVLPAVADVRSFV----RHGYAIRAGFAKLVN

Query:  ISTAL----------------------RTVVSWNSMIVGYVQSGEPEMAIA-------GGRDRDKLSNVILVEALNAYADLGDRKRSTTHLQSKSIYAFF
        ISTAL                      +TVVSWNSM+ GYVQ+GEPE AIA        G D    ++V ++EAL+A ADLGD +R       K ++ F 
Subjt:  ISTAL----------------------RTVVSWNSMIVGYVQSGEPEMAIA-------GGRDRDKLSNVILVEALNAYADLGDRKRSTTHLQSKSIYAFF

Query:  EEL
        ++L
Subjt:  EEL

XP_008445930.1 PREDICTED: pentatricopeptide repeat-containing protein At1g11290, chloroplastic [Cucumis melo]4.6e-2486.49Show/hide
Query:  STTHLQSKSIYAFFEELRDEIKVADYVPDTNSIQDVEDDVQEQLLNSHSEKLAITFGLLNTSPDTTIHVRKNLR
        STTH QSK IYAF EEL  EIK A YVPDTNSI DVEDDVQEQLLNSHSEKLAI FGLLNTSP TTIHVRKNLR
Subjt:  STTHLQSKSIYAFFEELRDEIKVADYVPDTNSIQDVEDDVQEQLLNSHSEKLAITFGLLNTSPDTTIHVRKNLR

XP_008445930.1 PREDICTED: pentatricopeptide repeat-containing protein At1g11290, chloroplastic [Cucumis melo]9.1e-3351.67Show/hide
Query:  MTGVVNLCAKCRQIDDAYKVFDRMPQRDLVFWGAIMA---------------------GPRPDLITFVTVLPAVADVRSFV----RHGYAIRAGFAKLVN
        MTGVVN+ AKCRQIDDAYK+FDRMP RDLV W  I+                      G RPD IT VTVLPA AD+ S +     HGYAIRAGF+KLVN
Subjt:  MTGVVNLCAKCRQIDDAYKVFDRMPQRDLVFWGAIMA---------------------GPRPDLITFVTVLPAVADVRSFV----RHGYAIRAGFAKLVN

Query:  ISTAL----------------------RTVVSWNSMIVGYVQSGEPEMAIAGGR----DRDKLSNVILVEALNAYADLGD
        ISTAL                      +TVVSWNSM+ GYVQSGEPEMAIA       +  + +NV ++EAL+A ADLGD
Subjt:  ISTAL----------------------RTVVSWNSMIVGYVQSGEPEMAIAGGR----DRDKLSNVILVEALNAYADLGD

XP_023541274.1 pentatricopeptide repeat-containing protein At1g11290, chloroplastic [Cucurbita pepo subsp. pepo]2.7e-2485.14Show/hide
Query:  STTHLQSKSIYAFFEELRDEIKVADYVPDTNSIQDVEDDVQEQLLNSHSEKLAITFGLLNTSPDTTIHVRKNLR
        STTH QSK IYAF EEL DEIK A YVPDT+SI DVEDDVQEQLLNSHSEKLAI F LLNTSP+TTIHVRKNLR
Subjt:  STTHLQSKSIYAFFEELRDEIKVADYVPDTNSIQDVEDDVQEQLLNSHSEKLAITFGLLNTSPDTTIHVRKNLR

TrEMBL top hitse value%identityAlignment
A0A0A0KPP6 DYW_deaminase domain-containing protein1.4e-2385.14Show/hide
Query:  STTHLQSKSIYAFFEELRDEIKVADYVPDTNSIQDVEDDVQEQLLNSHSEKLAITFGLLNTSPDTTIHVRKNLR
        STTH QSK IYAF EEL  EIK A YVPDTN I DVEDDVQEQLLNSHSEKLAI FGLLNTSP TTIHVRKNLR
Subjt:  STTHLQSKSIYAFFEELRDEIKVADYVPDTNSIQDVEDDVQEQLLNSHSEKLAITFGLLNTSPDTTIHVRKNLR

A0A1S3BEJ2 pentatricopeptide repeat-containing protein At1g11290, chloroplastic2.2e-2486.49Show/hide
Query:  STTHLQSKSIYAFFEELRDEIKVADYVPDTNSIQDVEDDVQEQLLNSHSEKLAITFGLLNTSPDTTIHVRKNLR
        STTH QSK IYAF EEL  EIK A YVPDTNSI DVEDDVQEQLLNSHSEKLAI FGLLNTSP TTIHVRKNLR
Subjt:  STTHLQSKSIYAFFEELRDEIKVADYVPDTNSIQDVEDDVQEQLLNSHSEKLAITFGLLNTSPDTTIHVRKNLR

A0A1S3BEJ2 pentatricopeptide repeat-containing protein At1g11290, chloroplastic1.3e-3245.83Show/hide
Query:  MTGVVNLCAKCRQIDDAYKVFDRMPQRDLVFWGAIMA---------------------GPRPDLITFVTVLPAVADVRSFV----RHGYAIRAGFAKLVN
        MTGVVN+ AKCRQI+DAYK+FDRMP+RDLV W  I+A                     G RPD IT VTVLPA AD+ S +     HGYAIRAGFAKLVN
Subjt:  MTGVVNLCAKCRQIDDAYKVFDRMPQRDLVFWGAIMA---------------------GPRPDLITFVTVLPAVADVRSFV----RHGYAIRAGFAKLVN

Query:  ISTAL----------------------RTVVSWNSMIVGYVQSGEPEMAIA----GGRDRDKLSNVILVEALNAYADLGDRKRSTTHLQSKSIYAFFEEL
        ISTAL                      +TVVSWNSM+ GYVQSGEPEMA+A       +  + +NV +++AL+A ADLGD +        KS++     L
Subjt:  ISTAL----------------------RTVVSWNSMIVGYVQSGEPEMAIA----GGRDRDKLSNVILVEALNAYADLGDRKRSTTHLQSKSIYAFFEEL

Query:  RDEIKVADYVPDTNSI
         D++K+   +   NS+
Subjt:  RDEIKVADYVPDTNSI

A0A5D3CX30 Pentatricopeptide repeat-containing protein2.6e-3348.77Show/hide
Query:  MTGVVNLCAKCRQIDDAYKVFDRMPQRDLVFWGAIMA---------------------GPRPDLITFVTVLPAVADVRSFV----RHGYAIRAGFAKLVN
        MTGVVN+ AKCRQIDDAYK+FDRMP+RDLV W  I+A                     G RPD IT VTVLPA ADV S +     HGYAIRAGFAKLVN
Subjt:  MTGVVNLCAKCRQIDDAYKVFDRMPQRDLVFWGAIMA---------------------GPRPDLITFVTVLPAVADVRSFV----RHGYAIRAGFAKLVN

Query:  ISTAL----------------------RTVVSWNSMIVGYVQSGEPEMAIA-------GGRDRDKLSNVILVEALNAYADLGDRKRSTTHLQSKSIYAFF
        ISTAL                      +TVVSWNSM+ GYVQ+GEPE AIA        G D    ++V ++EAL+A ADLGD +R       K ++ F 
Subjt:  ISTAL----------------------RTVVSWNSMIVGYVQSGEPEMAIA-------GGRDRDKLSNVILVEALNAYADLGDRKRSTTHLQSKSIYAFF

Query:  EEL
        ++L
Subjt:  EEL

A0A5D3CX30 Pentatricopeptide repeat-containing protein2.2e-2486.49Show/hide
Query:  STTHLQSKSIYAFFEELRDEIKVADYVPDTNSIQDVEDDVQEQLLNSHSEKLAITFGLLNTSPDTTIHVRKNLR
        STTH QSK IYAF EEL  EIK A YVPDTNSI DVEDDVQEQLLNSHSEKLAI FGLLNTSP TTIHVRKNLR
Subjt:  STTHLQSKSIYAFFEELRDEIKVADYVPDTNSIQDVEDDVQEQLLNSHSEKLAITFGLLNTSPDTTIHVRKNLR

A0A5D3CX30 Pentatricopeptide repeat-containing protein2.6e-3348.77Show/hide
Query:  MTGVVNLCAKCRQIDDAYKVFDRMPQRDLVFWGAIMA---------------------GPRPDLITFVTVLPAVADVRSFV----RHGYAIRAGFAKLVN
        MTGVVN+ AKCRQIDDAYK+FDRMP+RDLV W  I+A                     G RPD IT VTVLPA ADV S +     HGYAIRAGFAKLVN
Subjt:  MTGVVNLCAKCRQIDDAYKVFDRMPQRDLVFWGAIMA---------------------GPRPDLITFVTVLPAVADVRSFV----RHGYAIRAGFAKLVN

Query:  ISTAL----------------------RTVVSWNSMIVGYVQSGEPEMAIA-------GGRDRDKLSNVILVEALNAYADLGDRKRSTTHLQSKSIYAFF
        ISTAL                      +TVVSWNSM+ GYVQ+GEPE AIA        G D    ++V ++EAL+A ADLGD +R       K ++ F 
Subjt:  ISTAL----------------------RTVVSWNSMIVGYVQSGEPEMAIA-------GGRDRDKLSNVILVEALNAYADLGDRKRSTTHLQSKSIYAFF

Query:  EEL
        ++L
Subjt:  EEL

A0A6J1CD18 pentatricopeptide repeat-containing protein At1g11290, chloroplastic isoform X12.1e-2279.73Show/hide
Query:  STTHLQSKSIYAFFEELRDEIKVADYVPDTNSIQDVEDDVQEQLLNSHSEKLAITFGLLNTSPDTTIHVRKNLR
        ST+H QSK IYAF EEL DEI+ A YVPDTN I DVEDDVQEQLLNSHSEKLAI FGLLNT   TTIH+RKNLR
Subjt:  STTHLQSKSIYAFFEELRDEIKVADYVPDTNSIQDVEDDVQEQLLNSHSEKLAITFGLLNTSPDTTIHVRKNLR

A0A6J1CD18 pentatricopeptide repeat-containing protein At1g11290, chloroplastic isoform X11.3e-3245.83Show/hide
Query:  MTGVVNLCAKCRQIDDAYKVFDRMPQRDLVFWGAIMA---------------------GPRPDLITFVTVLPAVADVRSFV----RHGYAIRAGFAKLVN
        MTGVVN+ AKCRQI+DAYK+FDRMP+RDLV W  I+A                     G RPD IT VTVLPA AD+ S +     HGYAIRAGFAKLVN
Subjt:  MTGVVNLCAKCRQIDDAYKVFDRMPQRDLVFWGAIMA---------------------GPRPDLITFVTVLPAVADVRSFV----RHGYAIRAGFAKLVN

Query:  ISTAL----------------------RTVVSWNSMIVGYVQSGEPEMAIA----GGRDRDKLSNVILVEALNAYADLGDRKRSTTHLQSKSIYAFFEEL
        ISTAL                      +TVVSWNSM+ GYVQSGEPEMA+A       +  + +NV +++AL+A ADLGD +        KS++     L
Subjt:  ISTAL----------------------RTVVSWNSMIVGYVQSGEPEMAIA----GGRDRDKLSNVILVEALNAYADLGDRKRSTTHLQSKSIYAFFEEL

Query:  RDEIKVADYVPDTNSI
         D++K+   +   NS+
Subjt:  RDEIKVADYVPDTNSI

A0A6J1CEW2 pentatricopeptide repeat-containing protein At1g11290, chloroplastic isoform X22.1e-2279.73Show/hide
Query:  STTHLQSKSIYAFFEELRDEIKVADYVPDTNSIQDVEDDVQEQLLNSHSEKLAITFGLLNTSPDTTIHVRKNLR
        ST+H QSK IYAF EEL DEI+ A YVPDTN I DVEDDVQEQLLNSHSEKLAI FGLLNT   TTIH+RKNLR
Subjt:  STTHLQSKSIYAFFEELRDEIKVADYVPDTNSIQDVEDDVQEQLLNSHSEKLAITFGLLNTSPDTTIHVRKNLR

A0A6J1CEW2 pentatricopeptide repeat-containing protein At1g11290, chloroplastic isoform X21.7e-3248.28Show/hide
Query:  MTGVVNLCAKCRQIDDAYKVFDRMPQRDLVFWGAIMA---------------------GPRPDLITFVTVLPAVADVRSFV----RHGYAIRAGFAKLVN
        MTGVVN+ AKCRQIDDAYK+FDRMP+RDLV W  I+A                     G RPD IT VTVLPA ADV   +     HGYAIRAGFAKLVN
Subjt:  MTGVVNLCAKCRQIDDAYKVFDRMPQRDLVFWGAIMA---------------------GPRPDLITFVTVLPAVADVRSFV----RHGYAIRAGFAKLVN

Query:  ISTAL----------------------RTVVSWNSMIVGYVQSGEPEMAIA-------GGRDRDKLSNVILVEALNAYADLGDRKRSTTHLQSKSIYAFF
        ISTAL                      +TVVSWNSM+ GYVQ+GEPE AIA        G D    + V ++EAL+A ADLGD +R       K ++ F 
Subjt:  ISTAL----------------------RTVVSWNSMIVGYVQSGEPEMAIA-------GGRDRDKLSNVILVEALNAYADLGDRKRSTTHLQSKSIYAFF

Query:  EEL
        ++L
Subjt:  EEL

SwissProt top hitse value%identityAlignment
Q3E6Q1 Pentatricopeptide repeat-containing protein At1g11290, chloroplastic1.1e-2340.98Show/hide
Query:  MTGVVNLCAKCRQIDDAYKVFDRMPQRDLVFWGAIMAG---------------------PRPDLITFVTVLPAVADVRSF----VRHGYAIRAGFAKLVN
        MTG+ N+ AKCRQ+++A KVFDRMP+RDLV W  I+AG                      +P  IT V+VLPAV+ +R        HGYA+R+GF  LVN
Subjt:  MTGVVNLCAKCRQIDDAYKVFDRMPQRDLVFWGAIMAG---------------------PRPDLITFVTVLPAVADVRSF----VRHGYAIRAGFAKLVN

Query:  ISTAL----------------------RTVVSWNSMIVGYVQSGEPEMAIAGGR----DRDKLSNVILVEALNAYADLGDRKR
        ISTAL                      R VVSWNSMI  YVQ+  P+ A+   +    +  K ++V ++ AL+A ADLGD +R
Subjt:  ISTAL----------------------RTVVSWNSMIVGYVQSGEPEMAIAGGR----DRDKLSNVILVEALNAYADLGDRKR

Q3E6Q1 Pentatricopeptide repeat-containing protein At1g11290, chloroplastic9.2e-2068.92Show/hide
Query:  STTHLQSKSIYAFFEELRDEIKVADYVPDTNSIQDVEDDVQEQLLNSHSEKLAITFGLLNTSPDTTIHVRKNLR
        ST H  SK IYAF E+L   IK A YVPDTN +  VE+DV+EQLL++HSEKLAI+FGLLNT+  TTIHVRKNLR
Subjt:  STTHLQSKSIYAFFEELRDEIKVADYVPDTNSIQDVEDDVQEQLLNSHSEKLAITFGLLNTSPDTTIHVRKNLR

Q7Y211 Pentatricopeptide repeat-containing protein At3g57430, chloroplastic3.5e-1150Show/hide
Query:  TTHLQSKSIYAFFEELRDEIKVADYVPDTNSI-QDVEDDVQEQLLNSHSEKLAITFGLLNTSPDTTIHVRKNLR
        ++H QS+ +  + E L + ++   YVPDT+ +  +VE+D +E LL  HSEKLAI FG+LNTSP T I V KNLR
Subjt:  TTHLQSKSIYAFFEELRDEIKVADYVPDTNSI-QDVEDDVQEQLLNSHSEKLAITFGLLNTSPDTTIHVRKNLR

Q9LW32 Pentatricopeptide repeat-containing protein At3g26782, mitochondrial3.8e-1325.85Show/hide
Query:  TGVVNLCAKCRQIDDAYKVFDRMPQRDLVFWGAIMA---------------------GPRPDLITFVTVLPAVADVRSFV--------------------
        T ++++  KC +++ A K FDRM  +++  W A++A                     G RP+ ITFV+VL A +     V                    
Subjt:  TGVVNLCAKCRQIDDAYKVFDRMPQRDLVFWGAIMA---------------------GPRPDLITFVTVLPAVADVRSFV--------------------

Query:  RHGYAI----RAGFAK----LVNISTALRTVVSWNSMIVG-----YVQSGEPEMAIAGGRDRDKLSNVILVEALNAYADLG-----DRKR----------
         +G  +    RAGF +    L+         + W+S++        V+  E  +A     D       +L+   + YAD G     +R R          
Subjt:  RHGYAI----RAGFAK----LVNISTALRTVVSWNSMIVG-----YVQSGEPEMAIAGGRDRDKLSNVILVEALNAYADLG-----DRKR----------

Query:  -------------------STTHLQSKSIYAFFEELRDEIKVADYVPDTNSI-QDVEDDVQEQLLNSHSEKLAITFGLLNTSPDTTIHVRKNLR
                              H Q + IY F  EL  ++  A YV +T+S+  DV+++ +E  L  HSEKLAI FG++NT P +T++V KNLR
Subjt:  -------------------STTHLQSKSIYAFFEELRDEIKVADYVPDTNSI-QDVEDDVQEQLLNSHSEKLAITFGLLNTSPDTTIHVRKNLR

Q9SHZ8 Pentatricopeptide repeat-containing protein At2g220702.4e-1250.68Show/hide
Query:  THLQSKSIYAFFEELRDEIKVADYVPDTNSI-QDVEDDVQEQLLNSHSEKLAITFGLLNTSPDTTIHVRKNLR
        TH +   IY   +++ DEIK   YVPDT S+  D+E++V+EQ+L  HSEKLAI FGL++T   TT+ + KNLR
Subjt:  THLQSKSIYAFFEELRDEIKVADYVPDTNSI-QDVEDDVQEQLLNSHSEKLAITFGLLNTSPDTTIHVRKNLR

Q9SZT8 Pentatricopeptide repeat-containing protein ELI1, chloroplastic3.0e-1043.75Show/hide
Query:  GDRKRSTTHLQSKSIYAFFEELRDEIKVADYVPDTNSI-QDVEDDVQEQLLNSHSEKLAITFGLLNTSPDTTIHVRKNLR
        GDR+    H +SK IY    ++ + IK   YVP+TN++ QD+E+  +EQ L  HSE+LAI +GL++T P + + + KNLR
Subjt:  GDRKRSTTHLQSKSIYAFFEELRDEIKVADYVPDTNSI-QDVEDDVQEQLLNSHSEKLAITFGLLNTSPDTTIHVRKNLR

Arabidopsis top hitse value%identityAlignment
AT1G11290.1 Pentatricopeptide repeat (PPR) superfamily protein7.5e-2540.98Show/hide
Query:  MTGVVNLCAKCRQIDDAYKVFDRMPQRDLVFWGAIMAG---------------------PRPDLITFVTVLPAVADVRSF----VRHGYAIRAGFAKLVN
        MTG+ N+ AKCRQ+++A KVFDRMP+RDLV W  I+AG                      +P  IT V+VLPAV+ +R        HGYA+R+GF  LVN
Subjt:  MTGVVNLCAKCRQIDDAYKVFDRMPQRDLVFWGAIMAG---------------------PRPDLITFVTVLPAVADVRSF----VRHGYAIRAGFAKLVN

Query:  ISTAL----------------------RTVVSWNSMIVGYVQSGEPEMAIAGGR----DRDKLSNVILVEALNAYADLGDRKR
        ISTAL                      R VVSWNSMI  YVQ+  P+ A+   +    +  K ++V ++ AL+A ADLGD +R
Subjt:  ISTAL----------------------RTVVSWNSMIVGYVQSGEPEMAIAGGR----DRDKLSNVILVEALNAYADLGDRKR

AT1G11290.1 Pentatricopeptide repeat (PPR) superfamily protein6.6e-2168.92Show/hide
Query:  STTHLQSKSIYAFFEELRDEIKVADYVPDTNSIQDVEDDVQEQLLNSHSEKLAITFGLLNTSPDTTIHVRKNLR
        ST H  SK IYAF E+L   IK A YVPDTN +  VE+DV+EQLL++HSEKLAI+FGLLNT+  TTIHVRKNLR
Subjt:  STTHLQSKSIYAFFEELRDEIKVADYVPDTNSIQDVEDDVQEQLLNSHSEKLAITFGLLNTSPDTTIHVRKNLR

AT2G22070.1 pentatricopeptide (PPR) repeat-containing protein1.7e-1350.68Show/hide
Query:  THLQSKSIYAFFEELRDEIKVADYVPDTNSI-QDVEDDVQEQLLNSHSEKLAITFGLLNTSPDTTIHVRKNLR
        TH +   IY   +++ DEIK   YVPDT S+  D+E++V+EQ+L  HSEKLAI FGL++T   TT+ + KNLR
Subjt:  THLQSKSIYAFFEELRDEIKVADYVPDTNSI-QDVEDDVQEQLLNSHSEKLAITFGLLNTSPDTTIHVRKNLR

AT3G26782.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.7e-1425.85Show/hide
Query:  TGVVNLCAKCRQIDDAYKVFDRMPQRDLVFWGAIMA---------------------GPRPDLITFVTVLPAVADVRSFV--------------------
        T ++++  KC +++ A K FDRM  +++  W A++A                     G RP+ ITFV+VL A +     V                    
Subjt:  TGVVNLCAKCRQIDDAYKVFDRMPQRDLVFWGAIMA---------------------GPRPDLITFVTVLPAVADVRSFV--------------------

Query:  RHGYAI----RAGFAK----LVNISTALRTVVSWNSMIVG-----YVQSGEPEMAIAGGRDRDKLSNVILVEALNAYADLG-----DRKR----------
         +G  +    RAGF +    L+         + W+S++        V+  E  +A     D       +L+   + YAD G     +R R          
Subjt:  RHGYAI----RAGFAK----LVNISTALRTVVSWNSMIVG-----YVQSGEPEMAIAGGRDRDKLSNVILVEALNAYADLG-----DRKR----------

Query:  -------------------STTHLQSKSIYAFFEELRDEIKVADYVPDTNSI-QDVEDDVQEQLLNSHSEKLAITFGLLNTSPDTTIHVRKNLR
                              H Q + IY F  EL  ++  A YV +T+S+  DV+++ +E  L  HSEKLAI FG++NT P +T++V KNLR
Subjt:  -------------------STTHLQSKSIYAFFEELRDEIKVADYVPDTNSI-QDVEDDVQEQLLNSHSEKLAITFGLLNTSPDTTIHVRKNLR

AT3G57430.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.5e-1250Show/hide
Query:  TTHLQSKSIYAFFEELRDEIKVADYVPDTNSI-QDVEDDVQEQLLNSHSEKLAITFGLLNTSPDTTIHVRKNLR
        ++H QS+ +  + E L + ++   YVPDT+ +  +VE+D +E LL  HSEKLAI FG+LNTSP T I V KNLR
Subjt:  TTHLQSKSIYAFFEELRDEIKVADYVPDTNSI-QDVEDDVQEQLLNSHSEKLAITFGLLNTSPDTTIHVRKNLR

AT4G37380.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.1e-1143.75Show/hide
Query:  GDRKRSTTHLQSKSIYAFFEELRDEIKVADYVPDTNSI-QDVEDDVQEQLLNSHSEKLAITFGLLNTSPDTTIHVRKNLR
        GDR+    H +SK IY    ++ + IK   YVP+TN++ QD+E+  +EQ L  HSE+LAI +GL++T P + + + KNLR
Subjt:  GDRKRSTTHLQSKSIYAFFEELRDEIKVADYVPDTNSI-QDVEDDVQEQLLNSHSEKLAITFGLLNTSPDTTIHVRKNLR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGGCGTTGTGAATTTGTGCGCTAAATGCAGGCAGATTGATGATGCGTACAAGGTGTTCGACAGAATGCCTCAGAGAGATTTGGTGTTTTGGGGTGCAATTATGGC
TGGGCCAAGGCCTGATTTGATTACATTTGTTACTGTTTTGCCTGCTGTTGCTGATGTTCGGTCATTCGTTCGTCACGGGTATGCCATTAGAGCTGGGTTTGCAAAGCTTG
TTAATATTTCAACTGCTCTGAGGACTGTTGTGTCATGGAACTCCATGATTGTTGGATATGTGCAAAGTGGTGAACCAGAGATGGCTATTGCAGGAGGAAGGGATAGAGAT
AAGCTAAGCAATGTAATACTTGTGGAAGCTTTGAATGCCTATGCCGATTTGGGCGATCGCAAGAGGAGCACAACTCATTTACAATCTAAGAGCATATATGCCTTTTTTGA
AGAACTTAGAGATGAAATCAAGGTAGCTGATTATGTGCCAGATACTAACTCGATTCAAGATGTAGAAGACGATGTGCAGGAGCAGCTCCTCAATAGCCATAGCGAGAAGC
TCGCCATTACTTTTGGTCTTTTAAATACCAGTCCTGATACTACGATACACGTTCGAAAGAACCTACGAGGAGAGCGGTATACCTCTGTGAGAGAGAGATCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTGGCGTTGTGAATTTGTGCGCTAAATGCAGGCAGATTGATGATGCGTACAAGGTGTTCGACAGAATGCCTCAGAGAGATTTGGTGTTTTGGGGTGCAATTATGGC
TGGGCCAAGGCCTGATTTGATTACATTTGTTACTGTTTTGCCTGCTGTTGCTGATGTTCGGTCATTCGTTCGTCACGGGTATGCCATTAGAGCTGGGTTTGCAAAGCTTG
TTAATATTTCAACTGCTCTGAGGACTGTTGTGTCATGGAACTCCATGATTGTTGGATATGTGCAAAGTGGTGAACCAGAGATGGCTATTGCAGGAGGAAGGGATAGAGAT
AAGCTAAGCAATGTAATACTTGTGGAAGCTTTGAATGCCTATGCCGATTTGGGCGATCGCAAGAGGAGCACAACTCATTTACAATCTAAGAGCATATATGCCTTTTTTGA
AGAACTTAGAGATGAAATCAAGGTAGCTGATTATGTGCCAGATACTAACTCGATTCAAGATGTAGAAGACGATGTGCAGGAGCAGCTCCTCAATAGCCATAGCGAGAAGC
TCGCCATTACTTTTGGTCTTTTAAATACCAGTCCTGATACTACGATACACGTTCGAAAGAACCTACGAGGAGAGCGGTATACCTCTGTGAGAGAGAGATCTTGA
Protein sequenceShow/hide protein sequence
MTGVVNLCAKCRQIDDAYKVFDRMPQRDLVFWGAIMAGPRPDLITFVTVLPAVADVRSFVRHGYAIRAGFAKLVNISTALRTVVSWNSMIVGYVQSGEPEMAIAGGRDRD
KLSNVILVEALNAYADLGDRKRSTTHLQSKSIYAFFEELRDEIKVADYVPDTNSIQDVEDDVQEQLLNSHSEKLAITFGLLNTSPDTTIHVRKNLRGERYTSVRERS