; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh04G014710 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G014710
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionprotein BTR1-like
Genome locationCmo_Chr04:7521673..7529170
RNA-Seq ExpressionCmoCh04G014710
SyntenyCmoCh04G014710
Gene Ontology termsGO:0010468 - regulation of gene expression (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR004087 - K Homology domain
IPR004088 - K Homology domain, type 1
IPR036612 - K Homology domain, type 1 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601194.1 Protein BTR1, partial [Cucurbita argyrosperma subsp. sororia]3.8e-14389.03Show/hide
Query:  MESTESSYVSSPEAPTKRSPPLPKSPNSDNMEKATYIRFL-----------------------------LSRNHEFFPGTTDRIIMVSGTINEILKAMEL
        MESTESSYVSSPEAPTKRSPP PKSPNSDNMEKATYIRFL                             LSRNHEFFPGTTDRIIMVSGTINEILKAMEL
Subjt:  MESTESSYVSSPEAPTKRSPPLPKSPNSDNMEKATYIRFL-----------------------------LSRNHEFFPGTTDRIIMVSGTINEILKAMEL

Query:  VLAKLLSELHAEEVDDAEPRTKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQS
        VLAKLLSELHAEEVDDAEPRTKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQS
Subjt:  VLAKLLSELHAEEVDDAEPRTKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQS

Query:  MNYPFSYPTSY----NAMNSGSNGGTGGRFQNNKEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRA
        MNYPFSYPTSY    NAMNSGSNGGTGGRF NNKEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRA
Subjt:  MNYPFSYPTSY----NAMNSGSNGGTGGRFQNNKEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRA

Query:  AESMILQKVAYASERVLAQ
        AESMILQKVAYASERVLAQ
Subjt:  AESMILQKVAYASERVLAQ

XP_008446807.1 PREDICTED: protein BTR1 [Cucumis melo]3.5e-14187.94Show/hide
Query:  MESTESSYVSSPEAPTKRSPPLPKSPNSDNMEKATYIRFL-----------------------------LSRNHEFFPGTTDRIIMVSGTINEILKAMEL
        MESTESSYVSSPEAP KRSPP PKSPNSDNM+KATYIRFL                             LSRNHEFFPGTTDRIIMVSG+INEILKAMEL
Subjt:  MESTESSYVSSPEAPTKRSPPLPKSPNSDNMEKATYIRFL-----------------------------LSRNHEFFPGTTDRIIMVSGTINEILKAMEL

Query:  VLAKLLSELHAEEVDDAEPRTKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQS
        VLAKLLSELHAEE DD EPRTKVRLIVPHSSCGAIIGKGGSTIK+FIEDSQAGIKISPQDNNYM STDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQS
Subjt:  VLAKLLSELHAEEVDDAEPRTKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQS

Query:  MNYPFSYPTSYNAMNSGSNGGTGGRFQNNKEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRAAESM
        MNYPFSYPTSYNAMN GSNGGTGGRFQNNKEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRAAESM
Subjt:  MNYPFSYPTSYNAMNSGSNGGTGGRFQNNKEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRAAESM

Query:  ILQKVAYASERVLAQ
        ILQKVAYASERVLAQ
Subjt:  ILQKVAYASERVLAQ

XP_011655857.1 protein BTR1 isoform X2 [Cucumis sativus]1.1e-13987.66Show/hide
Query:  MESTESSYVSSPEAPTKRSPPLPKSPNSDNMEKATYIRFL-----------------------------LSRNHEFFPGTTDRIIMVSGTINEILKAMEL
        MESTESSYVSSPEAP KRSPP PKSPNSDNMEKATYIRFL                             LSRNHEFFPGTTDRIIMVSG+INEILKAMEL
Subjt:  MESTESSYVSSPEAPTKRSPPLPKSPNSDNMEKATYIRFL-----------------------------LSRNHEFFPGTTDRIIMVSGTINEILKAMEL

Query:  VLAKLLSELHAEEVDDAEPRTKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQS
        VLAKLLSELHAEE DD EPRTKVRLIVPHSSCGAIIGKGGSTIK+FIEDSQAGIKISPQDNNYM STDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQS
Subjt:  VLAKLLSELHAEEVDDAEPRTKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQS

Query:  MNYPFSYPTSYNAMNSGSN-GGTGGRFQNNKEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRAAES
        MNYPFSYPTS+NAMN GSN GGTGGRFQNNKEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRAAES
Subjt:  MNYPFSYPTSYNAMNSGSN-GGTGGRFQNNKEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRAAES

Query:  MILQKVAYASERVLAQ
        MILQKVAYASERVLAQ
Subjt:  MILQKVAYASERVLAQ

XP_022994607.1 protein BTR1-like [Cucurbita maxima]5.8e-14489.34Show/hide
Query:  MESTESSYVSSPEAPTKRSPPLPKSPNSDNMEKATYIRFL-----------------------------LSRNHEFFPGTTDRIIMVSGTINEILKAMEL
        MESTESSYVSSPEAPTKRSPP PKSPNSDNMEKATYIRFL                             LSRNHEFFPGTTDRIIMVSGTINEILKAMEL
Subjt:  MESTESSYVSSPEAPTKRSPPLPKSPNSDNMEKATYIRFL-----------------------------LSRNHEFFPGTTDRIIMVSGTINEILKAMEL

Query:  VLAKLLSELHAEEVDDAEPRTKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQS
        VLAKLLSELHAEEVDDAEPRTKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQS
Subjt:  VLAKLLSELHAEEVDDAEPRTKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQS

Query:  MNYPFSYPTSY----NAMNSGSNGGTGGRFQNNKEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRA
        MNYPFSYPTSY    NAMNSGSNGGTGGRFQNNKEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRA
Subjt:  MNYPFSYPTSY----NAMNSGSNGGTGGRFQNNKEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRA

Query:  AESMILQKVAYASERVLAQ
        AESMILQKVAYASERVLAQ
Subjt:  AESMILQKVAYASERVLAQ

XP_038893255.1 protein BTR1 [Benincasa hispida]3.2e-14288.57Show/hide
Query:  MESTESSYVSSPEAPTKRSPPLPKSPNSDNMEKATYIRFL-----------------------------LSRNHEFFPGTTDRIIMVSGTINEILKAMEL
        MESTESSYVSSPEAP KRSPP PKSPNSDNMEKATYIRFL                             LSRNHEFFPGTTDRIIMVSG+INEILKAMEL
Subjt:  MESTESSYVSSPEAPTKRSPPLPKSPNSDNMEKATYIRFL-----------------------------LSRNHEFFPGTTDRIIMVSGTINEILKAMEL

Query:  VLAKLLSELHAEEVDDAEPRTKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQS
        VLAKLLSELHAEE DD EPRTKVRLIVPHSSCGAIIGKGGSTIK+FIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQS
Subjt:  VLAKLLSELHAEEVDDAEPRTKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQS

Query:  MNYPFSYPTSYNAMNSGSNGGTGGRFQNNKEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRAAESM
        MNYPFSYPTSYNAMN GSNGGTGGRFQNNKEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRAAESM
Subjt:  MNYPFSYPTSYNAMNSGSNGGTGGRFQNNKEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRAAESM

Query:  ILQKVAYASERVLAQ
        ILQKVAYASERVLAQ
Subjt:  ILQKVAYASERVLAQ

TrEMBL top hitse value%identityAlignment
A0A0A0KWP6 Uncharacterized protein5.5e-14087.66Show/hide
Query:  MESTESSYVSSPEAPTKRSPPLPKSPNSDNMEKATYIRFL-----------------------------LSRNHEFFPGTTDRIIMVSGTINEILKAMEL
        MESTESSYVSSPEAP KRSPP PKSPNSDNMEKATYIRFL                             LSRNHEFFPGTTDRIIMVSG+INEILKAMEL
Subjt:  MESTESSYVSSPEAPTKRSPPLPKSPNSDNMEKATYIRFL-----------------------------LSRNHEFFPGTTDRIIMVSGTINEILKAMEL

Query:  VLAKLLSELHAEEVDDAEPRTKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQS
        VLAKLLSELHAEE DD EPRTKVRLIVPHSSCGAIIGKGGSTIK+FIEDSQAGIKISPQDNNYM STDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQS
Subjt:  VLAKLLSELHAEEVDDAEPRTKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQS

Query:  MNYPFSYPTSYNAMNSGSN-GGTGGRFQNNKEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRAAES
        MNYPFSYPTS+NAMN GSN GGTGGRFQNNKEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRAAES
Subjt:  MNYPFSYPTSYNAMNSGSN-GGTGGRFQNNKEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRAAES

Query:  MILQKVAYASERVLAQ
        MILQKVAYASERVLAQ
Subjt:  MILQKVAYASERVLAQ

A0A1S3BFZ8 protein BTR11.7e-14187.94Show/hide
Query:  MESTESSYVSSPEAPTKRSPPLPKSPNSDNMEKATYIRFL-----------------------------LSRNHEFFPGTTDRIIMVSGTINEILKAMEL
        MESTESSYVSSPEAP KRSPP PKSPNSDNM+KATYIRFL                             LSRNHEFFPGTTDRIIMVSG+INEILKAMEL
Subjt:  MESTESSYVSSPEAPTKRSPPLPKSPNSDNMEKATYIRFL-----------------------------LSRNHEFFPGTTDRIIMVSGTINEILKAMEL

Query:  VLAKLLSELHAEEVDDAEPRTKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQS
        VLAKLLSELHAEE DD EPRTKVRLIVPHSSCGAIIGKGGSTIK+FIEDSQAGIKISPQDNNYM STDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQS
Subjt:  VLAKLLSELHAEEVDDAEPRTKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQS

Query:  MNYPFSYPTSYNAMNSGSNGGTGGRFQNNKEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRAAESM
        MNYPFSYPTSYNAMN GSNGGTGGRFQNNKEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRAAESM
Subjt:  MNYPFSYPTSYNAMNSGSNGGTGGRFQNNKEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRAAESM

Query:  ILQKVAYASERVLAQ
        ILQKVAYASERVLAQ
Subjt:  ILQKVAYASERVLAQ

A0A6J1CC53 protein BTR17.1e-14086.67Show/hide
Query:  MESTESSYVSSPEAPTKRSPPLPKSPNSDNMEKATYIRFL-----------------------------LSRNHEFFPGTTDRIIMVSGTINEILKAMEL
        MESTESSYVSSPEAP KRSPP PKSPNSDNM+KATYIRFL                             LSRNHEFFPGTTDRIIMVSG+INEILKAMEL
Subjt:  MESTESSYVSSPEAPTKRSPPLPKSPNSDNMEKATYIRFL-----------------------------LSRNHEFFPGTTDRIIMVSGTINEILKAMEL

Query:  VLAKLLSELHAEEVDDAEPRTKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQS
        VLAKLLSELHAEE DD EPRTKVRLIVPHSSCGAIIGKGGSTIK+FIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQS
Subjt:  VLAKLLSELHAEEVDDAEPRTKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQS

Query:  MNYPFSYPTSYNAMNSGSNGGTGGRFQNNKEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRAAESM
        MNYPFSYPTSYN MN GSNGG GGRFQNNKEER+NSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIR AESM
Subjt:  MNYPFSYPTSYNAMNSGSNGGTGGRFQNNKEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRAAESM

Query:  ILQKVAYASERVLAQ
        I+QKVAYASERVLAQ
Subjt:  ILQKVAYASERVLAQ

A0A6J1HU77 protein BTR1-like1.4e-13582.12Show/hide
Query:  MESTESSYVSSPEAPTKRSPPLPKSPNSDNMEKATYIRFL-----------------------------LSRNHEFFPGTTDRIIMVSGTINEILKAMEL
        MESTESSYVSSPEAP KRSPP PKSPNSDNMEK TYIRFL                             LSRNHEFFPGTTDRIIMVSGTINEILKAM+L
Subjt:  MESTESSYVSSPEAPTKRSPPLPKSPNSDNMEKATYIRFL-----------------------------LSRNHEFFPGTTDRIIMVSGTINEILKAMEL

Query:  VLAKLLSELHAEEVDDAEPRTKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQS
        VLAKLLSELHAEE DD EPRTKVRLIVPHSSCGAIIGKGGSTIK+FIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQS
Subjt:  VLAKLLSELHAEEVDDAEPRTKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQS

Query:  MNYPFSYPTSYNAMNSGSNGGTGGRFQNNK---------------EERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKV
        MNYPFSYPTSYNA+N  SNGG GGRF NNK               EER+NSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKV
Subjt:  MNYPFSYPTSYNAMNSGSNGGTGGRFQNNK---------------EERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKV

Query:  TITGSQRAIRAAESMILQKVAYASERVLAQ
        TITGSQRAIR+AESMI+QKVAYASERVLAQ
Subjt:  TITGSQRAIRAAESMILQKVAYASERVLAQ

A0A6J1JWC0 protein BTR1-like2.8e-14489.34Show/hide
Query:  MESTESSYVSSPEAPTKRSPPLPKSPNSDNMEKATYIRFL-----------------------------LSRNHEFFPGTTDRIIMVSGTINEILKAMEL
        MESTESSYVSSPEAPTKRSPP PKSPNSDNMEKATYIRFL                             LSRNHEFFPGTTDRIIMVSGTINEILKAMEL
Subjt:  MESTESSYVSSPEAPTKRSPPLPKSPNSDNMEKATYIRFL-----------------------------LSRNHEFFPGTTDRIIMVSGTINEILKAMEL

Query:  VLAKLLSELHAEEVDDAEPRTKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQS
        VLAKLLSELHAEEVDDAEPRTKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQS
Subjt:  VLAKLLSELHAEEVDDAEPRTKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQS

Query:  MNYPFSYPTSY----NAMNSGSNGGTGGRFQNNKEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRA
        MNYPFSYPTSY    NAMNSGSNGGTGGRFQNNKEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRA
Subjt:  MNYPFSYPTSY----NAMNSGSNGGTGGRFQNNKEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRA

Query:  AESMILQKVAYASERVLAQ
        AESMILQKVAYASERVLAQ
Subjt:  AESMILQKVAYASERVLAQ

SwissProt top hitse value%identityAlignment
P51513 RNA-binding protein Nova-12.3e-1822.27Show/hide
Query:  MEKATYIRFLLSRNHEFFPGTTDRIIMVSGTINEILKAMELVLAKLLSEL-----HAEEVDDAEPRT--------------------------------K
        ++K T     LS++ +F+PGTT+R+ ++ GT+ E L A+   +A+ + E+       E V   +P+T                                +
Subjt:  MEKATYIRFLLSRNHEFFPGTTDRIIMVSGTINEILKAMELVLAKLLSEL-----HAEEVDDAEPRT--------------------------------K

Query:  VRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPH--------------------------
        V++IVP+S+ G IIGKGG+T+K  +E S A +++S Q  + +   +R+VT+SG  E+  +A +LI+ K+ EDP                           
Subjt:  VRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPH--------------------------

Query:  ------------------------------------------YTQSMNYPFSYPTSYNAMNSG-------------------------------------
                                                   T ++N   SY  + N +  G                                     
Subjt:  ------------------------------------------YTQSMNYPFSYPTSYNAMNSG-------------------------------------

Query:  --SNGGTGGRF------------------------------QNNKEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKV
          + GGT G F                              + + +   + + I V +  +G ++G+GG+ ++E  + +GARI+IS +G+F+ GT +RKV
Subjt:  --SNGGTGGRF------------------------------QNNKEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKV

Query:  TITGSQRAIRAAESMILQKVAY
        TITG+  A +AA+ +I Q++ Y
Subjt:  TITGSQRAIRAAESMILQKVAY

Q2PFW9 RNA-binding protein Nova-12.9e-2123.62Show/hide
Query:  MEKATYIRFLLSRNHEFFPGTTDRIIMVSGTINEILKAMELVLAKLLSEL-----HAEEVDDAEPRT--------KVRLIVPHSSCGAIIGKGGSTIKTF
        ++K T     LS++ +F+PGTT+R+ ++ GT+ E L A+   +A+ + E+       E V   +P+T        +V++IVP+S+ G IIGKGG+T+K  
Subjt:  MEKATYIRFLLSRNHEFFPGTTDRIIMVSGTINEILKAMELVLAKLLSEL-----HAEEVDDAEPRT--------KVRLIVPHSSCGAIIGKGGSTIKTF

Query:  IEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPH--------------------------------------------------
        +E S A +++S Q  + +   +R+VT+SG  E+  +A +LI+ K+ EDP                                                   
Subjt:  IEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPH--------------------------------------------------

