| GenBank top hits | e value | %identity | Alignment |
|---|
| XP_022957413.1 DNA-directed RNA polymerase III subunit 2-like [Cucurbita moschata] | 4.7e-50 | 74.15 | Show/hide |
Query: MVVKPSGDASMNGKQVDDPNPIDSVNDKQFFGLPIKTAVDKFQLLPEFLKVRALIRVFYP-----------------------------RFPDVRIGEPY
MVVKPSGDASMNGKQVDDPNPIDSVNDKQFFGLPIKTAVDKFQLLPEFLKVR L++ FPDVRIGEPY
Subjt: MVVKPSGDASMNGKQVDDPNPIDSVNDKQFFGLPIKTAVDKFQLLPEFLKVRALIRVFYP-----------------------------RFPDVRIGEPY
Query: VTVNAVSETFKPHTCCLSDLTYNRLPITSVYIYGTNLLPKVKTQGNG
VTVNAVSETFKPHTCCLSDLTYNRLPITSVYIYGTNLLPKVKTQG G
Subjt: VTVNAVSETFKPHTCCLSDLTYNRLPITSVYIYGTNLLPKVKTQGNG
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| XP_022966941.1 DNA-directed RNA polymerase III subunit 2 isoform X1 [Cucurbita maxima] | 2.6e-24 | 56.91 | Show/hide |
Query: MVVKPSGDASMNGKQVDDPNPIDSVNDKQFFGLPIKTAVDKFQLLPEFLKVRALIR------------------------------VFYPRFPDVRIGEP
MVVKPSG S NGKQVDDPN I S DKQF GLPIK+AVDKFQLLPEFLKVR L+R Y RF DVR+GEP
Subjt: MVVKPSGDASMNGKQVDDPNPIDSVNDKQFFGLPIKTAVDKFQLLPEFLKVRALIR------------------------------VFYPRFPDVRIGEP
Query: YVTVNAVSETFKPHTCCLSDLTY
VT+NAVSE+ PH C LSDLTY
Subjt: YVTVNAVSETFKPHTCCLSDLTY
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| XP_022966941.1 DNA-directed RNA polymerase III subunit 2 isoform X1 [Cucurbita maxima] | 3.1e-09 | 77.78 | Show/hide |
Query: LLPKVKTQGNGLRVMLTRQPTEGRARNGGLRVGEMERNCSIAYGA
+L K+ +G+G RVMLTRQPTEGRARNGGLRVGEMER+C IAYGA
Subjt: LLPKVKTQGNGLRVMLTRQPTEGRARNGGLRVGEMERNCSIAYGA
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| XP_023550857.1 DNA-directed RNA polymerase III subunit 2-like isoform X1 [Cucurbita pepo subsp. pepo] | 2.3e-44 | 69.59 | Show/hide |
Query: MVVKPSGDASMNGKQVDDPNPIDSVNDKQFFGLPIKTAVDKFQLLPEFLKVR------------------------------ALIRVFYPRFPDVRIGEP
MVVKPS D SMN KQVDDPNPIDS DKQFF LPIK+AVDKFQ LPE +VR ALIRVFY RFPDVRIGEP
Subjt: MVVKPSGDASMNGKQVDDPNPIDSVNDKQFFGLPIKTAVDKFQLLPEFLKVR------------------------------ALIRVFYPRFPDVRIGEP
Query: YVTVNAVSETFKPHTCCLSDLTYNRLPITSVYIYGTNLLPKVKTQGNG
YVTVNAVSET KPHTCCLSDLT NRLPITSVYIYGTNLLPKVKTQG G
Subjt: YVTVNAVSETFKPHTCCLSDLTYNRLPITSVYIYGTNLLPKVKTQGNG
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| XP_023550866.1 DNA-directed RNA polymerase III subunit 2-like isoform X2 [Cucurbita pepo subsp. pepo] | 1.9e-43 | 69.66 | Show/hide |
Query: MVVKPSGDASMNGKQVDDPNPIDSVNDKQFFGLPIKTAVDKFQLLPEFLKVR------------------------------ALIRVFYPRFPDVRIGEP
MVVKPS D SMN KQVDDPNPIDS DKQFF LPIK+AVDKFQ LPE +VR ALIRVFY RFPDVRIGEP
Subjt: MVVKPSGDASMNGKQVDDPNPIDSVNDKQFFGLPIKTAVDKFQLLPEFLKVR------------------------------ALIRVFYPRFPDVRIGEP
Query: YVTVNAVSETFKPHTCCLSDLTYNRLPITSVYIYGTNLLPKVKTQ
YVTVNAVSET KPHTCCLSDLT NRLPITSVYIYGTNLLPKVKTQ
Subjt: YVTVNAVSETFKPHTCCLSDLTYNRLPITSVYIYGTNLLPKVKTQ
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| XP_023550876.1 DNA-directed RNA polymerase III subunit 2-like isoform X3 [Cucurbita pepo subsp. pepo] | 1.2e-40 | 68.28 | Show/hide |
Query: MVVKPSGDASMNGKQVDDPNPIDSVNDKQFFGLPIKTAVDKFQLLPEFLKVR------------------------------ALIRVFYPRFPDVRIGEP
MVVKPS D SMN KQVDDPNPIDS DKQFF LPIK+AVDKFQ LPE +VR ALIRVFY RFPDVRIGEP
Subjt: MVVKPSGDASMNGKQVDDPNPIDSVNDKQFFGLPIKTAVDKFQLLPEFLKVR------------------------------ALIRVFYPRFPDVRIGEP
Query: YVTVNAVSETFKPHTCCLSDLTYNRLPITSVYIYGTNLLPKVKTQ
YVTVNAVSET KPHTCCLSDLT LPITSVYIYGTNLLPKVKTQ
Subjt: YVTVNAVSETFKPHTCCLSDLTYNRLPITSVYIYGTNLLPKVKTQ
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7UBS2 DNA-directed RNA polymerase subunit beta | 1.5e-09 | 77.78 | Show/hide |
Query: LLPKVKTQGNGLRVMLTRQPTEGRARNGGLRVGEMERNCSIAYGA
+L K+ +G+G RVMLTRQPTEGRARNGGLRVGEMER+C IAYGA
Subjt: LLPKVKTQGNGLRVMLTRQPTEGRARNGGLRVGEMERNCSIAYGA
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| A0A6J1CEJ1 DNA-directed RNA polymerase subunit beta | 1.5e-09 | 77.78 | Show/hide |
Query: LLPKVKTQGNGLRVMLTRQPTEGRARNGGLRVGEMERNCSIAYGA
+L K+ +G+G RVMLTRQPTEGRARNGGLRVGEMER+C IAYGA
Subjt: LLPKVKTQGNGLRVMLTRQPTEGRARNGGLRVGEMERNCSIAYGA
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| A0A6J1CEJ1 DNA-directed RNA polymerase subunit beta | 1.3e-24 | 56.91 | Show/hide |
Query: MVVKPSGDASMNGKQVDDPNPIDSVNDKQFFGLPIKTAVDKFQLLPEFLKVRALIR------------------------------VFYPRFPDVRIGEP
MVVKPS D S NGKQVDDPN I S DKQF GLPIK+AVDKFQLLPEFLKVR L+R Y RF DVR+GEP
Subjt: MVVKPSGDASMNGKQVDDPNPIDSVNDKQFFGLPIKTAVDKFQLLPEFLKVRALIR------------------------------VFYPRFPDVRIGEP
Query: YVTVNAVSETFKPHTCCLSDLTY
VT+NAVSE+ PH C LSDLTY
Subjt: YVTVNAVSETFKPHTCCLSDLTY
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| A0A6J1G1X8 DNA-directed RNA polymerase subunit beta | 1.5e-09 | 77.78 | Show/hide |
Query: LLPKVKTQGNGLRVMLTRQPTEGRARNGGLRVGEMERNCSIAYGA
+L K+ +G+G RVMLTRQPTEGRARNGGLRVGEMER+C IAYGA
Subjt: LLPKVKTQGNGLRVMLTRQPTEGRARNGGLRVGEMERNCSIAYGA
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| A0A6J1G1X8 DNA-directed RNA polymerase subunit beta | 4.1e-23 | 56.91 | Show/hide |
Query: MVVKPSGDASMNGKQVDDPNPIDSVNDKQFFGLPIKTAVDKFQLLPEFLKVRALIR------------------------------VFYPRFPDVRIGEP
MVVK DAS N KQ DD NPIDS DKQF GLPIK+AVDKFQLLPEFLKVR L++ Y RF DVRIGEP
Subjt: MVVKPSGDASMNGKQVDDPNPIDSVNDKQFFGLPIKTAVDKFQLLPEFLKVRALIR------------------------------VFYPRFPDVRIGEP
Query: YVTVNAVSETFKPHTCCLSDLTY
VTVNAVSET PH C LSDLTY
Subjt: YVTVNAVSETFKPHTCCLSDLTY
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| A0A6J1H055 DNA-directed RNA polymerase | 2.3e-50 | 74.15 | Show/hide |
Query: MVVKPSGDASMNGKQVDDPNPIDSVNDKQFFGLPIKTAVDKFQLLPEFLKVRALIRVFYP-----------------------------RFPDVRIGEPY
MVVKPSGDASMNGKQVDDPNPIDSVNDKQFFGLPIKTAVDKFQLLPEFLKVR L++ FPDVRIGEPY
Subjt: MVVKPSGDASMNGKQVDDPNPIDSVNDKQFFGLPIKTAVDKFQLLPEFLKVRALIRVFYP-----------------------------RFPDVRIGEPY
Query: VTVNAVSETFKPHTCCLSDLTYNRLPITSVYIYGTNLLPKVKTQGNG
VTVNAVSETFKPHTCCLSDLTYNRLPITSVYIYGTNLLPKVKTQG G
Subjt: VTVNAVSETFKPHTCCLSDLTYNRLPITSVYIYGTNLLPKVKTQGNG
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| A0A6J1HQP0 DNA-directed RNA polymerase subunit beta | 1.3e-24 | 56.91 | Show/hide |
Query: MVVKPSGDASMNGKQVDDPNPIDSVNDKQFFGLPIKTAVDKFQLLPEFLKVRALIR------------------------------VFYPRFPDVRIGEP
MVVKPSG S NGKQVDDPN I S DKQF GLPIK+AVDKFQLLPEFLKVR L+R Y RF DVR+GEP
Subjt: MVVKPSGDASMNGKQVDDPNPIDSVNDKQFFGLPIKTAVDKFQLLPEFLKVRALIR------------------------------VFYPRFPDVRIGEP
Query: YVTVNAVSETFKPHTCCLSDLTY
VT+NAVSE+ PH C LSDLTY
Subjt: YVTVNAVSETFKPHTCCLSDLTY
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| A0A6J1HQP0 DNA-directed RNA polymerase subunit beta | 1.5e-09 | 77.78 | Show/hide |
Query: LLPKVKTQGNGLRVMLTRQPTEGRARNGGLRVGEMERNCSIAYGA
+L K+ +G+G RVMLTRQPTEGRARNGGLRVGEMER+C IAYGA
Subjt: LLPKVKTQGNGLRVMLTRQPTEGRARNGGLRVGEMERNCSIAYGA
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| A0A6J1HQP0 DNA-directed RNA polymerase subunit beta | 1.3e-24 | 57.72 | Show/hide |
Query: MVVKPSGDASMNGKQVDDPNPIDSVNDKQFFGLPIKTAVDKFQLLPEFLKVRALIR------------------------------VFYPRFPDVRIGEP
MVV+PS DAS GKQVD P+PIDS DKQF GLPIK+AVDKFQLLPEFLKVR L+R Y +F DVRIGEP
Subjt: MVVKPSGDASMNGKQVDDPNPIDSVNDKQFFGLPIKTAVDKFQLLPEFLKVRALIR------------------------------VFYPRFPDVRIGEP
Query: YVTVNAVSETFKPHTCCLSDLTY
VTVNAVSET PH C LSDLTY
Subjt: YVTVNAVSETFKPHTCCLSDLTY
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| F4KD38 DNA-directed RNA polymerase III subunit 2 | 7.7e-11 | 68.89 | Show/hide |
Query: LLPKVKTQGNGLRVMLTRQPTEGRARNGGLRVGEMERNCSIAYGA
+L K+ +G+G RVM+TRQPTEG+++NGGLRVGEMER+C IAYGA
Subjt: LLPKVKTQGNGLRVMLTRQPTEGRARNGGLRVGEMERNCSIAYGA
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| F4KD38 DNA-directed RNA polymerase III subunit 2 | 4.5e-03 | 55.88 | Show/hide |
Query: DSVNDKQFFGLPIKTAVDKFQLLPEFLKVRALIR
D DK+ PIK+ DKFQL+PEFLKVR L++
Subjt: DSVNDKQFFGLPIKTAVDKFQLLPEFLKVRALIR
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| P22276 DNA-directed RNA polymerase III subunit RPC2 | 4.2e-09 | 64.44 | Show/hide |
Query: LLPKVKTQGNGLRVMLTRQPTEGRARNGGLRVGEMERNCSIAYGA
+L K+ + G R +LTRQPTEGR+R+GGLR+GEMER+C IAYGA
Subjt: LLPKVKTQGNGLRVMLTRQPTEGRARNGGLRVGEMERNCSIAYGA
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| Q10233 DNA-directed RNA polymerase III subunit RPC2 | 7.2e-09 | 62.22 | Show/hide |
Query: LLPKVKTQGNGLRVMLTRQPTEGRARNGGLRVGEMERNCSIAYGA
++ K+ + G R +LTRQPTEGR+R+GGLR+GEMER+C IAYGA
Subjt: LLPKVKTQGNGLRVMLTRQPTEGRARNGGLRVGEMERNCSIAYGA
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| Q54IZ9 DNA-directed RNA polymerase III subunit rpc2 | 1.2e-08 | 61.7 | Show/hide |
Query: LLPKVKTQGNGLRVMLTRQPTEGRARNGGLRVGEMERNCSIAYGAHA
++ K+ + G V LTRQPTEGRAR GGLR+GEMER+C I YGA A
Subjt: LLPKVKTQGNGLRVMLTRQPTEGRARNGGLRVGEMERNCSIAYGAHA
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| Q9NW08 DNA-directed RNA polymerase III subunit RPC2 | 1.2e-08 | 62.22 | Show/hide |
Query: LLPKVKTQGNGLRVMLTRQPTEGRARNGGLRVGEMERNCSIAYGA
+L K+ + G R +LTRQPTEGR+R+GGLR+GEMER+C I YGA
Subjt: LLPKVKTQGNGLRVMLTRQPTEGRARNGGLRVGEMERNCSIAYGA
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| Arabidopsis top hits | e value | %identity | Alignment |
|---|
| AT3G18090.1 nuclear RNA polymerase D2B | 5.8e-06 | 50.91 | Show/hide |
Query: KVKTQGNGLRVMLTRQPTEGRARNGGLRVGEMERNCSIAYGAHADFR----TLND
KVK + G LTRQP R R GG+R GEMER+C IA+GA A+ TL+D
Subjt: KVKTQGNGLRVMLTRQPTEGRARNGGLRVGEMERNCSIAYGAHADFR----TLND
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| AT3G23780.1 nuclear RNA polymerase D2A | 1.3e-05 | 49.09 | Show/hide |
Query: KVKTQGNGLRVMLTRQPTEGRARNGGLRVGEMERNCSIAYGAHADFR----TLND
KVK + G LTRQP R R GG++ GEMER+C IA+GA A+ TL+D
Subjt: KVKTQGNGLRVMLTRQPTEGRARNGGLRVGEMERNCSIAYGAHADFR----TLND
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| AT3G23780.2 nuclear RNA polymerase D2A | 1.3e-05 | 49.09 | Show/hide |
Query: KVKTQGNGLRVMLTRQPTEGRARNGGLRVGEMERNCSIAYGAHADFR----TLND
KVK + G LTRQP R R GG++ GEMER+C IA+GA A+ TL+D
Subjt: KVKTQGNGLRVMLTRQPTEGRARNGGLRVGEMERNCSIAYGAHADFR----TLND
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| AT4G21710.1 DNA-directed RNA polymerase family protein | 7.4e-09 | 37.5 | Show/hide |
Query: VTVNAVSETFKPHTCCLSDLTYNRL-------PITSVYIYGTNLLPKVK--------TQGNGLRVMLTRQPTEGRARNGGLRVGEMERNCSIAYGA
VTV+ +S+ H C + R+ P+T++ G ++K ++G G +LTRQP EGR+R+GGLR GEMER+C IA+GA
Subjt: VTVNAVSETFKPHTCCLSDLTYNRL-------PITSVYIYGTNLLPKVK--------TQGNGLRVMLTRQPTEGRARNGGLRVGEMERNCSIAYGA
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| AT5G45140.1 nuclear RNA polymerase C2 | 5.5e-12 | 68.89 | Show/hide |
Query: LLPKVKTQGNGLRVMLTRQPTEGRARNGGLRVGEMERNCSIAYGA
+L K+ +G+G RVM+TRQPTEG+++NGGLRVGEMER+C IAYGA
Subjt: LLPKVKTQGNGLRVMLTRQPTEGRARNGGLRVGEMERNCSIAYGA
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| AT5G45140.1 nuclear RNA polymerase C2 | 3.2e-04 | 55.88 | Show/hide |
Query: DSVNDKQFFGLPIKTAVDKFQLLPEFLKVRALIR
D DK+ PIK+ DKFQL+PEFLKVR L++
Subjt: DSVNDKQFFGLPIKTAVDKFQLLPEFLKVRALIR
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