CuGenDBv2

Gene ID	CmoCh04G014060
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	F-box protein At3g54460-like isoform X1
Genome location	Cmo_Chr04:7175762..7178283
RNA-Seq Expression	CmoCh04G014060
Synteny	CmoCh04G014060
Gene Ontology terms	GO:0005524 - ATP binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6601131.1 F-box protein, partial [Cucurbita argyrosperma subsp. sororia]

1.7e-95

97.3

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Query:  MDDDDFSDYKLCGFLCVVLAVPSRQSELVNALCPGTRCYVSVESSDVCFTSEYGVVLTPIEANPKPLSKAGVSPQDSEQCGGTVGGEGTSTVENGDLTLK
        MDDDDFSDYKLCGFLCVVLAVPSRQSEL NAL PGTRCYVSVESSDVCFTSEYGVVLTPIEANPKPLSKAGVSPQDSEQC GTVGGEGTSTVENGDLTLK
Subjt:  MDDDDFSDYKLCGFLCVVLAVPSRQSELVNALCPGTRCYVSVESSDVCFTSEYGVVLTPIEANPKPLSKAGVSPQDSEQCGGTVGGEGTSTVENGDLTLK

Query:  LKMSARGRRTSGKKRTNRMGLVHGSMSVVHQIHALVVHKCLKIDAQVIFVDIGVDEEARAVLLVDVHLPVELWSGWQFPRSKTVA
         KMSARGRRTSGKKRTNRMGLVHGSMSVVHQIHALVVHKCL+IDAQVIFVDIGVDEEARAVLLVDVHLPVELWSGWQFPRSKTVA
Subjt:  LKMSARGRRTSGKKRTNRMGLVHGSMSVVHQIHALVVHKCLKIDAQVIFVDIGVDEEARAVLLVDVHLPVELWSGWQFPRSKTVA

KAG7031930.1 F-box protein [Cucurbita argyrosperma subsp. argyrosperma]

1.1e-94

96.76

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Query:  MDDDDFSDYKLCGFLCVVLAVPSRQSELVNALCPGTRCYVSVESSDVCFTSEYGVVLTPIEANPKPLSKAGVSPQDSEQCGGTVGGEGTSTVENGDLTLK
        M DDDFSDYKLCGFLCVVLAVPSRQSEL NAL PGTRCYVSVESSDVCFTSEYGVVLTPIEANPKPLSKAGVSPQDSEQC GTVGGEGTSTVENGDLTLK
Subjt:  MDDDDFSDYKLCGFLCVVLAVPSRQSELVNALCPGTRCYVSVESSDVCFTSEYGVVLTPIEANPKPLSKAGVSPQDSEQCGGTVGGEGTSTVENGDLTLK

Query:  LKMSARGRRTSGKKRTNRMGLVHGSMSVVHQIHALVVHKCLKIDAQVIFVDIGVDEEARAVLLVDVHLPVELWSGWQFPRSKTVA
         KMSARGRRTSGKKRTNRMGLVHGSMSVVHQIHALVVHKCL+IDAQVIFVDIGVDEEARAVLLVDVHLPVELWSGWQFPRSKTVA
Subjt:  LKMSARGRRTSGKKRTNRMGLVHGSMSVVHQIHALVVHKCLKIDAQVIFVDIGVDEEARAVLLVDVHLPVELWSGWQFPRSKTVA

XP_022956679.1 F-box protein At3g54460 isoform X1 [Cucurbita moschata]

2.5e-99

100

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Query:  MDDDDFSDYKLCGFLCVVLAVPSRQSELVNALCPGTRCYVSVESSDVCFTSEYGVVLTPIEANPKPLSKAGVSPQDSEQCGGTVGGEGTSTVENGDLTLK
        MDDDDFSDYKLCGFLCVVLAVPSRQSELVNALCPGTRCYVSVESSDVCFTSEYGVVLTPIEANPKPLSKAGVSPQDSEQCGGTVGGEGTSTVENGDLTLK
Subjt:  MDDDDFSDYKLCGFLCVVLAVPSRQSELVNALCPGTRCYVSVESSDVCFTSEYGVVLTPIEANPKPLSKAGVSPQDSEQCGGTVGGEGTSTVENGDLTLK

Query:  LKMSARGRRTSGKKRTNRMGLVHGSMSVVHQIHALVVHKCLKIDAQVIFVDIGVDEEARAVLLVDVHLPVELWSGWQFPRSKTVA
        LKMSARGRRTSGKKRTNRMGLVHGSMSVVHQIHALVVHKCLKIDAQVIFVDIGVDEEARAVLLVDVHLPVELWSGWQFPRSKTVA
Subjt:  LKMSARGRRTSGKKRTNRMGLVHGSMSVVHQIHALVVHKCLKIDAQVIFVDIGVDEEARAVLLVDVHLPVELWSGWQFPRSKTVA

XP_022956685.1 F-box protein At3g54460 isoform X2 [Cucurbita moschata]

2.5e-99

100

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Query:  MDDDDFSDYKLCGFLCVVLAVPSRQSELVNALCPGTRCYVSVESSDVCFTSEYGVVLTPIEANPKPLSKAGVSPQDSEQCGGTVGGEGTSTVENGDLTLK
        MDDDDFSDYKLCGFLCVVLAVPSRQSELVNALCPGTRCYVSVESSDVCFTSEYGVVLTPIEANPKPLSKAGVSPQDSEQCGGTVGGEGTSTVENGDLTLK
Subjt:  MDDDDFSDYKLCGFLCVVLAVPSRQSELVNALCPGTRCYVSVESSDVCFTSEYGVVLTPIEANPKPLSKAGVSPQDSEQCGGTVGGEGTSTVENGDLTLK

Query:  LKMSARGRRTSGKKRTNRMGLVHGSMSVVHQIHALVVHKCLKIDAQVIFVDIGVDEEARAVLLVDVHLPVELWSGWQFPRSKTVA
        LKMSARGRRTSGKKRTNRMGLVHGSMSVVHQIHALVVHKCLKIDAQVIFVDIGVDEEARAVLLVDVHLPVELWSGWQFPRSKTVA
Subjt:  LKMSARGRRTSGKKRTNRMGLVHGSMSVVHQIHALVVHKCLKIDAQVIFVDIGVDEEARAVLLVDVHLPVELWSGWQFPRSKTVA

XP_023003900.1 LOW QUALITY PROTEIN: F-box protein At3g54460-like [Cucurbita maxima]

3.1e-94

96.76

Show/hide

Query:  MDDDDFSDYKLCGFLCVVLAVPSRQSELVNALCPGTRCYVSVESSDVCFTSEYGVVLTPIEANPKPLSKAGVSPQDSEQCGGTVGGEGTSTVENGDLTLK
        MDDDDFSDYKLCGFLCVVLAVPS QSELVNAL PGTRCYVSVE SDVCFTSEYGVVLTPIEANPKPLSKAGVSPQDSEQC G VGGEGTSTVENGDLTLK
Subjt:  MDDDDFSDYKLCGFLCVVLAVPSRQSELVNALCPGTRCYVSVESSDVCFTSEYGVVLTPIEANPKPLSKAGVSPQDSEQCGGTVGGEGTSTVENGDLTLK

Query:  LKMSARGRRTSGKKRTNRMGLVHGSMSVVHQIHALVVHKCLKIDAQVIFVDIGVDEEARAVLLVDVHLPVELWSGWQFPRSKTVA
         KMSARGRRTSGKKRTNRMGLVHGSMSVVHQIHALVVHKCLKIDAQVIFVDIGVDEEARAVLLVDVHLPVELWSGWQFPRSKTVA
Subjt:  LKMSARGRRTSGKKRTNRMGLVHGSMSVVHQIHALVVHKCLKIDAQVIFVDIGVDEEARAVLLVDVHLPVELWSGWQFPRSKTVA

TrEMBL top hits

e value

%identity

Alignment

A0A6J1G0F2 F-box protein At3g54460-like isoform X3

5.3e-79

82.7

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Query:  MDDDDFSDYKLCGFLCVVLAVPSRQSELVNALCPGTRCYVSVESSDVCFTSEYGVVLTPIEANPKPLSKAGVSPQDSEQCGGTVGGEGTSTVENGDLTLK
        MDD DFSDYKLCGFLCVVLAVPS  SEL NAL PGTRCYVS ESSDV FTSE GVVL+PIE NPKPLSK GVS QDSEQCGGTVGG+GT ++E GD T K
Subjt:  MDDDDFSDYKLCGFLCVVLAVPSRQSELVNALCPGTRCYVSVESSDVCFTSEYGVVLTPIEANPKPLSKAGVSPQDSEQCGGTVGGEGTSTVENGDLTLK

Query:  LKMSARGRRTSGKKRTNRMGLVHGSMSVVHQIHALVVHKCLKIDAQVIFVDIGVDEEARAVLLVDVHLPVELWSGWQFPRSKTVA
         ++S RG R+S KKRTNRMG+V+GSMS VHQIHALVVHKCLKIDAQVIFVDIGV EEAR VLLVDVHLP+ELWSGWQFPRSKTVA
Subjt:  LKMSARGRRTSGKKRTNRMGLVHGSMSVVHQIHALVVHKCLKIDAQVIFVDIGVDEEARAVLLVDVHLPVELWSGWQFPRSKTVA

A0A6J1G0J1 F-box protein At3g54460-like isoform X1

5.3e-79

82.7

Show/hide

Query:  MDDDDFSDYKLCGFLCVVLAVPSRQSELVNALCPGTRCYVSVESSDVCFTSEYGVVLTPIEANPKPLSKAGVSPQDSEQCGGTVGGEGTSTVENGDLTLK
        MDD DFSDYKLCGFLCVVLAVPS  SEL NAL PGTRCYVS ESSDV FTSE GVVL+PIE NPKPLSK GVS QDSEQCGGTVGG+GT ++E GD T K
Subjt:  MDDDDFSDYKLCGFLCVVLAVPSRQSELVNALCPGTRCYVSVESSDVCFTSEYGVVLTPIEANPKPLSKAGVSPQDSEQCGGTVGGEGTSTVENGDLTLK

Query:  LKMSARGRRTSGKKRTNRMGLVHGSMSVVHQIHALVVHKCLKIDAQVIFVDIGVDEEARAVLLVDVHLPVELWSGWQFPRSKTVA
         ++S RG R+S KKRTNRMG+V+GSMS VHQIHALVVHKCLKIDAQVIFVDIGV EEAR VLLVDVHLP+ELWSGWQFPRSKTVA
Subjt:  LKMSARGRRTSGKKRTNRMGLVHGSMSVVHQIHALVVHKCLKIDAQVIFVDIGVDEEARAVLLVDVHLPVELWSGWQFPRSKTVA

A0A6J1GYG3 F-box protein At3g54460 isoform X2

1.2e-99

100

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Query:  MDDDDFSDYKLCGFLCVVLAVPSRQSELVNALCPGTRCYVSVESSDVCFTSEYGVVLTPIEANPKPLSKAGVSPQDSEQCGGTVGGEGTSTVENGDLTLK
        MDDDDFSDYKLCGFLCVVLAVPSRQSELVNALCPGTRCYVSVESSDVCFTSEYGVVLTPIEANPKPLSKAGVSPQDSEQCGGTVGGEGTSTVENGDLTLK
Subjt:  MDDDDFSDYKLCGFLCVVLAVPSRQSELVNALCPGTRCYVSVESSDVCFTSEYGVVLTPIEANPKPLSKAGVSPQDSEQCGGTVGGEGTSTVENGDLTLK

Query:  LKMSARGRRTSGKKRTNRMGLVHGSMSVVHQIHALVVHKCLKIDAQVIFVDIGVDEEARAVLLVDVHLPVELWSGWQFPRSKTVA
        LKMSARGRRTSGKKRTNRMGLVHGSMSVVHQIHALVVHKCLKIDAQVIFVDIGVDEEARAVLLVDVHLPVELWSGWQFPRSKTVA
Subjt:  LKMSARGRRTSGKKRTNRMGLVHGSMSVVHQIHALVVHKCLKIDAQVIFVDIGVDEEARAVLLVDVHLPVELWSGWQFPRSKTVA

A0A6J1GZS0 F-box protein At3g54460 isoform X1

1.2e-99

100

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Query:  MDDDDFSDYKLCGFLCVVLAVPSRQSELVNALCPGTRCYVSVESSDVCFTSEYGVVLTPIEANPKPLSKAGVSPQDSEQCGGTVGGEGTSTVENGDLTLK
        MDDDDFSDYKLCGFLCVVLAVPSRQSELVNALCPGTRCYVSVESSDVCFTSEYGVVLTPIEANPKPLSKAGVSPQDSEQCGGTVGGEGTSTVENGDLTLK
Subjt:  MDDDDFSDYKLCGFLCVVLAVPSRQSELVNALCPGTRCYVSVESSDVCFTSEYGVVLTPIEANPKPLSKAGVSPQDSEQCGGTVGGEGTSTVENGDLTLK

Query:  LKMSARGRRTSGKKRTNRMGLVHGSMSVVHQIHALVVHKCLKIDAQVIFVDIGVDEEARAVLLVDVHLPVELWSGWQFPRSKTVA
        LKMSARGRRTSGKKRTNRMGLVHGSMSVVHQIHALVVHKCLKIDAQVIFVDIGVDEEARAVLLVDVHLPVELWSGWQFPRSKTVA
Subjt:  LKMSARGRRTSGKKRTNRMGLVHGSMSVVHQIHALVVHKCLKIDAQVIFVDIGVDEEARAVLLVDVHLPVELWSGWQFPRSKTVA

A0A6J1KT32 LOW QUALITY PROTEIN: F-box protein At3g54460-like

1.5e-94

96.76

Show/hide

Query:  MDDDDFSDYKLCGFLCVVLAVPSRQSELVNALCPGTRCYVSVESSDVCFTSEYGVVLTPIEANPKPLSKAGVSPQDSEQCGGTVGGEGTSTVENGDLTLK
        MDDDDFSDYKLCGFLCVVLAVPS QSELVNAL PGTRCYVSVE SDVCFTSEYGVVLTPIEANPKPLSKAGVSPQDSEQC G VGGEGTSTVENGDLTLK
Subjt:  MDDDDFSDYKLCGFLCVVLAVPSRQSELVNALCPGTRCYVSVESSDVCFTSEYGVVLTPIEANPKPLSKAGVSPQDSEQCGGTVGGEGTSTVENGDLTLK

Query:  LKMSARGRRTSGKKRTNRMGLVHGSMSVVHQIHALVVHKCLKIDAQVIFVDIGVDEEARAVLLVDVHLPVELWSGWQFPRSKTVA
         KMSARGRRTSGKKRTNRMGLVHGSMSVVHQIHALVVHKCLKIDAQVIFVDIGVDEEARAVLLVDVHLPVELWSGWQFPRSKTVA
Subjt:  LKMSARGRRTSGKKRTNRMGLVHGSMSVVHQIHALVVHKCLKIDAQVIFVDIGVDEEARAVLLVDVHLPVELWSGWQFPRSKTVA

SwissProt top hits

e value

%identity

Alignment

Q9M1I1 F-box protein At3g54460

3.4e-27

38.78

Show/hide

Query:  DYKLCGFLCVVLAVPSRQSELVNALCPGTRCYVSVESSDVCFTSEYGVVLT---PIEANPKPLSKAG---------------VSPQDSEQCGGTVGGEGT
        D+KLCGFLC VL+V S      + L  G+ C++  + S   F SE G++L+   PI      +S  G                +PQ   +C   V GE +
Subjt:  DYKLCGFLCVVLAVPSRQSELVNALCPGTRCYVSVESSDVCFTSEYGVVLT---PIEANPKPLSKAG---------------VSPQDSEQCGGTVGGEGT

Query:  STVENGDLTLKLKMSARGRRTSGKKRTNRMGLVHGSMSVVHQIHALVVHKCLKIDAQVIFVDIGVDEEARAVLLVDVHLPVELWSGWQFPRSKTVA
           +      ++   ++ +   G+KR   +G+V+GS+SVV Q+HALV +KCLKI  +V+ VD G + E RAV+LVDV+LP+ELWSGWQFP+S+  A
Subjt:  STVENGDLTLKLKMSARGRRTSGKKRTNRMGLVHGSMSVVHQIHALVVHKCLKIDAQVIFVDIGVDEEARAVLLVDVHLPVELWSGWQFPRSKTVA

Arabidopsis top hits

e value

%identity

Alignment

AT3G54460.1 SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein

2.4e-28

38.78

Show/hide

Query:  DYKLCGFLCVVLAVPSRQSELVNALCPGTRCYVSVESSDVCFTSEYGVVLT---PIEANPKPLSKAG---------------VSPQDSEQCGGTVGGEGT
        D+KLCGFLC VL+V S      + L  G+ C++  + S   F SE G++L+   PI      +S  G                +PQ   +C   V GE +
Subjt:  DYKLCGFLCVVLAVPSRQSELVNALCPGTRCYVSVESSDVCFTSEYGVVLT---PIEANPKPLSKAG---------------VSPQDSEQCGGTVGGEGT

Query:  STVENGDLTLKLKMSARGRRTSGKKRTNRMGLVHGSMSVVHQIHALVVHKCLKIDAQVIFVDIGVDEEARAVLLVDVHLPVELWSGWQFPRSKTVA
           +      ++   ++ +   G+KR   +G+V+GS+SVV Q+HALV +KCLKI  +V+ VD G + E RAV+LVDV+LP+ELWSGWQFP+S+  A
Subjt:  STVENGDLTLKLKMSARGRRTSGKKRTNRMGLVHGSMSVVHQIHALVVHKCLKIDAQVIFVDIGVDEEARAVLLVDVHLPVELWSGWQFPRSKTVA

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGACGATGACGACTTCTCTGACTACAAGCTCTGCGGTTTCTTGTGTGTGGTTCTTGCCGTTCCTTCGCGGCAGTCCGAACTGGTGAATGCTCTATGTCCAGGTACGCG
TTGTTATGTCTCTGTTGAGAGTTCTGATGTTTGTTTTACTTCCGAATATGGCGTCGTGCTTACTCCGATTGAAGCAAACCCCAAACCGCTCTCCAAGGCCGGTGTTTCGC
CTCAAGATTCTGAGCAATGTGGGGGGACGGTAGGTGGAGAGGGAACTAGTACGGTGGAGAATGGTGATTTAACTCTGAAGCTCAAGATGTCTGCGAGAGGACGTAGGACC
TCGGGGAAAAAGAGGACGAATAGGATGGGGCTGGTTCATGGCAGCATGAGCGTTGTGCATCAAATTCACGCTCTGGTAGTGCACAAGTGCTTGAAGATTGACGCGCAGGT
GATTTTCGTTGACATTGGCGTTGATGAGGAGGCCCGAGCTGTGTTGTTGGTTGATGTTCATCTTCCCGTTGAATTGTGGTCCGGTTGGCAGTTTCCTAGATCCAAGACGG
TTGCTGTTGTGAATGGCAAGAAAGAAGCTCTCTACTTGTTGGAAAAGATCATTCTCAAGTTGCAGATATGGTTAGGAAGAGCGTGTGGAATCCCGCAGAATGTCATGTCC
ACAATTGCAAATTGCACAATAGTCCTGGAGGTTCTTCAAATAGAAGGCTCTTTGAACTTCATGAAATATTTAGAAGCTTACCGAGTATTCTTAGGTCATGCAAACCTGAA
TATACGAGAATACAACCAGAGGATGATTATTCTCAATCAGGCATATGGGACATATCAGATGACGTTCTGA

mRNA sequence

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Protein sequence

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MDDDDFSDYKLCGFLCVVLAVPSRQSELVNALCPGTRCYVSVESSDVCFTSEYGVVLTPIEANPKPLSKAGVSPQDSEQCGGTVGGEGTSTVENGDLTLKLKMSARGRRT
SGKKRTNRMGLVHGSMSVVHQIHALVVHKCLKIDAQVIFVDIGVDEEARAVLLVDVHLPVELWSGWQFPRSKTVAVVNGKKEALYLLEKIILKLQIWLGRACGIPQNVMS
TIANCTIVLEVLQIEGSLNFMKYLEAYRVFLGHANLNIREYNQRMIILNQAYGTYQMTF

CmoCh04G014060 (gene) of Cucurbita moschata (Rifu) v1 genome