Query:  ------------------YTQSMNYPFSYPTSYNAMNSG---------------------------------------SNGGTGGRF-------------
                           T ++N   SY  + N +  G                                       + GGT G F             
Subjt:  ------------------YTQSMNYPFSYPTSYNAMNSG---------------------------------------SNGGTGGRF-------------

Query:  -----------------QNNKEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRAAESMILQKVAY
                         + + +   + + I V +  +G ++G+GG+ ++E  + +GARI+IS +G+F+ GT +RKVTITG+  A +AA+ +I Q++ Y
Subjt:  -----------------QNNKEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRAAESMILQKVAY

Q80WA4 RNA-binding protein Nova-1 (Fragment)1.3e-2124.62Show/hide
Query:  MEKATYIRFLLSRNHEFFPGTTDRIIMVSGTINEILKAMELVLAKLLSEL-----HAEEVDDAEPRT--------KVRLIVPHSSCGAIIGKGGSTIKTF
        ++K T     LS++ +F+PGTT+R+ ++ GTI E L A+   +A+ + E+       E V   +P+T        +V++IVP+S+ G IIGKGG+T+K  
Subjt:  MEKATYIRFLLSRNHEFFPGTTDRIIMVSGTINEILKAMELVLAKLLSEL-----HAEEVDDAEPRT--------KVRLIVPHSSCGAIIGKGGSTIKTF

Query:  IEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPF---------SYPTSY--------------------------
        +E S A +++S Q  + +   +R+VT+SG  E+  +A +LI+ K+ EDP     +N  +         S PT +                          
Subjt:  IEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPF---------SYPTSY--------------------------

Query:  --------------------NAMN---------------------------------------------------SGSN-GGTGGRF-------------
                            +A+N                                                   SGS  GGT G F             
Subjt:  --------------------NAMN---------------------------------------------------SGSN-GGTGGRF-------------

Query:  -----------------QNNKEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRAAESMILQKVAY
                         + + +   + + I V +  +G ++G+GG+ ++E  + +GARI+IS +G+F+ GT +RKVTITG+  A +AA+ +I Q++ Y
Subjt:  -----------------QNNKEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRAAESMILQKVAY

Q9JKN6 RNA-binding protein Nova-11.3e-1822.51Show/hide
Query:  MEKATYIRFLLSRNHEFFPGTTDRIIMVSGTINEILKAMELVLAKLLSEL-----HAEEVDDAEPRT--------------------------------K
        ++K T     LS++ +F+PGTT+R+ ++ GTI E L A+   +A+ + E+       E V   +P+T                                +
Subjt:  MEKATYIRFLLSRNHEFFPGTTDRIIMVSGTINEILKAMELVLAKLLSEL-----HAEEVDDAEPRT--------------------------------K

Query:  VRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPH--------------------------
        V++IVP+S+ G IIGKGG+T+K  +E S A +++S Q  + +   +R+VT+SG  E+  +A +LI+ K+ EDP                           
Subjt:  VRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPH--------------------------

Query:  ------------------------------------------YTQSMNYPFSYPTSYNAMNSG-------------------------------------
                                                   T ++N   SY  + N +  G                                     
Subjt:  ------------------------------------------YTQSMNYPFSYPTSYNAMNSG-------------------------------------

Query:  --SNGGTGGRF------------------------------QNNKEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKV
          + GGT G F                              + + +   + + I V +  +G ++G+GG+ ++E  + +GARI+IS +G+F+ GT +RKV
Subjt:  --SNGGTGGRF------------------------------QNNKEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKV

Query:  TITGSQRAIRAAESMILQKVAY
        TITG+  A +AA+ +I Q++ Y
Subjt:  TITGSQRAIRAAESMILQKVAY

Q9LZ82 Protein BTR11.8e-9259.49Show/hide
Query:  MESTESSYVSSPEAPTKRSPPLPKSPNSDNMEKATYIRFL-----------------------------LSRNHEFFPGTTDRIIMVSGTINEILKAMEL
        MESTES    SPE   KRSP    S  +D+ EK T+IRFL                             LSRN EFFPGTTDRIIM+SG+I E++  +EL
Subjt:  MESTESSYVSSPEAPTKRSPPLPKSPNSDNMEKATYIRFL-----------------------------LSRNHEFFPGTTDRIIMVSGTINEILKAMEL

Query:  VLAKLLSELHAEEVDDAEPRTKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQS
        +L KL SELHAE+ ++ EPR ++RL+VP+SSCG IIGKGG+TIK+FIE+S+AGIKISP DN + G +DRLVTLSGT EEQMRA DLI++KL+ED HY+Q+
Subjt:  VLAKLLSELHAEEVDDAEPRTKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQS

Query:  MNYPFSYPTSYNAMNSGSNGGTGGRFQNNKEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRAAESM
        ++ P+SY   YN++N   N G+GG++QN+KEE + ++TIGV+D HIGLV+GRGGRNI+EI+Q +GARIKISDRGDFMSGTTDRKV+ITG QRAI+ AE+M
Subjt:  MNYPFSYPTSYNAMNSGSNGGTGGRFQNNKEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRAAESM

Query:  ILQKVAYASER
        I QKV  A+ER
Subjt:  ILQKVAYASER

Arabidopsis top hitse value%identityAlignment
AT2G25970.1 KH domain-containing protein6.4e-0827.03Show/hide
Query:  TKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNAMNSGSNG
        T  ++ +P+   G IIGKGG TIK     S A I+++   +       R V L+GT ++  +A  LI   L E                   A N+  +G
Subjt:  TKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNAMNSGSNG

Query:  GTGGRFQNNKEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKI----SDRGDFMSGTTDRKVTITGSQRAIRAAESMI
        G GGR +   +   +   + + +  +GL++G+GG  I  +   +GARI++       GD    T +R + I G    I  A+ ++
Subjt:  GTGGRFQNNKEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKI----SDRGDFMSGTTDRKVTITGSQRAIRAAESMI

AT4G10070.1 KH domain-containing protein2.7e-0628.21Show/hide
Query:  ELHAEEVDDAEPRTKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSY
        E   +EVD  +  T+ R+ VP S  G +IGKGG TI+    +S A I+I         S  R V + G++     A  LI + ++E              
Subjt:  ELHAEEVDDAEPRTKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSY

Query:  PTSYNAMNSGSNGGTG-GRFQNNKEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRAAESMI
             A   GS      G    +       + I V +  +GL++GRGG  I  +   SGAR ++  +     G  +R V I+G +  I  A  MI
Subjt:  PTSYNAMNSGSNGGTG-GRFQNNKEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRAAESMI

AT5G04430.1 binding to TOMV RNA 1L (long form)1.3e-9359.49Show/hide
Query:  MESTESSYVSSPEAPTKRSPPLPKSPNSDNMEKATYIRFL-----------------------------LSRNHEFFPGTTDRIIMVSGTINEILKAMEL
        MESTES    SPE   KRSP    S  +D+ EK T+IRFL                             LSRN EFFPGTTDRIIM+SG+I E++  +EL
Subjt:  MESTESSYVSSPEAPTKRSPPLPKSPNSDNMEKATYIRFL-----------------------------LSRNHEFFPGTTDRIIMVSGTINEILKAMEL

Query:  VLAKLLSELHAEEVDDAEPRTKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQS
        +L KL SELHAE+ ++ EPR ++RL+VP+SSCG IIGKGG+TIK+FIE+S+AGIKISP DN + G +DRLVTLSGT EEQMRA DLI++KL+ED HY+Q+
Subjt:  VLAKLLSELHAEEVDDAEPRTKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQS

Query:  MNYPFSYPTSYNAMNSGSNGGTGGRFQNNKEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRAAESM
        ++ P+SY   YN++N   N G+GG++QN+KEE + ++TIGV+D HIGLV+GRGGRNI+EI+Q +GARIKISDRGDFMSGTTDRKV+ITG QRAI+ AE+M
Subjt:  MNYPFSYPTSYNAMNSGSNGGTGGRFQNNKEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRAAESM

Query:  ILQKVAYASER
        I QKV  A+ER
Subjt:  ILQKVAYASER

AT5G04430.2 binding to TOMV RNA 1L (long form)6.7e-9055.72Show/hide
Query:  MESTESSYVSSPEAPTKRSPPLPKSPNSDNMEKATYIRFL-----------------------------LSRNHEFFPGTTDRIIMVSGTINEILKAMEL
        MESTES    SPE   KRSP    S  +D+ EK T+IRFL                             LSRN EFFPGTTDRIIM+SG+I E++  +EL
Subjt:  MESTESSYVSSPEAPTKRSPPLPKSPNSDNMEKATYIRFL-----------------------------LSRNHEFFPGTTDRIIMVSGTINEILKAMEL

Query:  VLAKLLSELHAEEVDDAEPRTKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQS
        +L KL SELHAE+ ++ EPR ++RL+VP+SSCG IIGKGG+TIK+FIE+S+AGIKISP DN + G +DRLVTLSGT EEQMRA DLI++KL+ED HY+Q+
Subjt:  VLAKLLSELHAEEVDDAEPRTKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQS

Query:  MNYPFSY---------------------PTSYNAMNSGSNGGTGGRFQNNKEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSG
        ++ P+SY                        YN++N   N G+GG++QN+KEE + ++TIGV+D HIGLV+GRGGRNI+EI+Q +GARIKISDRGDFMSG
Subjt:  MNYPFSY---------------------PTSYNAMNSGSNGGTGGRFQNNKEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSG

Query:  TTDRKVTITGSQRAIRAAESMILQKVAYASER
        TTDRKV+ITG QRAI+ AE+MI QKV  A+ER
Subjt:  TTDRKVTITGSQRAIRAAESMILQKVAYASER

AT5G46190.1 RNA-binding KH domain-containing protein2.1e-0623.64Show/hide
Query:  FPGTTDRIIMVSGTINE------------------------ILKAMELVLAKLLSELHAEEVDDAEPRTKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQA
        FPG ++R+I +  +++E                        +LK  + ++A L +     ++D  + R + RL+VP S C  +IGK GS IK     ++A
Subjt:  FPGTTDRIIMVSGTINE------------------------ILKAMELVLAKLLSELHAEEVDDAEPRTKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQA

Query:  GIKISPQDNNYMGST-----DRLVTLSGTIEEQMRATDLI------VSKLSEDPHYTQSMNYPFS---------------YPTSYNAMNSGSN-------
         +K+  +D +    T     D +V +SG  E   +A   +      VS   + P  T     P S               YP+  +    G+N       
Subjt:  GIKISPQDNNYMGST-----DRLVTLSGTIEEQMRATDLI------VSKLSEDPHYTQSMNYPFS---------------YPTSYNAMNSGSN-------

Query:  --GGTGGRFQN----------------NKEERNNSLTIGV--SDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRAAES
           G G    N                    R+  L I V  S   IG V+G+GG  I  I QASG+ I+++D     +   D  +T+T ++ +    +S
Subjt:  --GGTGGRFQN----------------NKEERNNSLTIGV--SDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRAAES

Query:  MILQKVAYASERV
        M ++ V    E++
Subjt:  MILQKVAYASERV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTCCACCGAGTCCTCATACGTCTCGTCTCCGGAGGCACCTACGAAGCGATCTCCACCGCTGCCAAAATCTCCGAACTCAGATAATATGGAAAAGGCTACATATAT
TAGGTTTCTGTTGTCACGGAACCATGAATTTTTCCCTGGAACCACTGATAGGATCATTATGGTATCTGGAACAATAAATGAAATACTGAAGGCCATGGAACTCGTTCTTG
CCAAGTTGTTGAGTGAGCTTCACGCTGAAGAAGTAGATGATGCTGAACCGAGAACAAAAGTGAGATTAATCGTTCCCCATAGTTCATGTGGTGCTATAATTGGCAAGGGA
GGATCCACTATAAAGACATTTATTGAGGACTCTCAAGCTGGCATTAAGATATCCCCACAAGATAATAACTATATGGGATCCACTGATAGGCTGGTGACGCTGTCTGGAAC
CATAGAGGAACAGATGCGAGCTACTGACTTGATTGTCTCAAAGCTATCTGAGGATCCACATTACACCCAGTCAATGAATTATCCATTTTCATACCCGACATCATACAATG
CTATGAATTCCGGATCCAACGGAGGAACTGGAGGGAGGTTTCAAAACAACAAGGAGGAACGGAATAACTCCTTGACTATTGGCGTTTCAGATGGCCACATCGGATTAGTT
GTTGGTCGTGGCGGAAGAAACATACTGGAAATTAGTCAGGCTAGTGGTGCCAGAATTAAGATATCTGATAGGGGAGATTTCATGTCCGGAACCACTGACAGGAAAGTAAC
GATTACAGGGTCACAAAGAGCAATCCGTGCTGCTGAATCGATGATTCTGCAGAAAGTAGCATATGCTTCTGAGAGGGTTCTAGCACAGTGA
mRNA sequenceShow/hide mRNA sequence
ACGAGTCGAGTTTTTGCGAGCGCTCTGCCACACCTTCTTCCCCATTTATCAACTACTCTGCAACTCTATTTCTCTTTCTCTCTCGCCGCCGCCGCCGCCGCCGCCGACGT
GAAGGAGGAGGAAGGAGAATGGAGTCCACCGAGTCCTCATACGTCTCGTCTCCGGAGGCACCTACGAAGCGATCTCCACCGCTGCCAAAATCTCCGAACTCAGATAATAT
GGAAAAGGCTACATATATTAGGTTTCTGTTGTCACGGAACCATGAATTTTTCCCTGGAACCACTGATAGGATCATTATGGTATCTGGAACAATAAATGAAATACTGAAGG
CCATGGAACTCGTTCTTGCCAAGTTGTTGAGTGAGCTTCACGCTGAAGAAGTAGATGATGCTGAACCGAGAACAAAAGTGAGATTAATCGTTCCCCATAGTTCATGTGGT
GCTATAATTGGCAAGGGAGGATCCACTATAAAGACATTTATTGAGGACTCTCAAGCTGGCATTAAGATATCCCCACAAGATAATAACTATATGGGATCCACTGATAGGCT
GGTGACGCTGTCTGGAACCATAGAGGAACAGATGCGAGCTACTGACTTGATTGTCTCAAAGCTATCTGAGGATCCACATTACACCCAGTCAATGAATTATCCATTTTCAT
ACCCGACATCATACAATGCTATGAATTCCGGATCCAACGGAGGAACTGGAGGGAGGTTTCAAAACAACAAGGAGGAACGGAATAACTCCTTGACTATTGGCGTTTCAGAT
GGCCACATCGGATTAGTTGTTGGTCGTGGCGGAAGAAACATACTGGAAATTAGTCAGGCTAGTGGTGCCAGAATTAAGATATCTGATAGGGGAGATTTCATGTCCGGAAC
CACTGACAGGAAAGTAACGATTACAGGGTCACAAAGAGCAATCCGTGCTGCTGAATCGATGATTCTGCAGAAAGTAGCATATGCTTCTGAGAGGGTTCTAGCACAGTGAT
AGAATGGCGAAAGCTCTGAATGTTTGTAGAAACAAGGCCGGGAGATTTTCAGTTTTACCATTGAGGGAGAGCATGGCAATGGCAATGGAAATGAGCGGAAAAATAGTTAA
GATATCCTGGTGCGTTGAGAGAGATAACGCCATAATTTGATTGATGAGCCAAATAGAAAGATTAGCAGTGTCAAGTTGTTTATACAATTGTAGCCTTGAATTTATTTTAT
ATTTATGTTTTGAGCTTTATCTCTATTAAATTGTTTGAACCTGCCTTCTCTTCACAACATATTGTAGCTTTTTAGGATGTTCTATTTTTATTAATTGGTGAATTCTTTAG
TCTTTATGTTGGGGTTTGCTGAGAGATTTTGTTCTTGTATGTTCTGTTAGCAATAACTATCATATATATGCATATACCTCCCATGTGGGCTTCTGGGCCATCTTTTGG
Protein sequenceShow/hide protein sequence
MESTESSYVSSPEAPTKRSPPLPKSPNSDNMEKATYIRFLLSRNHEFFPGTTDRIIMVSGTINEILKAMELVLAKLLSELHAEEVDDAEPRTKVRLIVPHSSCGAIIGKG
GSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNAMNSGSNGGTGGRFQNNKEERNNSLTIGVSDGHIGLV
VGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRAAESMILQKVAYASERVLAQ