CuGenDBv2

Gene ID	CmoCh04G013800
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	F-box-like domain-containing protein
Genome location	Cmo_Chr04:7031949..7032964
RNA-Seq Expression	CmoCh04G013800
Synteny	CmoCh04G013800
Gene Ontology terms	NA
InterPro domains	IPR040338 - Putative F-box protein At1g67623-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6601104.1 putative F-box protein, partial [Cucurbita argyrosperma subsp. sororia]

8.6e-107

77.47

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Query:  SEKLEDRSTMDNQNGAFYASPLAIESLPNDLLIEVLAKVAAFSFTHLVQAKLATKDFLEASSHGYIFQHASLGNFQKLLWNNSIEFWSFMEKCNNNENPE
        S+ L+ + +   +   F   P  IESLPNDLLIEVLAKVA FSFT LVQAKLATK FLEASSHGYIFQHASL NFQKLLWNN+ EFWSFMEKCNNN N +
Subjt:  SEKLEDRSTMDNQNGAFYASPLAIESLPNDLLIEVLAKVAAFSFTHLVQAKLATKDFLEASSHGYIFQHASLGNFQKLLWNNSIEFWSFMEKCNNNENPE

Query:  TLYRKGMLEFFTHCREAFGMTYLKLSAQKGYPKAC-------YATSLEDEGVKFLKICEAKLGLKLAECHWRVKEFVRYLWVKNKISLSEKDFDDQRDCE
        TLY+KGMLEFFTHCREA GM YLKLSAQKGYP+AC       YATSLEDEGVKFLKICEAKLG KLAEC  RVKEFVRYLWVKNKISL E D  DQR CE
Subjt:  TLYRKGMLEFFTHCREAFGMTYLKLSAQKGYPKAC-------YATSLEDEGVKFLKICEAKLGLKLAECHWRVKEFVRYLWVKNKISLSEKDFDDQRDCE

Query:  SVVKNSCKKNVKRIRWDENDGDDYYGEHTCEACKWDEEVLRFCNMLRTGNYDI
        +VVKN CKKNV+RI WD ND DDYYGEHTCEACKW+EEV RFCNMLRTG+YD+
Subjt:  SVVKNSCKKNVKRIRWDENDGDDYYGEHTCEACKWDEEVLRFCNMLRTGNYDI

XP_023549398.1 putative F-box protein At1g67623 [Cucurbita pepo subsp. pepo]

5.0e-107

77.08

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Query:  SEKLEDRSTMDNQNGAFYASPLAIESLPNDLLIEVLAKVAAFSFTHLVQAKLATKDFLEASSHGYIFQHASLGNFQKLLWNNSIEFWSFMEKCNNNENPE
        S+ L+ + +   +   F   P  IESLPNDLLIEVLAKVAAFSFT LVQAKLATK+FL+ASSHGYIFQHASL NFQKL+WNN+ EFWSFMEKCNNN NPE
Subjt:  SEKLEDRSTMDNQNGAFYASPLAIESLPNDLLIEVLAKVAAFSFTHLVQAKLATKDFLEASSHGYIFQHASLGNFQKLLWNNSIEFWSFMEKCNNNENPE

Query:  TLYRKGMLEFFTHCREAFGMTYLKLSAQKGYPKAC-------YATSLEDEGVKFLKICEAKLGLKLAECHWRVKEFVRYLWVKNKISLSEKDFDDQRDCE
        TLY+KGMLEFFTHCREA G+ YLKLSAQKGYP+ C       YA SLEDEGVKFLKICEAKLG KLAEC  RVKEFVRYLWVKNKISL EKD  DQR CE
Subjt:  TLYRKGMLEFFTHCREAFGMTYLKLSAQKGYPKAC-------YATSLEDEGVKFLKICEAKLGLKLAECHWRVKEFVRYLWVKNKISLSEKDFDDQRDCE

Query:  SVVKNSCKKNVKRIRWDENDGDDYYGEHTCEACKWDEEVLRFCNMLRTGNYDI
        SVVKN CKKNV+RI WD ND DDYY EHTCEACKW+EEV RFCNMLRTG+YD+
Subjt:  SVVKNSCKKNVKRIRWDENDGDDYYGEHTCEACKWDEEVLRFCNMLRTGNYDI

XP_023549459.1 putative F-box protein At1g67623 [Cucurbita pepo subsp. pepo]

5.0e-107

77.08

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Query:  SEKLEDRSTMDNQNGAFYASPLAIESLPNDLLIEVLAKVAAFSFTHLVQAKLATKDFLEASSHGYIFQHASLGNFQKLLWNNSIEFWSFMEKCNNNENPE
        S+ L+ + +   +   F   P  IESLPNDLLIEVLAKVAAFSFT LVQAKLATK+FL+ASSHGYIFQHASL NFQKL+WNN+ EFWSFMEKCNNN NPE
Subjt:  SEKLEDRSTMDNQNGAFYASPLAIESLPNDLLIEVLAKVAAFSFTHLVQAKLATKDFLEASSHGYIFQHASLGNFQKLLWNNSIEFWSFMEKCNNNENPE

Query:  TLYRKGMLEFFTHCREAFGMTYLKLSAQKGYPKAC-------YATSLEDEGVKFLKICEAKLGLKLAECHWRVKEFVRYLWVKNKISLSEKDFDDQRDCE
        TLY+KGMLEFFTHCREA G+ YLKLSAQKGYP+ C       YA SLEDEGVKFLKICEAKLG KLAEC  RVKEFVRYLWVKNKISL EKD  DQR CE
Subjt:  TLYRKGMLEFFTHCREAFGMTYLKLSAQKGYPKAC-------YATSLEDEGVKFLKICEAKLGLKLAECHWRVKEFVRYLWVKNKISLSEKDFDDQRDCE

Query:  SVVKNSCKKNVKRIRWDENDGDDYYGEHTCEACKWDEEVLRFCNMLRTGNYDI
        SVVKN CKKNV+RI WD ND DDYY EHTCEACKW+EEV RFCNMLRTG+YD+
Subjt:  SVVKNSCKKNVKRIRWDENDGDDYYGEHTCEACKWDEEVLRFCNMLRTGNYDI

XP_023549492.1 putative F-box protein At1g67623 [Cucurbita pepo subsp. pepo]

4.1e-109

77.13

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Query:  SEKLEDRSTMDNQNGAFYASPLAIESLPNDLLIEVLAKVAAFSFTHLVQAKLATKDFLEASSHGYIFQHASLGNFQKLLWNNSIEFWSFMEKCNNNENPE
        S+ L  + +   +     ASP  IESLPNDLLIEVLAKVAA SFT LVQAKLATK FLEAS+H YIFQHASL NFQKLLWNNS EFWSFMEKCNNN NPE
Subjt:  SEKLEDRSTMDNQNGAFYASPLAIESLPNDLLIEVLAKVAAFSFTHLVQAKLATKDFLEASSHGYIFQHASLGNFQKLLWNNSIEFWSFMEKCNNNENPE

Query:  TLYRKGMLEFFTHCREAFGMTYLKLSAQKGYPKAC-------YATSLEDEGVKFLKICEAKLGLKLAECHWRVKEFVRYLWVKNKISLSEKDFDDQRDCE
        TLYRKGMLEFFTHCREA GMTYLKLSAQKGYP AC       Y TS+EDEGVKFLKICEAKLG KL EC  RVKEFVRYLWVKNKIS+ +KD  D+R CE
Subjt:  TLYRKGMLEFFTHCREAFGMTYLKLSAQKGYPKAC-------YATSLEDEGVKFLKICEAKLGLKLAECHWRVKEFVRYLWVKNKISLSEKDFDDQRDCE

Query:  SVVKNSCKKNVKRIRWDENDGDDYYGEHTCEACKWDEEVLRFCNMLRTGNYDIRLGHL
        SV+KN CKKNV+RI WD ND DDYYGEHTCEACKW+ EVLRFCNMLRTG+YDI +GHL
Subjt:  SVVKNSCKKNVKRIRWDENDGDDYYGEHTCEACKWDEEVLRFCNMLRTGNYDIRLGHL

XP_023549584.1 putative F-box protein At1g67623 [Cucurbita pepo subsp. pepo]

1.2e-108

78.66

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Query:  SEKLEDRSTMDNQNGAFYASPLAIESLPNDLLIEVLAKVAAFSFTHLVQAKLATKDFLEASSHGYIFQHASLGNFQKLLWNNSIEFWSFMEKCNNNENPE
        S+ L+ + +   +   F   P  IESLPNDLLIEVLAKVAAFSFT LVQAKLATK+FLEASSHGYIFQHASL NFQKLLWNN+ EFWSFMEKCNNN NPE
Subjt:  SEKLEDRSTMDNQNGAFYASPLAIESLPNDLLIEVLAKVAAFSFTHLVQAKLATKDFLEASSHGYIFQHASLGNFQKLLWNNSIEFWSFMEKCNNNENPE

Query:  TLYRKGMLEFFTHCREAFGMTYLKLSAQKGYPKAC-------YATSLEDEGVKFLKICEAKLGLKLAECHWRVKEFVRYLWVKNKISLSEKDFDDQRDCE
        TLY KGMLEFFTHCREA GM YLKLSAQKGYP+AC       YA SLEDEGVKFLKICEAKLG KLAEC  RVKEFVRYLWVKNKISL EKD  DQR CE
Subjt:  TLYRKGMLEFFTHCREAFGMTYLKLSAQKGYPKAC-------YATSLEDEGVKFLKICEAKLGLKLAECHWRVKEFVRYLWVKNKISLSEKDFDDQRDCE

Query:  SVVKNSCKKNVKRIRWDENDGDDYYGEHTCEACKWDEEVLRFCNMLRTGNYDI
        SVVKN CKKNV+RI WD ND DDYYGEH CEACKW+EEV RFCNMLRTG+YD+
Subjt:  SVVKNSCKKNVKRIRWDENDGDDYYGEHTCEACKWDEEVLRFCNMLRTGNYDI

TrEMBL top hits

e value

%identity

Alignment

A0A6J1GYN4 putative F-box protein At1g67623

3.1e-102

78.1

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Query:  FYASPLAIESLPNDLLIEVLAKVAAFSFTHLVQAKLATKDFLEASSHGYIFQHASLGNFQKLLWNNSIEFWSFMEKCNNNENPETLYRKGMLEFFTHCRE
        F ASP  IESLPNDLLIEVLAKVAA S+T LV AKLATK FLEASSH YIFQHASL NF KLLWNNS EFWSFMEKCNNN NPETLYRKGMLEFFTHCRE
Subjt:  FYASPLAIESLPNDLLIEVLAKVAAFSFTHLVQAKLATKDFLEASSHGYIFQHASLGNFQKLLWNNSIEFWSFMEKCNNNENPETLYRKGMLEFFTHCRE

Query:  AFGMTYLKLSAQKGYPKAC-------YATSLEDEGVKFLKICEAKLGLKLAECHWRVKEFVRYLWVKNKISLSEKDFDDQRDCESVVKNSCKKNVKRIRW
        A GM YLKLSAQKGYP AC       YA S+EDEGVKFLKICEAKLG KLA+C  RVKEF+  LWVKNKI + E D  D+R CESV+KN CKKNV+R  W
Subjt:  AFGMTYLKLSAQKGYPKAC-------YATSLEDEGVKFLKICEAKLGLKLAECHWRVKEFVRYLWVKNKISLSEKDFDDQRDCESVVKNSCKKNVKRIRW

Query:  DENDGDDYYGEHTCEACKWDEEVLRFCNMLRTGNYDIRLGHL
        D ND DDYYGEHTCEACKW+ EVLRFCNMLRTG+YDI  G L
Subjt:  DENDGDDYYGEHTCEACKWDEEVLRFCNMLRTGNYDIRLGHL

A0A6J1GZQ6 F-box protein At2g35280-like

1.5e-101

78.9

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Query:  FYASPLAIESLPNDLLIEVLAKVAAFSFTHLVQAKLATKDFLEASSHGYIFQHASLGNFQKLLWNNSIEFWSFMEKCNNNENPETLYRKGMLEFFTHCRE
        F ASP  IESLPNDLLIEVLAKVAA SFT LV AKLATK FLEASSH YIFQHASL NF KLLWNNS EFWSFMEKCNNN NPETLYRKGMLEFFTHCRE
Subjt:  FYASPLAIESLPNDLLIEVLAKVAAFSFTHLVQAKLATKDFLEASSHGYIFQHASLGNFQKLLWNNSIEFWSFMEKCNNNENPETLYRKGMLEFFTHCRE

Query:  AFGMTYLKLSAQKGYPKAC-------YATSLEDEGVKFLKICEAKLGLKLAECHWRVKEFVRYLWVKNKISLSEKDFDDQRDCESVVKNSCKKNVKRIRW
        A GM YLKLSAQKGYP AC       YATS+EDEGVKFLKICEAKLG KLA+C  RVKEF+ YLWVKNKI + E D  ++R CESV+KN C+KNV+RI  
Subjt:  AFGMTYLKLSAQKGYPKAC-------YATSLEDEGVKFLKICEAKLGLKLAECHWRVKEFVRYLWVKNKISLSEKDFDDQRDCESVVKNSCKKNVKRIRW

Query:  DENDGDDYYGEHTCEACKWDEEVLRFCNMLRTGNYDI
        D ND DDYYGEHTCEACKW+ EVLRFCNMLRTG+Y+I
Subjt:  DENDGDDYYGEHTCEACKWDEEVLRFCNMLRTGNYDI

A0A6J1H022 putative F-box protein At1g67623

1.3e-105

82.4

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Query:  PLAIESLPNDLLIEVLAKVAAFSFTHLVQAKLATKDFLEASSHGYIFQHASLGNFQKLLWNNSIEFWSFMEKCNNNENPETLYRKGMLEFFTHCREAFGM
        P  IESLPNDLLIEVLAKVAAFSFT LVQAKLATK+FLEASSHGYIFQHASL NFQKLLWNN+ EFWSFMEKCNNN NPETLY+KGMLEFFT+CREA GM
Subjt:  PLAIESLPNDLLIEVLAKVAAFSFTHLVQAKLATKDFLEASSHGYIFQHASLGNFQKLLWNNSIEFWSFMEKCNNNENPETLYRKGMLEFFTHCREAFGM

Query:  TYLKLSAQKGYPKAC-------YATSLEDEGVKFLKICEAKLGLKLAECHWRVKEFVRYLWVKNKISLSEKDFDDQRDCESVVKNSCKKNVKRIRWDEND
         YLKLSAQKGY +AC       Y  S EDEGVKFLKICEAKLG KLAEC  RVKE VRYLWVKNKISLS+KD  DQR CESVVKN CKKNV+RI WD ND
Subjt:  TYLKLSAQKGYPKAC-------YATSLEDEGVKFLKICEAKLGLKLAECHWRVKEFVRYLWVKNKISLSEKDFDDQRDCESVVKNSCKKNVKRIRWDEND

Query:  GDDYYGEHTCEACKWDEEVLRFCNMLRTGNYDI
         DDYYGEHTCEACKW+EEV RFCNMLRTG+YD+
Subjt:  GDDYYGEHTCEACKWDEEVLRFCNMLRTGNYDI

A0A6J1JRV1 putative F-box protein At1g67623

3.5e-106

74.81

Show/hide

Query:  SEKLEDRSTMDNQNGAFYASPLAIESLPNDLLIEVLAKVAAFSFTHLVQAKLATKDFLEASSHGYIFQHASLGNFQKLLWNNSIEFWSFMEKCNNNENPE
        S+ L    +   +     ASP AIESLPNDLLIE+LAKVAA S+T LVQAKLATK FLEASSH YIFQHASL NF KLLWNNS EFWSFMEKCNNN NPE
Subjt:  SEKLEDRSTMDNQNGAFYASPLAIESLPNDLLIEVLAKVAAFSFTHLVQAKLATKDFLEASSHGYIFQHASLGNFQKLLWNNSIEFWSFMEKCNNNENPE

Query:  TLYRKGMLEFFTHCREAFGMTYLKLSAQKGYPKAC-------YATSLEDEGVKFLKICEAKLGLKLAECHWRVKEFVRYLWVKNKISLSEKDFDDQRDCE
        TLYRKGMLEFFTHCREA GMTYLK+SAQKGY +AC       YATS+EDEGVKFLKICE KLG KLAEC  RVKEFVR+LWVKNKIS+ EK  +D+R CE
Subjt:  TLYRKGMLEFFTHCREAFGMTYLKLSAQKGYPKAC-------YATSLEDEGVKFLKICEAKLGLKLAECHWRVKEFVRYLWVKNKISLSEKDFDDQRDCE

Query:  SVVKNSCKKNVKRIRWDENDGDDYYGEHTCEACKWDEEVLRFCNMLRTGNYDIRLGHL
        +V+KN CKKNV+RI WD ND D+YYGE+TCEACKW+ EVLRFCNMLRTG+YDI +GHL
Subjt:  SVVKNSCKKNVKRIRWDENDGDDYYGEHTCEACKWDEEVLRFCNMLRTGNYDIRLGHL

A0A6J1JRX4 putative F-box protein At1g67623

3.5e-106

74.81

Show/hide

Query:  SEKLEDRSTMDNQNGAFYASPLAIESLPNDLLIEVLAKVAAFSFTHLVQAKLATKDFLEASSHGYIFQHASLGNFQKLLWNNSIEFWSFMEKCNNNENPE
        S+ L  + +   +     ASP AIESLPNDLLIE+LAKVAA S+T LVQAKLATK FLEASSH YIFQHASL NF KLLWNNS EFWSFMEKCNNN NPE
Subjt:  SEKLEDRSTMDNQNGAFYASPLAIESLPNDLLIEVLAKVAAFSFTHLVQAKLATKDFLEASSHGYIFQHASLGNFQKLLWNNSIEFWSFMEKCNNNENPE

Query:  TLYRKGMLEFFTHCREAFGMTYLKLSAQKGYPKAC-------YATSLEDEGVKFLKICEAKLGLKLAECHWRVKEFVRYLWVKNKISLSEKDFDDQRDCE
        TLYRKGMLEFFTHCREA GMTYLK+SAQKGY +AC       YATS+EDEGVKFLKICE KLG KLAEC  RVKEFVR+LWVKNKIS+ EK  +D+R CE
Subjt:  TLYRKGMLEFFTHCREAFGMTYLKLSAQKGYPKAC-------YATSLEDEGVKFLKICEAKLGLKLAECHWRVKEFVRYLWVKNKISLSEKDFDDQRDCE

Query:  SVVKNSCKKNVKRIRWDENDGDDYYGEHTCEACKWDEEVLRFCNMLRTGNYDIRLGHL
        +V+KN CKKNV+RI WD ND D+YYGE+TCEACKW+ EVLRFCNMLRTG+YDI +GHL
Subjt:  SVVKNSCKKNVKRIRWDENDGDDYYGEHTCEACKWDEEVLRFCNMLRTGNYDIRLGHL

SwissProt top hits

e value

%identity

Alignment

Q9FXC7 Putative F-box protein At1g67623

1.4e-11

32.17

Show/hide

Query:  LAIESLPNDLLIEVLAKVAAFSFTHLVQAKLATKDFLEASSHGYIFQHASLGNFQKLLWNNSIEFWSFMEKCNNNENPETLYRKGMLEFFTHCREAFGMT
        L ++SLP DLL+E+ +   A S + +   +L +K F       Y+F   SL   + L W+ +     F+E+C  + NPE L++KG + +F    +  G+ 
Subjt:  LAIESLPNDLLIEVLAKVAAFSFTHLVQAKLATKDFLEASSHGYIFQHASLGNFQKLLWNNSIEFWSFMEKCNNNENPETLYRKGMLEFFTHCREAFGMT

Query:  YLKLSAQKGYPKACY
        YL  +A+KG  +A Y
Subjt:  YLKLSAQKGYPKACY

Arabidopsis top hits

e value

%identity

Alignment

AT1G67623.1 F-box family protein

1.0e-12

32.17

Show/hide

Query:  LAIESLPNDLLIEVLAKVAAFSFTHLVQAKLATKDFLEASSHGYIFQHASLGNFQKLLWNNSIEFWSFMEKCNNNENPETLYRKGMLEFFTHCREAFGMT
        L ++SLP DLL+E+ +   A S + +   +L +K F       Y+F   SL   + L W+ +     F+E+C  + NPE L++KG + +F    +  G+ 
Subjt:  LAIESLPNDLLIEVLAKVAAFSFTHLVQAKLATKDFLEASSHGYIFQHASLGNFQKLLWNNSIEFWSFMEKCNNNENPETLYRKGMLEFFTHCREAFGMT

Query:  YLKLSAQKGYPKACY
        YL  +A+KG  +A Y
Subjt:  YLKLSAQKGYPKACY

AT1G74875.1 FUNCTIONS IN: molecular_function unknown

1.2e-08

25.11

Show/hide

Query:  NDLLIEVLAKVAAFSFTHLVQAKLATKDFLEASSHGYIFQHASLGNFQKLLWNNSIEFWSFMEKCNNNENPETLYRKGMLEFF---THCREA-FGMTYLK
        N   I ++  V + S +     +L +K F   S+  YI Q  SL     L W N  +F +F ++C  + N E +YRKG++++F   +H R+   G+ ++ 
Subjt:  NDLLIEVLAKVAAFSFTHLVQAKLATKDFLEASSHGYIFQHASLGNFQKLLWNNSIEFWSFMEKCNNNENPETLYRKGMLEFF---THCREA-FGMTYLK

Query:  LSAQKGYPKACYATSLEDEGVKFLKICEAKLGLKLAECHWRVKEFVRY-LWVKNKISLSEKDFDDQRDC------------ESVVKNSCKKNVKR-----
         +A  G  +A Y   L       + IC   LG K  +  +++   +R  L + N I   EK     R+             +S V+ +C  + +      
Subjt:  LSAQKGYPKACYATSLEDEGVKFLKICEAKLGLKLAECHWRVKEFVRY-LWVKNKISLSEKDFDDQRDC------------ESVVKNSCKKNVKR-----

Query:  --IRWDENDGDDYYGEHTCEACKWDEEVLRF
           R    + DD      CE C    EV  F
Subjt:  --IRWDENDGDDYYGEHTCEACKWDEEVLRF

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCCGTTCATAAGTGAAAAGCTTGAAGATCGTAGCACGATGGACAACCAAAATGGCGCGTTTTATGCTTCTCCATTGGCCATAGAATCACTCCCAAATGATTTATTGAT
TGAAGTTTTGGCAAAAGTTGCCGCTTTTTCATTCACGCATTTAGTCCAAGCCAAATTAGCCACCAAGGATTTTCTCGAAGCATCAAGTCATGGCTACATATTCCAGCACG
CGTCCCTTGGAAACTTCCAGAAGCTTCTATGGAACAACAGCATAGAGTTTTGGTCGTTCATGGAAAAATGCAACAACAACGAGAACCCAGAGACTCTATACCGAAAGGGG
ATGCTAGAATTCTTCACCCATTGTAGAGAAGCTTTTGGAATGACATATTTAAAACTTTCTGCCCAAAAAGGCTACCCGAAAGCTTGTTATGCAACGAGTTTGGAGGATGA
GGGAGTGAAGTTCTTGAAGATTTGTGAGGCGAAATTAGGGCTTAAATTGGCTGAATGTCATTGGAGAGTTAAGGAATTTGTTCGTTATCTTTGGGTTAAGAACAAGATTT
CTTTGTCGGAAAAAGATTTCGATGACCAAAGAGACTGTGAGAGTGTAGTTAAGAATAGTTGTAAGAAGAACGTGAAAAGAATTAGATGGGATGAGAACGATGGGGATGAT
TATTATGGAGAACACACGTGCGAAGCGTGTAAATGGGATGAGGAAGTTTTGAGATTTTGTAATATGCTTAGAACTGGAAATTATGATATTAGGTTGGGGCACTTGTAA

mRNA sequence

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Protein sequence

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MPFISEKLEDRSTMDNQNGAFYASPLAIESLPNDLLIEVLAKVAAFSFTHLVQAKLATKDFLEASSHGYIFQHASLGNFQKLLWNNSIEFWSFMEKCNNNENPETLYRKG
MLEFFTHCREAFGMTYLKLSAQKGYPKACYATSLEDEGVKFLKICEAKLGLKLAECHWRVKEFVRYLWVKNKISLSEKDFDDQRDCESVVKNSCKKNVKRIRWDENDGDD
YYGEHTCEACKWDEEVLRFCNMLRTGNYDIRLGHL

CmoCh04G013800 (gene) of Cucurbita moschata (Rifu) v1 genome