; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh04G014000 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G014000
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionprotein LATERAL ROOT PRIMORDIUM 1-like
Genome locationCmo_Chr04:7135276..7141814
RNA-Seq ExpressionCmoCh04G014000
SyntenyCmoCh04G014000
Gene Ontology termsGO:0009734 - auxin-activated signaling pathway (biological process)
GO:0009851 - auxin biosynthetic process (biological process)
GO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR006510 - Zinc finger, lateral root primordium type 1
IPR006511 - SHORT INTERNODES, C-terminal
IPR007818 - SHI protein family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601127.1 Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. sororia]1.5e-16098.98Show/hide
Query:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDELSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGY
        MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDE+SDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGY
Subjt:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDELSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGY

Query:  DDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTAAAAAA
        DDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTT AAAAA
Subjt:  DDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTAAAAAA

Query:  STSNATTPRSFETTSSHQDASFKKSLPGQVQAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD
        STSNATTPRSFETTSSHQDASFKKSLPGQV+APAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD
Subjt:  STSNATTPRSFETTSSHQDASFKKSLPGQVQAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD

KAG7031925.1 Protein LATERAL ROOT PRIMORDIUM 1 [Cucurbita argyrosperma subsp. argyrosperma]3.7e-15997.97Show/hide
Query:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDELSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGY
        MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDE+SDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGY
Subjt:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDELSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGY

Query:  DDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTAAAAAA
        DDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTT    AA
Subjt:  DDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTAAAAAA

Query:  STSNATTPRSFETTSSHQDASFKKSLPGQVQAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD
        STSNATTPRSFETTSSHQDASFKKSLPGQV+APAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD
Subjt:  STSNATTPRSFETTSSHQDASFKKSLPGQVQAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD

XP_022956997.1 protein LATERAL ROOT PRIMORDIUM 1-like [Cucurbita moschata]5.5e-163100Show/hide
Query:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDELSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGY
        MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDELSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGY
Subjt:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDELSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGY

Query:  DDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTAAAAAA
        DDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTAAAAAA
Subjt:  DDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTAAAAAA

Query:  STSNATTPRSFETTSSHQDASFKKSLPGQVQAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD
        STSNATTPRSFETTSSHQDASFKKSLPGQVQAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD
Subjt:  STSNATTPRSFETTSSHQDASFKKSLPGQVQAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD

XP_022988928.1 protein LATERAL ROOT PRIMORDIUM 1-like isoform X2 [Cucurbita maxima]4.0e-15897.63Show/hide
Query:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDELSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGY
        MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDE+SDR RSLENLKRTQDFGFGKGDSLIGGGGNHGY
Subjt:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDELSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGY

Query:  DDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTAAAAAA
        DDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQT   AAAA
Subjt:  DDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTAAAAAA

Query:  STSNATTPRSFETTSSHQDASFKKSLPGQVQAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD
        STSNATTPRSFETTSSHQDASFKKSLPGQV+APAVFKCHRVTAISSG GELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD
Subjt:  STSNATTPRSFETTSSHQDASFKKSLPGQVQAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD

XP_023527541.1 protein LATERAL ROOT PRIMORDIUM 1-like [Cucurbita pepo subsp. pepo]1.1e-15897.97Show/hide
Query:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDELSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGY
        MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDE+SDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGY
Subjt:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDELSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGY

Query:  DDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTAAAAAA
        DDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTT   AAA
Subjt:  DDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTAAAAAA

Query:  STSNATTPRSFETTSSHQDASFKKSLPGQVQAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD
        STSNATTPRSFETTSSHQDASFKKSLPGQV+APAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSIS LHLESGNHLRD
Subjt:  STSNATTPRSFETTSSHQDASFKKSLPGQVQAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD

TrEMBL top hitse value%identityAlignment
A0A0A0KWX6 Uncharacterized protein3.1e-14086.14Show/hide
Query:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCL---QPPP-NQMPDELSDRSRSLENLKRTQDFGFGKGDSLIGGGG
        MLGLRDVLFIAPTPSSLHQ TQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCL   QPPP N  PD+++DR+R+ +NLKRTQDFGFGKG+SLI G G
Subjt:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCL---QPPP-NQMPDELSDRSRSLENLKRTQDFGFGKGDSLIGGGG

Query:  NHGYDDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATS----GSSGSSSAGAKRPKVLIPSQ
        N+G D+ VKGD GDGS+ VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPA+RRRERQMLVVMDGVAT+    GSSGSSSAGAKRP+VLIPSQ
Subjt:  NHGYDDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATS----GSSGSSSAGAKRPKVLIPSQ

Query:  TTAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGQVQAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNH
        + AAAAAASTSNATTPRSFETTSSHQDASFKKSLPG V+APAVF+CHRVTAISSGEGEL YQATVNIGGHVFKGFLYDQGAD KNA PSISHLHL+SGNH
Subjt:  TTAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGQVQAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNH

Query:  LRD
         R+
Subjt:  LRD

A0A1S3BFS5 protein LATERAL ROOT PRIMORDIUM 16.3e-14186.47Show/hide
Query:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCL---QPPP-NQMPDELSDRSRSLENLKRTQDFGFGKGDSLIGGGG
        MLGLRDVLFIAPTPSSLHQ TQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCL   QPPP N  PD+++DR+R+ +NLKRTQDFGFGKG+SLIGG G
Subjt:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCL---QPPP-NQMPDELSDRSRSLENLKRTQDFGFGKGDSLIGGGG

Query:  NHGYDDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATS----GSSGSSSAGAKRPKVLIPSQ
        N+G D+ VKGD GDGS+ VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPA+RRRERQMLVVMDGVAT+    GSSGSSSAGAKRP+VLIPSQ
Subjt:  NHGYDDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATS----GSSGSSSAGAKRPKVLIPSQ

Query:  TTAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGQVQAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNH
        + AAAAAASTSNATTPRSFETTSSHQDASFKKSLPG V+APAVF+CHRVTAISSGEGEL YQATVNIGGHVFKGFLYDQGAD KNA PSISHLHL+SGNH
Subjt:  TTAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGQVQAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNH

Query:  LRD
         R+
Subjt:  LRD

A0A5D3CCT8 Protein LATERAL ROOT PRIMORDIUM 18.6e-13882.13Show/hide
Query:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCL---QPPP-NQMPDELSDRSRSLENLKRTQDFGFGKGDSLIGGGG
        MLGLRDVLFIAPTPSSLHQ TQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCL   QPPP N  PD+++DR+R+ +NLKRTQDFGFGKG+SLIGG G
Subjt:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCL---QPPP-NQMPDELSDRSRSLENLKRTQDFGFGKGDSLIGGGG

Query:  NHGYDDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATS----GSSGSSSAGAKRPKVLIPSQ
        N+G D+ VKGD GDGS+ VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPA+RRRERQMLVVMDGVAT+    GSSGSSSAGAKRP+VLIPSQ
Subjt:  NHGYDDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATS----GSSGSSSAGAKRPKVLIPSQ

Query:  TTAAAAAASTSNATTPRSFETTSSHQ----------------DASFKKSLPGQVQAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVK
        + AAAAAASTSNATTPRSFETTSSHQ                DASFKKSLPG V+APAVF+CHRVTAISSGEGEL YQATVNIGGHVFKGFLYDQGAD K
Subjt:  TTAAAAAASTSNATTPRSFETTSSHQ----------------DASFKKSLPGQVQAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVK

Query:  NALPSISHLHLESGNHLRD
        NA PSISHLHL+SGNH R+
Subjt:  NALPSISHLHLESGNHLRD

A0A6J1GXY1 protein LATERAL ROOT PRIMORDIUM 1-like2.6e-163100Show/hide
Query:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDELSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGY
        MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDELSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGY
Subjt:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDELSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGY

Query:  DDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTAAAAAA
        DDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTAAAAAA
Subjt:  DDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTAAAAAA

Query:  STSNATTPRSFETTSSHQDASFKKSLPGQVQAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD
        STSNATTPRSFETTSSHQDASFKKSLPGQVQAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD
Subjt:  STSNATTPRSFETTSSHQDASFKKSLPGQVQAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD

A0A6J1JNR9 protein LATERAL ROOT PRIMORDIUM 1-like isoform X22.0e-15897.63Show/hide
Query:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDELSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGY
        MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDE+SDR RSLENLKRTQDFGFGKGDSLIGGGGNHGY
Subjt:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDELSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGY

Query:  DDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTAAAAAA
        DDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQT   AAAA
Subjt:  DDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTAAAAAA

Query:  STSNATTPRSFETTSSHQDASFKKSLPGQVQAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD
        STSNATTPRSFETTSSHQDASFKKSLPGQV+APAVFKCHRVTAISSG GELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD
Subjt:  STSNATTPRSFETTSSHQDASFKKSLPGQVQAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD

SwissProt top hitse value%identityAlignment
O65517 Protein SHI RELATED SEQUENCE 23.3e-3046.25Show/hide
Query:  CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTAAAAAASTSNATTPRSFETTS
        CRDCGN+AKK+C + RCRTCCK RG  CSTHV+STW+P +RRRERQ  + M    + G  GS S GA      IP +        ++S++  P S     
Subjt:  CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTAAAAAASTSNATTPRSFETTS

Query:  SHQDASFKKSLPGQVQAPAVFKCHRVTAI-SSGEGELTYQATVNIGGHVFKGFLYDQGAD
           +ASF    PG+V + A+F+C +++ +   G+G+  YQ TVNIGGH+FKG LYDQG +
Subjt:  SHQDASFKKSLPGQVQAPAVFKCHRVTAI-SSGEGELTYQATVNIGGHVFKGFLYDQGAD

Q94CK9 Protein LATERAL ROOT PRIMORDIUM 11.8e-5245.82Show/hide
Query:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDELSDRSR--SLENLKRTQDFGF-GKGDSLIGGGGN
        M+GLRDV  +A  P+  HQ+  +IS   H +    ++ ALG  VG+ PLL A    Q   +   + L +  R  +  N   TQ   F     + +G   N
Subjt:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDELSDRSR--SLENLKRTQDFGF-GKGDSLIGGGGN

Query:  HGYDDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTAAA
            +   G G  G+   C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV A+RRRERQ++       T+GSS S+S+G K+P+++   Q     
Subjt:  HGYDDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTAAA

Query:  AAASTSNATT-PRSFETTSSHQD-ASFKKSLPGQVQAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHL--ESGNH
        A + TS + T P+SFET+SS QD    +++ PGQV+A AVFKC RVTA+  G+ E  YQA V IGGHVFKGFLYDQG + K   PS+S LHL   + NH
Subjt:  AAASTSNATT-PRSFETTSSHQD-ASFKKSLPGQVQAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHL--ESGNH

Q9M2U4 Protein SHI RELATED SEQUENCE 61.6e-3247.65Show/hide
Query:  VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTAAAAAASTSNATTPRSFETT
        VCRDCGNRAKKEC + RCRTCCK RG +C THVKSTW+P+S  R                  SSS   ++ K+ I  Q        S+ N +      TT
Subjt:  VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTAAAAAASTSNATTPRSFETT

Query:  SSHQDASFKKSLPGQVQAPAVFKCHRVTAISSGE-GELTYQATVNIGGHVFKGFLYDQGADVKNALPSIS
        +S Q+  F++ LPG+++APAVFK  RVTAIS+ E  E+ YQATV I GH+FKGFL+  G D   A P +S
Subjt:  SSHQDASFKKSLPGQVQAPAVFKCHRVTAISSGE-GELTYQATVNIGGHVFKGFLYDQGADVKNALPSIS

Q9SD40 Protein SHI RELATED SEQUENCE 12.2e-2641.71Show/hide
Query:  GDSLIGGGGNHGYDDQVK-GDGGDGSLGV-CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRP
        G++   G G       ++ G  G GS GV C+DCGN+AKK+C + RCRTCCK RG  CSTHV+STWVPA++RRERQ  +      T    G S       
Subjt:  GDSLIGGGGNHGYDDQVK-GDGGDGSLGV-CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRP

Query:  KVLIPSQTTAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGQVQAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQG
           +P +      A S+S   T        SH       + P +V + AVF+C RV+++  GE E  YQ  V+IGGH+FKG LYD G
Subjt:  KVLIPSQTTAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGQVQAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQG

Q9XGX0 Protein SHORT INTERNODES3.5e-2744.91Show/hide
Query:  GDGSLG-VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGA--KRPKVLIPSQTTAAAAAASTSNA
        G GS G  C+DCGN++KK+C + RCRTCCK RG  C THVKSTWVPA++RRERQ  +      ++G       G+  KR +  IP+++T+ A     SN 
Subjt:  GDGSLG-VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGA--KRPKVLIPSQTTAAAAAASTSNA

Query:  TTPRSFETTSSHQDASFKKSLPGQVQAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQG
                TS  +  +F    P +V + AVF+C RV+++   E E  Y+  V+IGGHVFKG LYDQG
Subjt:  TTPRSFETTSSHQDASFKKSLPGQVQAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQG

Arabidopsis top hitse value%identityAlignment
AT3G54430.1 SHI-related sequence 61.1e-3347.65Show/hide
Query:  VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTAAAAAASTSNATTPRSFETT
        VCRDCGNRAKKEC + RCRTCCK RG +C THVKSTW+P+S  R                  SSS   ++ K+ I  Q        S+ N +      TT
Subjt:  VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTAAAAAASTSNATTPRSFETT

Query:  SSHQDASFKKSLPGQVQAPAVFKCHRVTAISSGE-GELTYQATVNIGGHVFKGFLYDQGADVKNALPSIS
        +S Q+  F++ LPG+++APAVFK  RVTAIS+ E  E+ YQATV I GH+FKGFL+  G D   A P +S
Subjt:  SSHQDASFKKSLPGQVQAPAVFKCHRVTAISSGE-GELTYQATVNIGGHVFKGFLYDQGADVKNALPSIS

AT4G36260.1 Lateral root primordium (LRP) protein-related2.4e-3146.25Show/hide
Query:  CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTAAAAAASTSNATTPRSFETTS
        CRDCGN+AKK+C + RCRTCCK RG  CSTHV+STW+P +RRRERQ  + M    + G  GS S GA      IP +        ++S++  P S     
Subjt:  CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTAAAAAASTSNATTPRSFETTS

Query:  SHQDASFKKSLPGQVQAPAVFKCHRVTAI-SSGEGELTYQATVNIGGHVFKGFLYDQGAD
           +ASF    PG+V + A+F+C +++ +   G+G+  YQ TVNIGGH+FKG LYDQG +
Subjt:  SHQDASFKKSLPGQVQAPAVFKCHRVTAI-SSGEGELTYQATVNIGGHVFKGFLYDQGAD

AT5G12330.1 Lateral root primordium (LRP) protein-related1.3e-5345.82Show/hide
Query:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDELSDRSR--SLENLKRTQDFGF-GKGDSLIGGGGN
        M+GLRDV  +A  P+  HQ+  +IS   H +    ++ ALG  VG+ PLL A    Q   +   + L +  R  +  N   TQ   F     + +G   N
Subjt:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDELSDRSR--SLENLKRTQDFGF-GKGDSLIGGGGN

Query:  HGYDDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTAAA
            +   G G  G+   C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV A+RRRERQ++       T+GSS S+S+G K+P+++   Q     
Subjt:  HGYDDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTAAA

Query:  AAASTSNATT-PRSFETTSSHQD-ASFKKSLPGQVQAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHL--ESGNH
        A + TS + T P+SFET+SS QD    +++ PGQV+A AVFKC RVTA+  G+ E  YQA V IGGHVFKGFLYDQG + K   PS+S LHL   + NH
Subjt:  AAASTSNATT-PRSFETTSSHQD-ASFKKSLPGQVQAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHL--ESGNH

AT5G12330.2 Lateral root primordium (LRP) protein-related1.3e-5345.82Show/hide
Query:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDELSDRSR--SLENLKRTQDFGF-GKGDSLIGGGGN
        M+GLRDV  +A  P+  HQ+  +IS   H +    ++ ALG  VG+ PLL A    Q   +   + L +  R  +  N   TQ   F     + +G   N
Subjt:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDELSDRSR--SLENLKRTQDFGF-GKGDSLIGGGGN

Query:  HGYDDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTAAA
            +   G G  G+   C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV A+RRRERQ++       T+GSS S+S+G K+P+++   Q     
Subjt:  HGYDDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTAAA

Query:  AAASTSNATT-PRSFETTSSHQD-ASFKKSLPGQVQAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHL--ESGNH
        A + TS + T P+SFET+SS QD    +++ PGQV+A AVFKC RVTA+  G+ E  YQA V IGGHVFKGFLYDQG + K   PS+S LHL   + NH
Subjt:  AAASTSNATT-PRSFETTSSHQD-ASFKKSLPGQVQAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHL--ESGNH

AT5G12330.4 Lateral root primordium (LRP) protein-related1.3e-5345.82Show/hide
Query:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDELSDRSR--SLENLKRTQDFGF-GKGDSLIGGGGN
        M+GLRDV  +A  P+  HQ+  +IS   H +    ++ ALG  VG+ PLL A    Q   +   + L +  R  +  N   TQ   F     + +G   N
Subjt:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDELSDRSR--SLENLKRTQDFGF-GKGDSLIGGGGN

Query:  HGYDDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTAAA
            +   G G  G+   C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV A+RRRERQ++       T+GSS S+S+G K+P+++   Q     
Subjt:  HGYDDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTAAA

Query:  AAASTSNATT-PRSFETTSSHQD-ASFKKSLPGQVQAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHL--ESGNH
        A + TS + T P+SFET+SS QD    +++ PGQV+A AVFKC RVTA+  G+ E  YQA V IGGHVFKGFLYDQG + K   PS+S LHL   + NH
Subjt:  AAASTSNATT-PRSFETTSSHQD-ASFKKSLPGQVQAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHL--ESGNH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATATATCCCTTTGTTGTTTCCATCTCATTTTGATATCTGGGCTCTTAGAAGCTGAAAGATTTTGGGTACCTCTAAGACGAGGTGTGGCTGAAGAGAGTGAGAATAG
GAAGAAGAAAGAAGCATGGTGGAGAAGTAGGGTTAGATTAACCCTCTTTCATTCTCAATCTCAATTTCCAGACCTTTCTTTCTCCTTTTGTGTTAATACAACAATGTTGG
GTCTCCGTGATGTTCTATTTATAGCACCGACGCCTTCTTCTCTTCACCAACATACCCAAATCATTTCTTCTGATCATCACCCATCTCTTCCTCTGCCCTCCTCCACCGCT
CTTGGCGTCAGCGTCGGTATTTTCCCCCTTCTTGCTGCAACCCCATGTCTCCAGCCGCCGCCTAATCAGATGCCTGATGAACTGAGTGATCGTAGTCGGAGTTTGGAGAA
TCTAAAGAGAACCCAGGATTTTGGGTTTGGAAAAGGGGATTCGTTGATCGGCGGTGGCGGAAATCATGGCTACGACGACCAAGTGAAAGGCGATGGTGGCGATGGTTCTC
TGGGTGTGTGTAGAGACTGTGGAAACAGAGCAAAGAAGGAGTGCGAGTATCGGAGGTGTAGGACTTGTTGTAAAGGACGTGGGAATCATTGCTCTACGCACGTGAAGAGC
ACGTGGGTGCCGGCATCGCGCCGCCGTGAGCGGCAGATGTTGGTGGTGATGGATGGCGTCGCCACTAGTGGGTCTTCTGGTTCTTCTTCTGCTGGTGCTAAAAGGCCTAA
AGTCTTGATTCCCTCACAGACTACCGCCGCCGCCGCCGCCGCTTCCACTTCCAACGCCACCACTCCCCGGAGCTTCGAAACAACCTCTAGTCATCAAGATGCAAGCTTCA
AGAAGTCGTTACCGGGGCAAGTTCAGGCTCCAGCCGTGTTCAAATGCCATAGAGTGACAGCCATTAGCAGTGGTGAAGGTGAGTTAACTTACCAAGCAACAGTCAACATT
GGTGGCCATGTCTTCAAAGGATTTCTTTATGATCAAGGAGCTGATGTTAAAAATGCACTCCCATCTATTTCACACCTCCATTTGGAAAGTGGTAATCACCTCAGGGATTA
G
mRNA sequenceShow/hide mRNA sequence
ATGGATATATCCCTTTGTTGTTTCCATCTCATTTTGATATCTGGGCTCTTAGAAGCTGAAAGATTTTGGGTACCTCTAAGACGAGGTGTGGCTGAAGAGAGTGAGAATAG
GAAGAAGAAAGAAGCATGGTGGAGAAGTAGGGTTAGATTAACCCTCTTTCATTCTCAATCTCAATTTCCAGACCTTTCTTTCTCCTTTTGTGTTAATACAACAATGTTGG
GTCTCCGTGATGTTCTATTTATAGCACCGACGCCTTCTTCTCTTCACCAACATACCCAAATCATTTCTTCTGATCATCACCCATCTCTTCCTCTGCCCTCCTCCACCGCT
CTTGGCGTCAGCGTCGGTATTTTCCCCCTTCTTGCTGCAACCCCATGTCTCCAGCCGCCGCCTAATCAGATGCCTGATGAACTGAGTGATCGTAGTCGGAGTTTGGAGAA
TCTAAAGAGAACCCAGGATTTTGGGTTTGGAAAAGGGGATTCGTTGATCGGCGGTGGCGGAAATCATGGCTACGACGACCAAGTGAAAGGCGATGGTGGCGATGGTTCTC
TGGGTGTGTGTAGAGACTGTGGAAACAGAGCAAAGAAGGAGTGCGAGTATCGGAGGTGTAGGACTTGTTGTAAAGGACGTGGGAATCATTGCTCTACGCACGTGAAGAGC
ACGTGGGTGCCGGCATCGCGCCGCCGTGAGCGGCAGATGTTGGTGGTGATGGATGGCGTCGCCACTAGTGGGTCTTCTGGTTCTTCTTCTGCTGGTGCTAAAAGGCCTAA
AGTCTTGATTCCCTCACAGACTACCGCCGCCGCCGCCGCCGCTTCCACTTCCAACGCCACCACTCCCCGGAGCTTCGAAACAACCTCTAGTCATCAAGATGCAAGCTTCA
AGAAGTCGTTACCGGGGCAAGTTCAGGCTCCAGCCGTGTTCAAATGCCATAGAGTGACAGCCATTAGCAGTGGTGAAGGTGAGTTAACTTACCAAGCAACAGTCAACATT
GGTGGCCATGTCTTCAAAGGATTTCTTTATGATCAAGGAGCTGATGTTAAAAATGCACTCCCATCTATTTCACACCTCCATTTGGAAAGTGGTAATCACCTCAGGGATTA
GACATTCCTGCTCTCTTTTCTATCACTCTCCTCTTCCTCCCTGCTGAGGATCACCTGAAAACTCGTTCTCGGCCACCCGAAAAATATCACATCTCTACTAGATTTCAGTG
ATCTGCTATGTTATCTATAAGTTCTATATAGTTTTCATGATGAAATGCAATGAATCTGCACTAAATAGAACACCAAAGTGCATAGTTGTAATAGGATCTTCTGTTCTATA
GTTTTTGTAGCCTTAAGCTAGGCTTAGTGTAAGATTTCTCAAGTCCAATCTTAGTTGGATACTGATCTTCTGTATATTACTGCTAAGAAGATGTGTAACTTTCATCTACC
TTGTCCTATCTCTTCTTTGATTGTCTATCTCGAAAAGTTTTACGAAACAAATGAAATCATTGATCTCCAATCAATAGAACATCGAGCATCTTCTTGCGAAATGCTGCGAT
GGTGGGACAGAGATCTTCAACTTTGAAGATTTTCACTGATTTGGAACTTCACCAATTATGGAAGGGCTTCATTACATGTAAGTCATTAATTTGATCGAGATGACCTCAAT
GGTGATGTTTAGCGAGAACCCGGATAAGTAAAGTCGGACCCCACACGATGGACATAAGCAGAAGATGAAAGTAAGTGTGAACTCCAGTTCCAAATCCATTGCTTTCTTAT
TTCGAGTTAGATGAAGACTAAAAACTGAAAGGTGGGAAGAAGAGTAAAGCAGTGAAGAATTACCAAAACTTGAAAACAATTAAAAGAGAAGCGTTGATGGAGAGAAAAGG
ATGAATGAATGAATGAATGAATGAATGAAAACAGTGTATCATTAACAAGAAGCTATGCATTAAAAGACATGAACAAGATCAATAGGCTCACAAGAAGATGTTCGAGTCTT
TTCATGTAGGACTTGTTGGCCC
Protein sequenceShow/hide protein sequence
MDISLCCFHLILISGLLEAERFWVPLRRGVAEESENRKKKEAWWRSRVRLTLFHSQSQFPDLSFSFCVNTTMLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTA
LGVSVGIFPLLAATPCLQPPPNQMPDELSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGYDDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKS
TWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGQVQAPAVFKCHRVTAISSGEGELTYQATVNI
GGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD